FvH4_3g36710

Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
31466307 .. 31470644
4338 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36710.t1

Sequence Viewer

Length: 1773 bp
ATGGTGTCCAAAATAATTAAGATTAGGGCAAACAAGAGTTTAGCCATGAAGAACCGCCACGGCAAAAGGTGGCACCACCGCCGCAACTCCTCAGTCAAGAAGGCAGCCGCCGCCTCCAATGTCATACTTTCCGGCATTGACACCGACAAAGGCAGCTTAGATATCCTAACTCCAGACCCGGCCTGGCCCGAACCCGGACCTGAAACAACATGCCCCTCACTTCCGCCGTTAACCTCACCGGAGAAGAGAACCGTGTTTCTTGATCTGGACGAAACACTGGTGCACACTTCGGCCACGTTGCCCTATCGCTTCGACTTCCTCGTCCGGCCCATTATTCGGGACACCGAGATGACCTTCTACGTGATCAAACGTCCCGGAGTTGACCAGTTTCTGCAAAAGCTGGCGGAGAAGTACGAGGTGGTGGTGTTCACGGCGGGGATGAGAGAGTACGCTTCTCTGGTGCTGGACCGGCTGGACAGGCAGGGCTTCATATCCCACCGCCTTTACCGCGACTCATGCAAGGAGGTGTACGGCAAGTTCGTCAAAGACCTGTCGGGTTTGGGACGTGACTTGCGGCGAGTGGTGATCGTGGACGATAATCCCAACTCGTATTTTCTCCAATCGGAAAATGGGATACCGGTCCGGCCGTTCGTCGGTGACATGGAGGACGGGGAGCTGGGGAGGTTGTTGAAGTTTTTTGAGGGCGAGGGGTCTGAGGACATTAGGGATGCTGTGAGAGAGTATGTTAATGACGAAGGATGGATTACCGTTGTTGATGATGACGACGACGACGATGATAGTTGTTGTAGTGATAATGATGATGACGATGATGAGGAGGAGGAGTTGGAGAAGGGGAATGGGAAGTTTACTAATGCTCCAGTATTAACAACGGTTAATTCATCAACACCATGCTGCTTGATTAGTCTGCATGAATATTATTATCCATCGGCAAAGCCAGTAGCTATGGAGTATTGGATCAAGATGTTTTTTGATGGAAATTCCAGCAATTTGGACAACAACGCATCAAGTGAAATAGCTGATGAAAAATACGATTTTGATGGCTTTATTAGCCAACATGCAAGAGATTTTTCTTATGAGGGTCCAACTTTGGAATACCAAGAAGATGAGACAAGATCAATGAAAAGCTGTCAAGAACACGAAGCTAATTGGACTTCTCTATCATCACCTTCTCTTGTGGAAGAAACAAGGCTATCATCAACGTCACTCGAAGGTAACATGGTTGACTATAGAGATGTAGGTAATAATAAAAACATGCCTATATTTGAGAAGGAAAAATCTGAATTAGGATTATCTTGTGAAAAAGAAGTTTTTGATCCCTCGATCTTTGACAATGAGATTGATTATTCTCTAGATACTGAGCCTATGTTTGATTTCAACGTTGAGCCCATTTATGATAACTATGAAGATGACGAACCAATTCATGGCTTCGATCTACTCACAGGGTTAACACAACAGCAGAAAGTTGATTATTTAAGTGAGGAGCTTATCCACTTTGACATGATTGTCAGAAATAAAGCCGACTTAGAAAAATCACAATCGGCTAAATTTAAAATAAAAGCTGAAACTGATACTCCAAGTGCATATGAGCTTCAAAATTCGGCCTACATAATGGCCGAATATCAAGAACATACTATAAAGGACCCAAACATGATGCTACATGGCATGCAAGATCTTGAACCAAAGGATGGAAGCAAAGAAATTTCAAAATTTGCAATAAAGCATCGTTGGCCTCCTCCTAGAGAGTTGGAATAA

Protein Analysis

591

Amino Acids

67.54

Weight (kDa)

