MD10G1273900.v1.1

Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
36572371 .. 36573426
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1273900.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGGTGTGTAAGATCTTGAAGAAAGCCGCAATCGACATAAATCCAATGTCCATCAGCCGCTGTCACGGCATAAGGCGGCGCCACCGCCACAACTGCTCAGTTATAAAGGCTGCAGCTGCTGCTGCCTCCTCTATCGTGCTGACCCGCATTGGCTTCAATAAAGGATTTAAGTTCATTCAAAAAAGACAAACCCGAGAGGGCCAACCCGAATCCGAATTAACCAAAGAACGCCGTCCGCTCCCACCGCTGACTTCGCCGGAGAAGCGGACCGTGTTCCTTGATCTCGACGAGACACTGGTCCATTCCGTGACGGGCCCGCCGCCCAAGAAATTTGACTTCGTCGTACGGCCGAAGATTCGCGGCAAAATCATGACTTTCTACGTCGTGAAGCGTCCCGGCGTGGACGAGTTTTTGGAGAAATTAGGGAACAAGTACGAGGTGGTTGTGTTCACGGCCGGGTTGCGCGAGTACGCAACGCTGGTGCTAGACCGGCTGGACCGGAAGCGGGTGATATCACACCGTCTCTACAGGGACACGTGTACGGAGATAAATGGTAGGTTCGTGAAGGACTTATCCGGATTGGGGAGGGACCTGAGCCGACTGGTGATCGTCGACGACAATCCCAACGCGTACTGCTTCCAGCCGGAGAACGCGGTCCCAATCCGGCCGTTTGTGGACGACGTGGCGGACCGGGAGTTGAGGAGGGTGCTGGAGTTCTTCGAGGACGAGGAGACTCGCAGTTGTGACGACATTAGGGACGCCGTGAGGCGGTTTGTTGGATATCACGAGTCGATAACTTCATCATCTGATGACGACGACGGTGACGACGATGGTGATGGGTTGGAGTTGGAGTTGGAGTTGATGGACGCCACGTGTAAGCTTCCGGTGCTGATCGTTTCATCAAAAGCGCGGGAAATCACGAGTCGACGTAAATTTCAGCCTTTTGGAATTCCCATTTTGGAGTTTCGGACGAGGATGGTGGTGATGTTCTGTTTGTTTCTGCTACTTCTTCATGTAATGTGCTTTCGCAGAGCATCAGTCCACACTTTTTTCTAA

Protein Analysis

352

Amino Acids

40.37

Weight (kDa)

9.0

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 90 - 252 4.9e-53 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 78
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 2 cut(s) 612, 925
AccII CGCG 5 cut(s) 360, 465, 629, 653, 910
AccIII TCCGGA 1 cut(s) 575
AcoI YGGCCR 3 cut(s) 347, 453, 665
AcsI RAATTY 3 cut(s) 329, 932, 948
AcvI CACGTG 2 cut(s) 537, 873
AcyI GRCGYC 3 cut(s) 79, 759, 867
AfaI GTAC 5 cut(s) 345, 434, 470, 541, 632
AfiI CCNNNNNNNGG 3 cut(s) 505, 582, 768
AflIII ACRYGT 4 cut(s) 534, 536, 627, 872
AgsI TTSAA 3 cut(s) 19, 157, 179
AjiI CACGTC 1 cut(s) 682
AluBI AGCT 2 cut(s) 116, 880
AluI AGCT 2 cut(s) 116, 880
Alw26I GTCTC 3 cut(s) 284, 527, 725
AlwNI CAGNNNCTG 2 cut(s) 60, 119
Ama87I CYCGRG 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 575
AoxI GGCC 5 cut(s) 199, 313, 347, 453, 665
ApaI GGGCCC 1 cut(s) 317
ApeKI GCWGC 5 cut(s) 110, 113, 116, 119, 122
ApoI RAATTY 3 cut(s) 329, 932, 948
AspLEI GCGC 3 cut(s) 81, 465, 910
AspS9I GGNCC 9 cut(s) 199, 267, 298, 313, 314, 496, 589, 655, 688
