Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8217880.1

Orthogroup ID

OG0006661

Physical Location & Seq

Genomic Coordinates Reverse (-)

149 .. 688

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8217880.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggtccactcgcaggccggatcgccgccggagaagtacgacttcgtcgtccggccgaggatcgacggcatggtgttggatttctacgttctgaagcggcccggagtggacgagttgctggagaagctcggcgagaagtatgaggtggtggtgttcacggcggggctgagagagtacgcttctttggtgctggaccggttggaccggaagcgcgtgatctcccatcgcctgtaccgcgactcgtgcaaggaggtggatgggaagttcgtgaaggacttgtccggcttggggagggacttgaggcgcgtggtgatcgtggacgacaatccgaactcctacgcgcttcaaccggagaatggggtaccggtccggccgtttttggatgacatggcggaccgggaactggggaagttggtggagttttttgaaggggagcaatgtggttgctgtgaggatatgagggatgctgtgaagaactatgttgctgctggggaatgcgttgcgaaaaatgacgaagaattcgaaactttgcagacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

179

Amino Acids

20.38

Weight (kDa)

4.87

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29770 AT1G29780 AT5G45700
fragaria_vesca	FvH4_3g07100 FvH4_3g07110 FvH4_3g36710
malus_domestica	MD00G1007300.v1.1 MD00G1007500.v1.1 MD10G1273900.v1.1 MD10G1274000.v1.1
prunus_persica	Prupe.4G068500_v2.0.a1 Prupe.4G068600_v2.0.a1
pyrus_communis	pycom05g27270 pycom10g22870
rosa_chinensis	RchiOBHm_Chr5g0012001 RchiOBHm_Chr5g0012011
rosa_laevigata	RLG00000031878
rosa_multiflora	Rmu_co8217880.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064580
rosa_rugosa	Rorug04G0460300 Rorug04G0460300
rosa_samantha	Rh5BG088100 Rh5BG088200 Rh5CG102000 Rh5DG088700
rosa_wichuraiana	Rw5G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
Acc65I	GGTACC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	361
AccII	CGCG	4 cut(s)	213, 237, 306, 341
AciI	CCGC	5 cut(s)	26, 97, 161, 235, 392
AclWI	GGATC	2 cut(s)	28, 68
AcoI	YGGCCR	2 cut(s)	53, 371
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	4 cut(s)	38, 176, 233, 363
AfiI	CCNNNNNNNGG	4 cut(s)	13, 288, 356, 403
AgeI	ACCGGT	2 cut(s)	195, 364
AgsI	TTSAA	2 cut(s)	347, 428
AloI	GAACNNNNNNTCC	2 cut(s)	248, 280
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
AlwI	GGATC	2 cut(s)	28, 68
AoxI	GGCC	4 cut(s)	15, 53, 98, 371
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	518
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AsiGI	ACCGGT	2 cut(s)	195, 364
Asp718I	GGTACC	1 cut(s)	361
AspLEI	GCGC	3 cut(s)	213, 306, 343
AspS9I	GGNCC	6 cut(s)	4, 99, 193, 202, 367, 394
AsuC2I	CCSGG	2 cut(s)	102, 398
AsuHPI	GGTGA	1 cut(s)	322
AsuII	TTCGAA	1 cut(s)	522
AvaII	GGWCC	5 cut(s)	4, 193, 202, 367, 394
BanI	GGYRCC	1 cut(s)	361
BauI	CACGAG	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	2 cut(s)	231, 251
BceAI	ACGGC	3 cut(s)	82, 174, 358
BcnI	CCSGG	2 cut(s)	102, 398
BisI	GCNGC	3 cut(s)	26, 98, 486
BlsI	GCNGC	3 cut(s)	27, 99, 487
Bme1390I	CCNGG	2 cut(s)	102, 398
Bme18I	GGWCC	5 cut(s)	4, 193, 202, 367, 394
BmgT120I	GGNCC	6 cut(s)	4, 99, 193, 202, 367, 394
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	2 cut(s)	102, 398