4.59

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 84 - 235 9.4e-52 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 320, 1523
AccB1I GGYRCC 1 cut(s) 72
AccB7I CCANNNNNTGG 2 cut(s) 1442, 1706
AccII CGCG 1 cut(s) 510
AclI AACGTT 1 cut(s) 1398
AclWI GGATC 2 cut(s) 983, 1328
AcoI YGGCCR 3 cut(s) 291, 644, 1632
AcsI RAATTY 5 cut(s) 997, 1565, 1615, 1719, 1727
AfaI GTAC 3 cut(s) 413, 449, 530
AfiI CCNNNNNNNGG 5 cut(s) 194, 336, 653, 1442, 1706
AgeI ACCGGT 1 cut(s) 637
AgsI TTSAA 5 cut(s) 691, 1396, 1613, 1697, 1725
AjiI CACGTC 1 cut(s) 566
AjnI CCWGG 1 cut(s) 182
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 1121
Alw44I GTGCAC 1 cut(s) 281
AlwI GGATC 2 cut(s) 983, 1328
AlwNI CAGNNNCTG 1 cut(s) 391
AoxI GGCC 8 cut(s) 180, 185, 291, 326, 644, 1620, 1632, 1748
ApaLI GTGCAC 1 cut(s) 281
ApeKI GCWGC 3 cut(s) 104, 153, 912
ApoI RAATTY 5 cut(s) 997, 1565, 1615, 1719, 1727
AsiGI ACCGGT 1 cut(s) 637
Asp700I GAANNNNTTC 1 cut(s) 1437
AspS9I GGNCC 7 cut(s) 186, 197, 327, 466, 640, 1100, 1660
AsuC2I CCSGG 3 cut(s) 179, 195, 375
AsuHPI GGTGA 4 cut(s) 228, 595, 668, 1176
AvaII GGWCC 5 cut(s) 197, 466, 640, 1100, 1660
BaeGI GKGCMC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 1407
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 3 cut(s) 116, 165, 899
BccI CCATC 5 cut(s) 753, 952, 986, 1052, 1700
BceAI ACGGC 5 cut(s) 76, 211, 447, 547, 631
BciT130I CCWGG 1 cut(s) 184
BciVI GTATCC 1 cut(s) 627
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 3 cut(s) 179, 195, 375
BcoDI GTCTC 1 cut(s) 1121
BfaI CTAG 2 cut(s) 1370, 1758
BfmI CTRYAG 1 cut(s) 1246
BfuI GTATCC 1 cut(s) 627
BglII AGATCT 1 cut(s) 1690
BisI GCNGC 7 cut(s) 82, 105, 108, 111, 154, 575, 913
BlsI GCNGC 7 cut(s) 83, 106, 109, 112, 155, 576, 914
Bme1390I CCNGG 4 cut(s) 179, 184, 195, 375
Bme18I GGWCC 5 cut(s) 197, 466, 640, 1100, 1660
BmgBI CACGTC 1 cut(s) 566
BmgT120I GGNCC 7 cut(s) 186, 197, 327, 466, 640, 1100, 1660
BmiI GGNNCC 3 cut(s) 74, 1101, 1662
BmrFI CCNGG 4 cut(s) 179, 184, 195, 375
BmsI GCATC 4 cut(s) 718, 1031, 1662, 1750
BpmI CTGGAG 2 cut(s) 156, 861
BpuMI CCSGG 3 cut(s) 179, 195, 375
BsaAI YACGTR 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 2 cut(s) 238, 637
BsaXI ACNNNNNCTCC 6 cut(s) 827, 857, 859, 889, 1576, 1606
Bsc4I CCNNNNNNNGG 5 cut(s) 194, 336, 653, 1442, 1706
Bse118I RCCGGY 2 cut(s) 468, 637
Bse1I ACTGG 4 cut(s) 282, 385, 878, 956
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 4 cut(s) 444, 733, 764, 1711
BseLI CCNNNNNNNGG 5 cut(s) 194, 336, 653, 1442, 1706
BseMII CTCAG 3 cut(s) 105, 705, 1368
BseNI ACTGG 4 cut(s) 282, 385, 878, 956