AsuC2I CCSGG 3 cut(s) 396, 457, 692
AsuHPI GGTGA 5 cut(s) 520, 616, 833, 845, 994
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 6 cut(s) 267, 298, 496, 589, 655, 688
BaeGI GKGCMC 1 cut(s) 317
BanI GGYRCC 1 cut(s) 78
BanII GRGCYC 1 cut(s) 317
BauI CACGAG 2 cut(s) 785, 919
BbrPI CACGTG 2 cut(s) 537, 873
BbvI GCAGC 5 cut(s) 97, 103, 106, 109, 125
BccI CCATC 5 cut(s) 59, 824, 830, 856, 970
BceAI ACGGC 6 cut(s) 82, 216, 362, 468, 652, 746
BcnI CCSGG 3 cut(s) 396, 457, 692
BcoDI GTCTC 3 cut(s) 284, 527, 725
BfaI CTAG 1 cut(s) 485
BfmI CTRYAG 2 cut(s) 111, 526
BfoI RGCGCY 1 cut(s) 82
BglII AGATCT 1 cut(s) 12
Bme1390I CCNGG 3 cut(s) 396, 457, 692
Bme18I GGWCC 6 cut(s) 267, 298, 496, 589, 655, 688
BmeT110I CYCGRG 1 cut(s) 192
BmgBI CACGTC 1 cut(s) 682
BmgT120I GGNCC 9 cut(s) 199, 267, 298, 313, 314, 496, 589, 655, 688
BmiI GGNNCC 4 cut(s) 80, 315, 590, 657
BmrFI CCNGG 3 cut(s) 396, 457, 692
BmsI GCATC 1 cut(s) 1043
BoxI GACNNNNGTC 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 731
Bpu10I CCTNAGC 1 cut(s) 593
BpuMI CCSGG 3 cut(s) 396, 457, 692
BsaAI YACGTR 2 cut(s) 537, 873
BsaHI GRCGYC 3 cut(s) 79, 759, 867
BsaWI WCCGGW 3 cut(s) 498, 575, 883
BsaXI ACNNNNNCTCC 4 cut(s) 836, 842, 866, 872
Bsc4I CCNNNNNNNGG 3 cut(s) 505, 582, 768
Bse118I RCCGGY 1 cut(s) 489
Bse1I ACTGG 2 cut(s) 300, 606
BseAI TCCGGA 1 cut(s) 575
BseGI GGATG 1 cut(s) 981
BseLI CCNNNNNNNGG 3 cut(s) 505, 582, 768
BseMII CTCAG 2 cut(s) 111, 584
BseNI ACTGG 2 cut(s) 300, 606
BseRI GAGGAG 3 cut(s) 118, 715, 743
BseSI GKGCMC 1 cut(s) 317
BseX3I CGGCCG 3 cut(s) 347, 453, 665
BseXI GCAGC 5 cut(s) 97, 103, 106, 109, 125
Bsh1236I CGCG 5 cut(s) 360, 465, 629, 653, 910
Bsh1285I CGRYCG 3 cut(s) 350, 456, 668
BshFI GGCC 5 cut(s) 201, 315, 349, 455, 667
BshNI GGYRCC 1 cut(s) 78
BsiEI CGRYCG 3 cut(s) 350, 456, 668
BsiHKCI CYCGRG 1 cut(s) 192
BsiWI CGTACG 1 cut(s) 343
BslFI GGGAC 5 cut(s) 378, 545, 602, 641, 770
BslI CCNNNNNNNGG 3 cut(s) 505, 582, 768
BsmAI GTCTC 3 cut(s) 284, 527, 725
BsmBI CGTCTC 1 cut(s) 527
BsmFI GGGAC 5 cut(s) 378, 545, 602, 641, 770
BsnI GGCC 5 cut(s) 201, 315, 349, 455, 667
BsoBI CYCGRG 1 cut(s) 192
Bsp120I GGGCCC 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 317
Bsp13I TCCGGA 1 cut(s) 575
Bsp143I GATC 4 cut(s) 12, 280, 606, 891
BspANI GGCC 5 cut(s) 201, 315, 349, 455, 667
BspCNI CTCAG 2 cut(s) 110, 585
BspEI TCCGGA 1 cut(s) 575