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	1 cut(s)	454
BmuI	ACTGGG	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	319
BpuMI	CCSGG	2 cut(s)	102, 398
BsaJI	CCNNGG	1 cut(s)	56
BsaWI	WCCGGW	4 cut(s)	195, 204, 349, 364
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 288, 356, 403
Bse118I	RCCGGY	2 cut(s)	195, 364
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	3 cut(s)	262, 388, 469
BseLI	CCNNNNNNNGG	4 cut(s)	13, 288, 356, 403
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	408
BseX3I	CGGCCG	2 cut(s)	53, 371
BseXI	GCAGC	1 cut(s)	472
BseYI	CCCAGC	1 cut(s)	488
Bsh1236I	CGCG	4 cut(s)	213, 237, 306, 341
Bsh1285I	CGRYCG	2 cut(s)	56, 374
BshFI	GGCC	4 cut(s)	17, 55, 100, 373
BshNI	GGYRCC	1 cut(s)	361
BshTI	ACCGGT	2 cut(s)	195, 364
BsiEI	CGRYCG	2 cut(s)	56, 374
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	4 cut(s)	13, 288, 356, 403
BsmFI	GGGAC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	4 cut(s)	17, 55, 100, 373
Bsp119I	TTCGAA	1 cut(s)	522
Bsp143I	GATC	4 cut(s)	20, 60, 216, 312
BspACI	CCGC	5 cut(s)	26, 97, 161, 235, 392
BspANI	GGCC	4 cut(s)	17, 55, 100, 373
BspCNI	CTCAG	1 cut(s)	159
BspFNI	CGCG	4 cut(s)	213, 237, 306, 341
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	2 cut(s)	28, 68
BspT104I	TTCGAA	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	443
BsrFI	RCCGGY	2 cut(s)	195, 364
BsrI	ACTGG	1 cut(s)	408
BssAI	RCCGGY	2 cut(s)	195, 364
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	4 cut(s)	20, 60, 216, 312
BssSI	CACGAG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	262, 388, 469
BstFNI	CGCG	4 cut(s)	213, 237, 306, 341
BstHHI	GCGC	3 cut(s)	213, 306, 343
BstKTI	GATC	4 cut(s)	23, 63, 219, 315
BstMBI	GATC	4 cut(s)	20, 60, 216, 312
BstMCI	CGRYCG	2 cut(s)	56, 374
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 234, 243
BstSCI	CCNGG	2 cut(s)	100, 396
BstUI	CGCG	4 cut(s)	213, 237, 306, 341
BstV1I	GCAGC	1 cut(s)	472
BstZI	CGGCCG	2 cut(s)	53, 371
BsuRI	GGCC	4 cut(s)	17, 55, 100, 373
BtgZI	GCGATG	1 cut(s)	209
BtsCI	GGATG	3 cut(s)	262, 388, 469
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	3 cut(s)	213, 306, 343
Cfr10I	RCCGGY	2 cut(s)	195, 364
Cfr13I	GGNCC	6 cut(s)	4, 99, 193, 202, 367, 394
CpoI	CGGWCCG	2 cut(s)	367, 394
Csp6I	GTAC	4 cut(s)	37, 175, 232, 362
CspAI	ACCGGT	2 cut(s)	195, 364
CspI	CGGWCCG	2 cut(s)	367, 394
CviAII	CATG	2 cut(s)	70, 388
CviJI	RGCY	7 cut(s)	17, 55, 100, 127, 166, 285, 373
CviKI_1	RGCY	7 cut(s)	17, 55, 100, 127, 166, 285, 373
CviQI	GTAC	4 cut(s)	37, 175, 232, 362
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	4 cut(s)	22, 62, 218, 314
DpnII	GATC	4 cut(s)	20, 60, 216, 312
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	2 cut(s)	53, 371
EagI	CGGCCG	2 cut(s)	53, 371
EciI	GGCGGA	1 cut(s)	407
EclXI	CGGCCG	2 cut(s)	53, 371
Eco47I	GGWCC	5 cut(s)	4, 193, 202, 367, 394
Eco52I	CGGCCG	2 cut(s)	53, 371
Eco57I	CTGAAG	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	518
