Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006661

Physical Location & Seq

Genomic Coordinates Forward (+)

18537239 .. 18538418

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCGACGAAACTCATACTCAAGAAAACGACAAAATCCATCAGCCGTCACCAACGTAACTACCTCCGCCGTCACCGGAAATCTCAGATCGGATGCTCACCGTCTCCGGCCACAACCACCGTAATCGCCACCATCAACAAATCGATCTACAGATGTCATCGAACTTTTCTCTGTTTGTTTTCTCGTCACGCAACAAAAGGATTCAAAATCCTCAAACCTCGCGAAGATTTTCAGAATTCTCCGTATTCATTGTTTCACGAAAGATCTGGTAAATCATTCGACGAGACGAAGAAGACGATCGTGTTAGATCTAGACGAAACTCTTGTTCATTCATCAATGGAGAAACCAGAAGTACCGTATGATTTCGTCGTGAATCCCAAAATCGACGGTCAGATCTTAACGTTTTTCGTGATCAAACGGCCAGGAGTCGACGAGTTTTTGAAGAAGATCGGAGAAAAGTACCAGATCGTTGTTTTCACGGCGGGATTGAGAGAGTACGCGTCGTTAGTGCTCGATAAATTGGATCCAGAGCGGCGCGTGATATCGCGTAGCTTTTACAGAGACGCGTGTAGCGAAATTGATGGGAGGTTAGTGAAGGATTTAGGGTTTGTGATGAGAGATTTGAGGCGCGTGGTGATTGTTGATGATAATCCGAACTCGTACGCGCTTCAACCGGAGAATGCGTTTCCGATTAAACCGTTTTCTGATGATTTGGAAGATGTTGAGTTGAAGAAACTTGGTGAGTTTTTGTATGGTGATTGTGTCAAGTTTGAAGATATGAGAGTTGCTTTGAAGGAGTTTGTTGGAAGAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

272

Amino Acids

31.51

Weight (kDa)