BspFNI CGCG 5 cut(s) 360, 465, 629, 653, 910
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 4 cut(s) 80, 315, 590, 657
BspMAI CTGCAG 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 489
BsrI ACTGG 2 cut(s) 300, 606
BssAI RCCGGY 1 cut(s) 489
BssMI GATC 4 cut(s) 12, 280, 606, 891
BssNI GRCGYC 3 cut(s) 79, 759, 867
BssSI CACGAG 2 cut(s) 785, 919
Bst2BI CACGAG 2 cut(s) 785, 919
Bst4CI ACNGT 3 cut(s) 271, 521, 821
BstACI GRCGYC 3 cut(s) 79, 759, 867
BstAPI GCANNNNNTGC 1 cut(s) 119
BstBAI YACGTR 2 cut(s) 537, 873
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 97, 593
BstF5I GGATG 1 cut(s) 981
BstFNI CGCG 5 cut(s) 360, 465, 629, 653, 910
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 3 cut(s) 81, 465, 910
BstKTI GATC 4 cut(s) 15, 283, 609, 894
BstMAI GTCTC 3 cut(s) 284, 527, 725
BstMBI GATC 4 cut(s) 12, 280, 606, 891
BstMCI CGRYCG 3 cut(s) 350, 456, 668
BstPAI GACNNNNGTC 1 cut(s) 296
BstSCI CCNGG 3 cut(s) 394, 455, 690
BstSFI CTRYAG 2 cut(s) 111, 526
BstSLI GKGCMC 1 cut(s) 317
BstUI CGCG 5 cut(s) 360, 465, 629, 653, 910
BstV1I GCAGC 5 cut(s) 97, 103, 106, 109, 125
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BstZI CGGCCG 3 cut(s) 347, 453, 665
BsuRI GGCC 5 cut(s) 201, 315, 349, 455, 667
BtrI CACGTC 1 cut(s) 682
BtsCI GGATG 1 cut(s) 981
BtsIMutI CAGTG 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 317
CaiI CAGNNNCTG 2 cut(s) 60, 119
CciI TCATGA 1 cut(s) 369
CfoI GCGC 3 cut(s) 81, 465, 910
Cfr10I RCCGGY 1 cut(s) 489
Cfr13I GGNCC 9 cut(s) 199, 267, 298, 313, 314, 496, 589, 655, 688
CpoI CGGWCCG 2 cut(s) 267, 688
CseI GACGC 3 cut(s) 380, 767, 875
Csp6I GTAC 5 cut(s) 344, 433, 469, 540, 631
CspI CGGWCCG 2 cut(s) 267, 688
CviAII CATG 2 cut(s) 370, 1013
CviQI GTAC 5 cut(s) 344, 433, 469, 540, 631
DdeI CTNAG 2 cut(s) 97, 593
DinI GGCGCC 1 cut(s) 80
DpnI GATC 4 cut(s) 14, 282, 608, 893
DpnII GATC 4 cut(s) 12, 280, 606, 891
EaeI YGGCCR 3 cut(s) 347, 453, 665
EagI CGGCCG 3 cut(s) 347, 453, 665
EciI GGCGGA 1 cut(s) 701
EclXI CGGCCG 3 cut(s) 347, 453, 665
Eco24I GRGCYC 1 cut(s) 317
Eco32I GATATC 2 cut(s) 513, 782
Eco47I GGWCC 6 cut(s) 267, 298, 496, 589, 655, 688
Eco52I CGGCCG 3 cut(s) 347, 453, 665
Eco72I CACGTG 2 cut(s) 537, 873
Eco88I CYCGRG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 589
EcoRI GAATTC 1 cut(s) 948
EcoRV GATATC 2 cut(s) 513, 782
EcoT38I GRGCYC 1 cut(s) 317
EgeI GGCGCC 1 cut(s) 80