BseRI GAGGAG 6 cut(s) 79, 848, 851, 854, 1514, 1743
BseSI GKGCMC 1 cut(s) 285
BseX3I CGGCCG 1 cut(s) 644
BseXI GCAGC 3 cut(s) 116, 165, 899
BseYI CCCAGC 1 cut(s) 676
Bsh1236I CGCG 1 cut(s) 510
Bsh1285I CGRYCG 1 cut(s) 647
BshFI GGCC 8 cut(s) 182, 187, 293, 328, 646, 1622, 1634, 1750
BshNI GGYRCC 1 cut(s) 72
BshTI ACCGGT 1 cut(s) 637
BsiEI CGRYCG 1 cut(s) 647
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 9 cut(s) 132, 179, 195, 239, 325, 375, 469, 638, 643
BslFI GGGAC 3 cut(s) 353, 357, 576
BslI CCNNNNNNNGG 5 cut(s) 194, 336, 653, 1442, 1706
BsmAI GTCTC 1 cut(s) 1121
BsmFI GGGAC 3 cut(s) 353, 357, 576
BsnI GGCC 8 cut(s) 182, 187, 293, 328, 646, 1622, 1634, 1750
Bsp1286I GDGCHC 2 cut(s) 285, 1407
Bsp143I GATC 9 cut(s) 262, 363, 585, 975, 1133, 1333, 1341, 1450, 1690
BspANI GGCC 8 cut(s) 182, 187, 293, 328, 646, 1622, 1634, 1750
BspCNI CTCAG 3 cut(s) 104, 706, 1369
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 3 cut(s) 74, 1101, 1662
BspPI GGATC 2 cut(s) 983, 1328
BspT107I GGYRCC 1 cut(s) 72
BsrFI RCCGGY 2 cut(s) 468, 637
BsrI ACTGG 4 cut(s) 282, 385, 878, 956
BssAI RCCGGY 2 cut(s) 468, 637
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 9 cut(s) 262, 363, 585, 975, 1133, 1333, 1341, 1450, 1690
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 253, 769, 892
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 402, 1685
BstDEI CTNAG 5 cut(s) 91, 157, 714, 1377, 1543
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 4 cut(s) 444, 733, 764, 1711
BstFNI CGCG 1 cut(s) 510
BstKTI GATC 9 cut(s) 265, 366, 588, 978, 1136, 1336, 1344, 1453, 1693
BstMAI GTCTC 1 cut(s) 1121
BstMBI GATC 9 cut(s) 262, 363, 585, 975, 1133, 1333, 1341, 1450, 1690
BstMCI CGRYCG 1 cut(s) 647
BstMWI GCNNNNNNNGC 7 cut(s) 110, 469, 478, 507, 516, 1068, 1747
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 4 cut(s) 213, 1079, 1276, 1687
BstSCI CCNGG 4 cut(s) 177, 182, 193, 373
BstSFI CTRYAG 1 cut(s) 1246
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 116, 165, 899
BstX2I RGATCY 1 cut(s) 1690
BstXI CCANNNNNNTGG 1 cut(s) 1009
BstYI RGATCY 1 cut(s) 1690
BstZI CGGCCG 1 cut(s) 644
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 8 cut(s) 182, 187, 293, 328, 646, 1622, 1634, 1750
BtgI CCRYGG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 566
BtsCI GGATG 4 cut(s) 444, 733, 764, 1711
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 2 cut(s) 402, 1685
CaiI CAGNNNCTG 1 cut(s) 391
Cfr10I RCCGGY 2 cut(s) 468, 637
Cfr13I GGNCC 7 cut(s) 186, 197, 327, 466, 640, 1100, 1660
CpoI CGGWCCG 1 cut(s) 640
Csp6I GTAC 3 cut(s) 412, 448, 529