9.14

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	98 - 261	3e-52	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29770 AT1G29780 AT5G45700
fragaria_vesca	FvH4_3g07100 FvH4_3g07110 FvH4_3g36710
malus_domestica	MD00G1007300.v1.1 MD00G1007500.v1.1 MD10G1273900.v1.1 MD10G1274000.v1.1
prunus_persica	Prupe.4G068500_v2.0.a1 Prupe.4G068600_v2.0.a1
pyrus_communis	pycom05g27270 pycom10g22870
rosa_chinensis	RchiOBHm_Chr5g0012001 RchiOBHm_Chr5g0012011
rosa_laevigata	RLG00000031878
rosa_multiflora	Rmu_co8217880.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064580
rosa_rugosa	Rorug04G0460300 Rorug04G0460300
rosa_samantha	Rh5BG088100 Rh5BG088200 Rh5CG102000 Rh5DG088700
rosa_wichuraiana	Rw5G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	532
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	7 cut(s)	222, 500, 537, 547, 566, 630, 665
AciI	CCGC	3 cut(s)	67, 482, 532
AclI	AACGTT	1 cut(s)	401
AclWI	GGATC	2 cut(s)	518, 531
AcoI	YGGCCR	2 cut(s)	108, 419
AcsI	RAATTY	1 cut(s)	235
AfaI	GTAC	4 cut(s)	354, 461, 497, 662
AflIII	ACRYGT	2 cut(s)	498, 564
AgsI	TTSAA	6 cut(s)	205, 442, 671, 730, 773, 793
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	1 cut(s)	552
AluI	AGCT	1 cut(s)	552
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	3 cut(s)	108, 278, 555
AlwI	GGATC	2 cut(s)	518, 531
AoxI	GGCC	2 cut(s)	108, 419
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	3 cut(s)	537, 630, 667
AsuHPI	GGTGA	6 cut(s)	41, 65, 90, 646, 752, 767
BamHI	GGATCC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	513
BccI	CCATC	3 cut(s)	47, 140, 575
BceAI	ACGGC	4 cut(s)	30, 54, 434, 495
BciT130I	CCWGG	1 cut(s)	423
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	3 cut(s)	108, 278, 555
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	148
BglII	AGATCT	3 cut(s)	263, 307, 393
BisI	GCNGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	534
Bme1390I	CCNGG	1 cut(s)	423
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	5
Bsa29I	ATCGAT	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	648
BsaWI	WCCGGW	2 cut(s)	75, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	143
BseGI	GGATG	1 cut(s)	98
BseJI	GATNNNNATC	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	98
Bsh1236I	CGCG	7 cut(s)	222, 500, 537, 547, 566, 630, 665
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	110, 421
BshVI	ATCGAT	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	3 cut(s)	76, 107, 674
BsiWI	CGTACG	1 cut(s)	660
BsmAI	GTCTC	3 cut(s)	108, 278, 555
BsmBI	CGTCTC	3 cut(s)	108, 278, 555
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	2 cut(s)	110, 421
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp68I	TCGCGA	1 cut(s)	222
BspACI	CCGC	3 cut(s)	67, 482, 532
BspANI	GGCC	2 cut(s)	110, 421
BspCNI	CTCAG	1 cut(s)	97
BspDI	ATCGAT	1 cut(s)	143
BspFNI	CGCG	7 cut(s)	222, 500, 537, 547, 566, 630, 665
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	2 cut(s)	518, 531
BsrBI	CCGCTC	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	5 cut(s)	102, 121, 357, 389, 699
Bst6I	CTCTTC	1 cut(s)	802
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	98
BstFNI	CGCG	7 cut(s)	222, 500, 537, 547, 566, 630, 665
BstHHI	GCGC	3 cut(s)	537, 630, 667
BstMAI	GTCTC	3 cut(s)	108, 278, 555
BstMCI	CGRYCG	1 cut(s)	300
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	1 cut(s)	148
BstUI	CGCG	7 cut(s)	222, 500, 537, 547, 566, 630, 665
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	4 cut(s)	263, 307, 393, 523
BstYI	RGATCY	4 cut(s)	263, 307, 393, 523
Bsu15I	ATCGAT	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	110, 421
BsuTUI	ATCGAT	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	98
BtuMI	TCGCGA	1 cut(s)	222
CfoI	GCGC	3 cut(s)	537, 630, 667
ClaI	ATCGAT	1 cut(s)	143
CseI	GACGC	2 cut(s)	489, 572
Csp6I	GTAC	4 cut(s)	353, 460, 496, 661
CviJI	RGCY	4 cut(s)	45, 110, 421, 552
CviKI_1	RGCY	4 cut(s)	45, 110, 421, 552
CviQI	GTAC	4 cut(s)	353, 460, 496, 661
DdeI	CTNAG	1 cut(s)	84
EaeI	YGGCCR	2 cut(s)	108, 419
Eam1104I	CTCTTC	1 cut(s)	802
EarI	CTCTTC	1 cut(s)	802
EciI	GGCGGA	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	421
EcoRV	GATATC	1 cut(s)	543
Esp3I	CGTCTC	3 cut(s)	108, 278, 555
FaiI	YATR	4 cut(s)	17, 360, 753, 779
FauI	CCCGC	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	533
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	3 cut(s)	536, 629, 666
GluI	GCNGC	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	110, 421
HapII	CCGG	3 cut(s)	76, 107, 674
HgaI	GACGC	2 cut(s)	489, 572
HhaI	GCGC	3 cut(s)	537, 630, 667
Hin6I	GCGC	3 cut(s)	535, 628, 665
HinP1I	GCGC	3 cut(s)	535, 628, 665
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	201, 373, 426
HpaII	CCGG	3 cut(s)	76, 107, 674
HphI	GGTGA	6 cut(s)	41, 65, 90, 646, 752, 767
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	8 cut(s)	87, 92, 234, 393, 452, 654, 690, 706
Hpy188III	TCNNGA	7 cut(s)	22, 221, 257, 311, 370, 409, 527
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	6 cut(s)	10, 284, 371, 389, 434, 505
HpyAV	CCTTC	2 cut(s)	589, 787
HpyCH4III	ACNGT	5 cut(s)	102, 121, 357, 389, 699
HpyCH4IV	ACGT	2 cut(s)	55, 401
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	2 cut(s)	55, 401
HspAI	GCGC	3 cut(s)	535, 628, 665
Ksp22I	TGATCA	1 cut(s)	411
LpnPI	CCDG	9 cut(s)	89, 120, 252, 360, 408, 435, 476, 540, 687
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	55, 401
MaeIII	GTNAC	4 cut(s)	47, 56, 71, 185
MbiI	CCGCTC	1 cut(s)	532
MboII	GAAGA	9 cut(s)	236, 301, 304, 454, 457, 728, 742, 785, 819
MflI	RGATCY	4 cut(s)	263, 307, 393, 523
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	3 cut(s)	235, 518, 576
MluI	ACGCGT	2 cut(s)	498, 564
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	784
MnlI	CCTC	5 cut(s)	74, 221, 228, 579, 618
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	398, 693
MspI	CCGG	3 cut(s)	76, 107, 674
MspR9I	CCNGG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	685
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	7 cut(s)	222, 500, 537, 547, 566, 630, 665
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	3 cut(s)	47, 71, 185
NruI	TCGCGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	2 cut(s)	293, 570
PctI	GAATGC	1 cut(s)	685
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	201, 373
Pfl23II	CGTACG	1 cut(s)	660
PkrI	GCNGC	1 cut(s)	534
Ple19I	CGATCG	1 cut(s)	300
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
Psp1406I	AACGTT	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspLI	CGTACG	1 cut(s)	660
PspN4I	GGNNCC	1 cut(s)	525
PsuI	RGATCY	4 cut(s)	263, 307, 393, 523
PvuI	CGATCG	1 cut(s)	300
RruI	TCGCGA	1 cut(s)	222
RsaI	GTAC	4 cut(s)	354, 461, 497, 662
RsaNI	GTAC	4 cut(s)	353, 460, 496, 661
SalI	GTCGAC	1 cut(s)	428
SaqAI	TTAA	2 cut(s)	398, 693
SatI	GCNGC	1 cut(s)	533
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	6 cut(s)	58, 66, 220, 404, 554, 590
SfaNI	GCATC	1 cut(s)	83
SfcI	CTRYAG	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	235, 518, 576
SsiI	CCGC	3 cut(s)	67, 482, 532
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	421
TaaI	ACNGT	5 cut(s)	102, 121, 357, 389, 699
TaiI	ACGT	2 cut(s)	58, 404
TaqI	TCGA	6 cut(s)	143, 160, 279, 384, 429, 513
TasI	AATT	3 cut(s)	235, 518, 576
TauI	GCSGC	1 cut(s)	535
TfiI	GAWTC	2 cut(s)	201, 373
Tru1I	TTAA	2 cut(s)	398, 693
Tru9I	TTAA	2 cut(s)	398, 693
TseFI	GTSAC	3 cut(s)	47, 71, 185
Tsp45I	GTSAC	3 cut(s)	47, 71, 185
TspDTI	ATGAA	3 cut(s)	237, 317, 321
TspGWI	ACGGA	1 cut(s)	231
XapI	RAATTY	1 cut(s)	235
XbaI	TCTAGA	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.