EheI GGCGCC 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 2 cut(s) 373, 1016
FaiI YATR 5 cut(s) 38, 71, 104, 371, 1014
FaqI GGGAC 5 cut(s) 378, 545, 602, 641, 770
FatI CATG 2 cut(s) 369, 1012
FauI CCCGC 4 cut(s) 152, 324, 498, 903
FblI GTMKAC 2 cut(s) 612, 925
FokI GGATG 1 cut(s) 988
FriOI GRGCYC 1 cut(s) 317
FspBI CTAG 1 cut(s) 485
GlaI GCGC 3 cut(s) 80, 464, 909
GsuI CTGGAG 1 cut(s) 731
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 5 cut(s) 201, 315, 349, 455, 667
HgaI GACGC 3 cut(s) 380, 767, 875
HhaI GCGC 3 cut(s) 81, 465, 910
Hin1I GRCGYC 3 cut(s) 79, 759, 867
Hin1II CATG 2 cut(s) 373, 1016
Hin6I GCGC 3 cut(s) 79, 463, 908
HinP1I GCGC 3 cut(s) 79, 463, 908
HincII GTYRAC 2 cut(s) 613, 926
HindII GTYRAC 2 cut(s) 613, 926
HindIII AAGCTT 1 cut(s) 878
HinfI GANTC 5 cut(s) 209, 355, 733, 788, 922
HphI GGTGA 5 cut(s) 520, 616, 833, 845, 994
Hpy166II GTNNAC 7 cut(s) 403, 450, 540, 613, 676, 926, 1042
Hpy188I TCNGA 3 cut(s) 214, 808, 969
Hpy188III TCNNGA 8 cut(s) 16, 284, 370, 385, 562, 576, 785, 919
Hpy8I GTNNAC 7 cut(s) 403, 450, 540, 613, 676, 926, 1042
HpyAV CCTTC 1 cut(s) 559
HpyCH4III ACNGT 3 cut(s) 271, 521, 821
HpyCH4IV ACGT 5 cut(s) 381, 536, 681, 872, 928
HpyCH4V TGCA 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 97, 593
HpySE526I ACGT 5 cut(s) 381, 536, 681, 872, 928
Hsp92I GRCGYC 3 cut(s) 79, 759, 867
Hsp92II CATG 2 cut(s) 373, 1016
HspAI GCGC 3 cut(s) 79, 463, 908
KasI GGCGCC 1 cut(s) 78
Kpn2I TCCGGA 1 cut(s) 575
Kzo9I GATC 4 cut(s) 12, 280, 606, 891
LmnI GCTCC 1 cut(s) 243
Lsp1109I GCAGC 5 cut(s) 97, 103, 106, 109, 125
LweI GCATC 1 cut(s) 1043
MaeI CTAG 1 cut(s) 485
MaeII ACGT 5 cut(s) 381, 536, 681, 872, 928
MaeIII GTNAC 4 cut(s) 62, 307, 743, 821
MalI GATC 4 cut(s) 14, 282, 608, 893
MbiI CCGCTC 1 cut(s) 238
MboI GATC 4 cut(s) 12, 280, 606, 891
MboII GAAGA 4 cut(s) 31, 364, 709, 1001
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 5 cut(s) 215, 329, 419, 932, 948
MluI ACGCGT 1 cut(s) 627
Mly113I GGCGCC 1 cut(s) 79
MlyI GAGTC 3 cut(s) 727, 797, 931
MmeI TCCRAC 4 cut(s) 757, 822, 828, 834
MroI TCCGGA 1 cut(s) 575
MseI TTAA 2 cut(s) 168, 218
MspA1I CMGCKG 3 cut(s) 60, 116, 247
MspR9I CCNGG 3 cut(s) 396, 457, 692
MvnI CGCG 5 cut(s) 360, 465, 629, 653, 910
NarI GGCGCC 1 cut(s) 79
NciI CCSGG 3 cut(s) 396, 457, 692
NdeII GATC 4 cut(s) 12, 280, 606, 891
NlaIII CATG 2 cut(s) 373, 1016