CspAI ACCGGT 1 cut(s) 637
CspI CGGWCCG 1 cut(s) 640
CviQI GTAC 3 cut(s) 412, 448, 529
DdeI CTNAG 5 cut(s) 91, 157, 714, 1377, 1543
DpnI GATC 9 cut(s) 264, 365, 587, 977, 1135, 1335, 1343, 1452, 1692
DpnII GATC 9 cut(s) 262, 363, 585, 975, 1133, 1333, 1341, 1450, 1690
DraI TTTAAA 1 cut(s) 1570
DrdI GACNNNNNNGTC 2 cut(s) 320, 1523
DseDI GACNNNNNNGTC 2 cut(s) 320, 1523
EaeI YGGCCR 3 cut(s) 291, 644, 1632
EagI CGGCCG 1 cut(s) 644
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EciI GGCGGA 2 cut(s) 213, 419
EclXI CGGCCG 1 cut(s) 644
Eco24I GRGCYC 1 cut(s) 1407
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 5 cut(s) 197, 466, 640, 1100, 1660
Eco52I CGGCCG 1 cut(s) 644
EcoO109I RGGNCCY 1 cut(s) 1660
EcoRII CCWGG 1 cut(s) 182
EcoRV GATATC 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 1407
FaqI GGGAC 3 cut(s) 353, 357, 576
FauI CCCGC 1 cut(s) 427
FauNDI CATATG 1 cut(s) 1603
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 7 cut(s) 82, 105, 108, 111, 154, 575, 913
FokI GGATG 4 cut(s) 451, 740, 771, 1718
FriOI GRGCYC 1 cut(s) 1407
Fsp4HI GCNGC 7 cut(s) 82, 105, 108, 111, 154, 575, 913
FspBI CTAG 2 cut(s) 1370, 1758
GluI GCNGC 7 cut(s) 82, 105, 108, 111, 154, 575, 913
GsaI CCCAGC 1 cut(s) 680
GsuI CTGGAG 2 cut(s) 156, 861
HaeIII GGCC 8 cut(s) 182, 187, 293, 328, 646, 1622, 1634, 1750
HapII CCGG 9 cut(s) 132, 179, 195, 239, 325, 375, 469, 638, 643
HincII GTYRAC 4 cut(s) 231, 382, 1243, 1467
HindII GTYRAC 4 cut(s) 231, 382, 1243, 1467
HinfI GANTC 1 cut(s) 512
HpaI GTTAAC 2 cut(s) 231, 1467
HpaII CCGG 9 cut(s) 132, 179, 195, 239, 325, 375, 469, 638, 643
HphI GGTGA 4 cut(s) 228, 595, 668, 1176
Hpy166II GTNNAC 9 cut(s) 231, 283, 382, 429, 529, 592, 867, 1243, 1467
Hpy188I TCNGA 4 cut(s) 625, 715, 1300, 1529
Hpy8I GTNNAC 9 cut(s) 231, 283, 382, 429, 529, 592, 867, 1243, 1467
Hpy99I CGWCG 4 cut(s) 656, 788, 791, 794
HpyAV CCTTC 7 cut(s) 94, 364, 749, 844, 1197, 1223, 1282
HpyCH4III ACNGT 3 cut(s) 253, 769, 892
HpyCH4IV ACGT 6 cut(s) 296, 360, 370, 565, 1220, 1398
HpyCH4V TGCA 8 cut(s) 283, 394, 519, 928, 1079, 1601, 1687, 1733
HpyF10VI GCNNNNNNNGC 7 cut(s) 110, 469, 478, 507, 516, 1068, 1747
HpyF3I CTNAG 5 cut(s) 91, 157, 714, 1377, 1543
HpySE526I ACGT 6 cut(s) 296, 360, 370, 565, 1220, 1398
Ksp22I TGATCA 1 cut(s) 363
KspAI GTTAAC 2 cut(s) 231, 1467
Kzo9I GATC 9 cut(s) 262, 363, 585, 975, 1133, 1333, 1341, 1450, 1690
LmnI GCTCC 3 cut(s) 673, 880, 1501
Lsp1109I GCAGC 3 cut(s) 116, 165, 899
LweI GCATC 4 cut(s) 718, 1031, 1662, 1750
MaeI CTAG 2 cut(s) 1370, 1758
MaeII ACGT 6 cut(s) 296, 360, 370, 565, 1220, 1398