FaeI	CATG	2 cut(s)	73, 391
FaiI	YATR	5 cut(s)	71, 141, 389, 458, 480
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	2 cut(s)	69, 387
FauI	CCCGC	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	26, 98, 486
FokI	GGATG	3 cut(s)	269, 395, 476
Fsp4HI	GCNGC	3 cut(s)	26, 98, 486
GlaI	GCGC	3 cut(s)	212, 305, 342
GluI	GCNGC	3 cut(s)	26, 98, 486
GsaI	CCCAGC	1 cut(s)	492
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	4 cut(s)	17, 55, 100, 373
HhaI	GCGC	3 cut(s)	213, 306, 343
Hin1II	CATG	2 cut(s)	73, 391
Hin6I	GCGC	3 cut(s)	211, 304, 341
HinP1I	GCGC	3 cut(s)	211, 304, 341
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	4 cut(s)	7, 109, 156, 319
Hpy188I	TCNGA	2 cut(s)	93, 330
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	4 cut(s)	7, 109, 156, 319
Hpy99I	CGWCG	2 cut(s)	50, 68
HpyAV	CCTTC	2 cut(s)	265, 422
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	246, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 234, 243
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	73, 391
HspAI	GCGC	3 cut(s)	211, 304, 341
KpnI	GGTACC	1 cut(s)	365
Kzo9I	GATC	4 cut(s)	20, 60, 216, 312
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	1 cut(s)	454
MaeII	ACGT	1 cut(s)	87
MalI	GATC	4 cut(s)	22, 62, 218, 314
MboI	GATC	4 cut(s)	20, 60, 216, 312
MboII	GAAGA	2 cut(s)	484, 527
MluCI	AATT	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	2 cut(s)	57, 180
MnlI	CCTC	7 cut(s)	51, 136, 244, 285, 294, 445, 453
MspR9I	CCNGG	2 cut(s)	102, 398
Mva1269I	GAATGC	1 cut(s)	500
MvnI	CGCG	4 cut(s)	213, 237, 306, 341
MwoI	GCNNNNNNNGC	3 cut(s)	124, 234, 243
NciI	CCSGG	2 cut(s)	102, 398
NdeII	GATC	4 cut(s)	20, 60, 216, 312
NlaIII	CATG	2 cut(s)	73, 391
NlaIV	GGNNCC	1 cut(s)	363
NmeAIII	GCCGAG	2 cut(s)	81, 108
NspV	TTCGAA	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 519
PctI	GAATGC	1 cut(s)	500
PflFI	GACNNNGTC	1 cut(s)	44
PinAI	ACCGGT	2 cut(s)	195, 364
PkrI	GCNGC	3 cut(s)	27, 99, 487
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	6 cut(s)	4, 99, 193, 202, 367, 394
PsyI	GACNNNGTC	1 cut(s)	44
RsaI	GTAC	4 cut(s)	38, 176, 233, 363
RsaNI	GTAC	4 cut(s)	37, 175, 232, 362
Rsr2I	CGGWCCG	2 cut(s)	367, 394
RsrII	CGGWCCG	2 cut(s)	367, 394
SatI	GCNGC	3 cut(s)	26, 98, 486
Sau3AI	GATC	4 cut(s)	20, 60, 216, 312
Sau96I	GGNCC	6 cut(s)	4, 99, 193, 202, 367, 394
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	102, 398
SetI	ASST	4 cut(s)	90, 129, 147, 255
SfaNI	GCATC	1 cut(s)	454
SfuI	TTCGAA	1 cut(s)	522
SinI	GGWCC	5 cut(s)	4, 193, 202, 367, 394
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	1 cut(s)	518
SsiI	CCGC	5 cut(s)	26, 97, 161, 235, 392
StyD4I	CCNGG	2 cut(s)	100, 396
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	63, 522
TasI	AATT	1 cut(s)	518
TauI	GCSGC	2 cut(s)	28, 100
TseI	GCWGC	1 cut(s)	485
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	5 cut(s)	4, 193, 202, 367, 394
XapI	RAATTY	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.