NlaIV GGNNCC 4 cut(s) 80, 315, 590, 657
NmuCI GTSAC 4 cut(s) 62, 307, 743, 821
PagI TCATGA 1 cut(s) 369
PcsI WCGNNNNNNNCGW 2 cut(s) 822, 825
PfeI GAWTC 2 cut(s) 209, 355
Pfl23II CGTACG 1 cut(s) 343
PflFI GACNNNGTC 1 cut(s) 338
PleI GAGTC 3 cut(s) 727, 796, 930
PluTI GGCGCC 1 cut(s) 82
PmaCI CACGTG 2 cut(s) 537, 873
PmlI CACGTG 2 cut(s) 537, 873
PpsI GAGTC 3 cut(s) 727, 796, 930
Ppu21I YACGTR 2 cut(s) 537, 873
PpuMI RGGWCCY 1 cut(s) 589
PshAI GACNNNNGTC 1 cut(s) 296
PsiI TTATAA 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 589
PspCI CACGTG 2 cut(s) 537, 873
PspLI CGTACG 1 cut(s) 343
PspN4I GGNNCC 4 cut(s) 80, 315, 590, 657
PspOMI GGGCCC 1 cut(s) 313
PspPI GGNCC 9 cut(s) 199, 267, 298, 313, 314, 496, 589, 655, 688
PspPPI RGGWCCY 1 cut(s) 589
PstI CTGCAG 1 cut(s) 115
PstNI CAGNNNCTG 2 cut(s) 60, 119
PsuI RGATCY 1 cut(s) 12
PsyI GACNNNGTC 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 5 cut(s) 345, 434, 470, 541, 632
RsaNI GTAC 5 cut(s) 344, 433, 469, 540, 631
Rsr2I CGGWCCG 2 cut(s) 267, 688
RsrII CGGWCCG 2 cut(s) 267, 688
SalI GTCGAC 2 cut(s) 611, 924
SaqAI TTAA 2 cut(s) 168, 218
Sau3AI GATC 4 cut(s) 12, 280, 606, 891
Sau96I GGNCC 9 cut(s) 199, 267, 298, 313, 314, 496, 589, 655, 688
SchI GAGTC 3 cut(s) 727, 797, 931
ScrFI CCNGG 3 cut(s) 396, 457, 692
SduI GDGCHC 1 cut(s) 317
SfaNI GCATC 1 cut(s) 1043
SfcI CTRYAG 2 cut(s) 111, 526
SfoI GGCGCC 1 cut(s) 80
SgrDI CGTCGACG 1 cut(s) 611
SinI GGWCC 6 cut(s) 267, 298, 496, 589, 655, 688
Sse9I AATT 5 cut(s) 215, 329, 419, 932, 948
SspDI GGCGCC 1 cut(s) 78
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 3 cut(s) 394, 455, 690
TaaI ACNGT 3 cut(s) 271, 521, 821
TaiI ACGT 5 cut(s) 384, 539, 684, 875, 931
TaqI TCGA 6 cut(s) 33, 285, 612, 720, 791, 925
TasI AATT 5 cut(s) 215, 329, 419, 932, 948
TauI GCSGC 5 cut(s) 29, 60, 79, 322, 363
TfiI GAWTC 2 cut(s) 209, 355
Tru1I TTAA 2 cut(s) 168, 218
Tru9I TTAA 2 cut(s) 168, 218
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 4 cut(s) 62, 307, 743, 821
TseI GCWGC 5 cut(s) 110, 113, 116, 119, 122
Tsp45I GTSAC 4 cut(s) 62, 307, 743, 821
TspDTI ATGAA 4 cut(s) 163, 789, 888, 1001
TspGWI ACGGA 2 cut(s) 295, 557
TspRI CASTG 1 cut(s) 300
Tth111I GACNNNGTC 1 cut(s) 338
VpaK11BI GGWCC 6 cut(s) 267, 298, 496, 589, 655, 688
XapI RAATTY 3 cut(s) 329, 932, 948
XmiI GTMKAC 2 cut(s) 612, 925
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.