MD16G1286800.v1.1

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014216
Physical Location & Seq
Reverse (-)
41084839 .. 41085225
387 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1286800.v1.1.491

Sequence Viewer

Length: 387 bp
ATGACAAGAAAATTAACCCAAGGATCAGCCACGCACACTTTGGTTTGGTTTGCAGCCATAATCTGCACCGTCGTAGCCATAGCCGTGATCATTGCAGGCATCGTGGTGTTTTCCGGCTACATGATCATCCATCCAAGGGTGCCTTTAATCACCGTCACCTCTGCTTATCTCGATAACTTTCAAAACACCGAGGCCAGTCTTCTTGAAACGGAGATCACCATTGTTGTAAGGGCGGAGAACGACAACACCAATGCGCATGCAAGCTTTTCGGATACAAGCTTCATGCTGAGCTTCCGAGGGCTGAACATTGCGGGGCTGGTGGCGTATCCGTTCGAAGTCAATAAAAATAGCTTGGTTGATTTCCATTACTTGGTGCAATCATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

129

Amino Acids

14.03

Weight (kDa)

5.68

Isoelectric Point (pI)

24.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 139
AccB7I CCANNNNNTGG 1 cut(s) 370
AciI CCGC 2 cut(s) 233, 311
AclWI GGATC 1 cut(s) 31
AfiI CCNNNNNNNGG 2 cut(s) 136, 370
AgsI TTSAA 2 cut(s) 182, 206
AluBI AGCT 4 cut(s) 264, 279, 291, 351
AluI AGCT 4 cut(s) 264, 279, 291, 351
AlwI GGATC 1 cut(s) 31
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 256
AsuHPI GGTGA 3 cut(s) 142, 148, 208
AsuII TTCGAA 1 cut(s) 333
BanI GGYRCC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 249, 283
BciVI GTATCC 2 cut(s) 265, 336
BclI TGATCA 2 cut(s) 87, 123
BfuI GTATCC 2 cut(s) 265, 336
BisI GCNGC 1 cut(s) 54
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 191
Bpu1102I GCTNAGC 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 333
BsaJI CCNNGG 4 cut(s) 19, 134, 189, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 370
Bse1I ACTGG 1 cut(s) 195
Bse3DI GCAATG 2 cut(s) 90, 306
BseDI CCNNGG 4 cut(s) 19, 134, 189, 295
BseGI GGATG 2 cut(s) 126, 130
BseLI CCNNNNNNNGG 2 cut(s) 136, 370
BseMI GCAATG 2 cut(s) 90, 306
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 49
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 136, 370
BsnI GGCC 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 333
Bsp143I GATC 4 cut(s) 23, 87, 123, 213
Bsp1720I GCTNAGC 1 cut(s) 287
BspACI CCGC 2 cut(s) 233, 311
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 1 cut(s) 31
BspT104I TTCGAA 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 90, 306
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 4 cut(s) 19, 134, 189, 295
BssMI GATC 4 cut(s) 23, 87, 123, 213
BssT1I CCWWGG 2 cut(s) 19, 134
Bst4CI ACNGT 2 cut(s) 70, 154
BstBI TTCGAA 1 cut(s) 333
BstC8I GCNNGC 3 cut(s) 97, 258, 262
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 2 cut(s) 126, 130
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 4 cut(s) 26, 90, 126, 216
BstMBI GATC 4 cut(s) 23, 87, 123, 213
BstNSI RCATGY 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 191
BsuI GTATCC 2 cut(s) 265, 336
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 2 cut(s) 126, 130
Cac8I GCNNGC 3 cut(s) 97, 258, 262
CfoI GCGC 1 cut(s) 256
CviAII CATG 3 cut(s) 121, 257, 283
DdeI CTNAG 1 cut(s) 287
DpnI GATC 4 cut(s) 25, 89, 125, 215
DpnII GATC 4 cut(s) 23, 87, 123, 213
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 2 cut(s) 19, 134
EcoT14I CCWWGG 2 cut(s) 19, 134
ErhI CCWWGG 2 cut(s) 19, 134
FaeI CATG 3 cut(s) 124, 260, 286
FaiI YATR 5 cut(s) 59, 80, 122, 258, 284
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 3 cut(s) 120, 256, 282
FauI CCCGC 1 cut(s) 304
FbaI TGATCA 2 cut(s) 87, 123
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 113, 117
Fsp4HI GCNGC 1 cut(s) 54
FspAI RTGCGCAY 1 cut(s) 255
FspI TGCGCA 1 cut(s) 255
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 256
Hin1II CATG 3 cut(s) 124, 260, 286
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HindIII AAGCTT 2 cut(s) 262, 277
HpaII CCGG 1 cut(s) 114
HphI GGTGA 3 cut(s) 142, 148, 208
Hpy188I TCNGA 2 cut(s) 271, 296
Hpy188III TCNNGA 2 cut(s) 170, 203
Hpy99I CGWCG 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 70, 154
HpyCH4V TGCA 5 cut(s) 53, 66, 95, 260, 376
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 3 cut(s) 124, 260, 286
HspAI GCGC 1 cut(s) 254
Ksp22I TGATCA 2 cut(s) 87, 123
Kzo9I GATC 4 cut(s) 23, 87, 123, 213
LpnPI CCDG 4 cut(s) 81, 127, 208, 302
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 154
MalI GATC 4 cut(s) 25, 89, 125, 215
MboI GATC 4 cut(s) 23, 87, 123, 213
MboII GAAGA 1 cut(s) 191
MluCI AATT 1 cut(s) 11
MnlI CCTC 3 cut(s) 169, 184, 290
MseI TTAA 2 cut(s) 14, 146
MslI CAYNNNNRTG 2 cut(s) 83, 104
MspI CCGG 1 cut(s) 114
NdeII GATC 4 cut(s) 23, 87, 123, 213
NlaIII CATG 3 cut(s) 124, 260, 286
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 154
NsbI TGCGCA 1 cut(s) 255
NspI RCATGY 1 cut(s) 260
NspV TTCGAA 1 cut(s) 333
PaeI GCATGC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 370
PkrI GCNGC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 141
RseI CAYNNNNRTG 2 cut(s) 83, 104
SaqAI TTAA 2 cut(s) 14, 146
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 4 cut(s) 23, 87, 123, 213
SetI ASST 5 cut(s) 161, 266, 281, 293, 353
SfaNI GCATC 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 83, 104
SphI GCATGC 1 cut(s) 260
Sse9I AATT 1 cut(s) 11
SsiI CCGC 2 cut(s) 233, 311
StyI CCWWGG 2 cut(s) 19, 134
TaaI ACNGT 2 cut(s) 70, 154
TaqI TCGA 2 cut(s) 171, 333
TasI AATT 1 cut(s) 11
Tru1I TTAA 2 cut(s) 14, 146
Tru9I TTAA 2 cut(s) 14, 146
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 271
TspGWI ACGGA 2 cut(s) 224, 318
Van91I CCANNNNNTGG 1 cut(s) 370
XceI RCATGY 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.