MaeIII GTNAC 4 cut(s) 566, 656, 1221, 1232
MalI GATC 9 cut(s) 264, 365, 587, 977, 1135, 1335, 1343, 1452, 1692
MboI GATC 9 cut(s) 262, 363, 585, 975, 1133, 1333, 1341, 1450, 1690
MboII GAAGA 5 cut(s) 61, 256, 1133, 1211, 1436
MflI RGATCY 1 cut(s) 1690
MhlI GDGCHC 2 cut(s) 285, 1407
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 3 cut(s) 825, 1127, 1746
MroXI GAANNNNTTC 1 cut(s) 1437
MseI TTAA 8 cut(s) 18, 230, 747, 884, 894, 1466, 1493, 1569
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 9 cut(s) 132, 179, 195, 239, 325, 375, 469, 638, 643
MspR9I CCNGG 4 cut(s) 179, 184, 195, 375
MvaI CCWGG 1 cut(s) 184
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 7 cut(s) 110, 469, 478, 507, 516, 1068, 1747
NciI CCSGG 3 cut(s) 179, 195, 375
NdeI CATATG 1 cut(s) 1603
NdeII GATC 9 cut(s) 262, 363, 585, 975, 1133, 1333, 1341, 1450, 1690
NlaIV GGNNCC 3 cut(s) 74, 1101, 1662
NmuCI GTSAC 3 cut(s) 566, 656, 1221
NspI RCATGY 4 cut(s) 213, 1079, 1276, 1687
PaeI GCATGC 1 cut(s) 1687
PcsI WCGNNNNNNNCGW 3 cut(s) 318, 537, 789
PdmI GAANNNNTTC 1 cut(s) 1437
PflMI CCANNNNNTGG 2 cut(s) 1442, 1706
PfoI TCCNGGA 1 cut(s) 373
PinAI ACCGGT 1 cut(s) 637
PkrI GCNGC 7 cut(s) 83, 106, 109, 112, 155, 576, 914
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
Ppu21I YACGTR 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 1660
Psp1406I AACGTT 1 cut(s) 1398
Psp5II RGGWCCY 1 cut(s) 1660
Psp6I CCWGG 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 676
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 3 cut(s) 74, 1101, 1662
PspPI GGNCC 7 cut(s) 186, 197, 327, 466, 640, 1100, 1660
PspPPI RGGWCCY 1 cut(s) 1660
PsrI GAACNNNNNNTAC 2 cut(s) 521, 553
PstNI CAGNNNCTG 1 cut(s) 391
PsuI RGATCY 1 cut(s) 1690
RsaI GTAC 3 cut(s) 413, 449, 530
RsaNI GTAC 3 cut(s) 412, 448, 529
RseI CAYNNNNRTG 1 cut(s) 347
Rsr2I CGGWCCG 1 cut(s) 640
RsrII CGGWCCG 1 cut(s) 640
SaqAI TTAA 8 cut(s) 18, 230, 747, 884, 894, 1466, 1493, 1569
SatI GCNGC 7 cut(s) 82, 105, 108, 111, 154, 575, 913
Sau3AI GATC 9 cut(s) 262, 363, 585, 975, 1133, 1333, 1341, 1450, 1690
Sau96I GGNCC 7 cut(s) 186, 197, 327, 466, 640, 1100, 1660
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 4 cut(s) 179, 184, 195, 375
SduI GDGCHC 2 cut(s) 285, 1407
SfaNI GCATC 4 cut(s) 718, 1031, 1662, 1750
SfcI CTRYAG 1 cut(s) 1246
SinI GGWCC 5 cut(s) 197, 466, 640, 1100, 1660
SmiMI CAYNNNNRTG 1 cut(s) 347
SphI GCATGC 1 cut(s) 1687
SspI AATATT 1 cut(s) 935
SspMI CTAG 2 cut(s) 1370, 1758
StyD4I CCNGG 4 cut(s) 177, 182, 193, 373
TaaI ACNGT 3 cut(s) 253, 769, 892
TaiI ACGT 6 cut(s) 299, 363, 373, 568, 1223, 1401
TaqI TCGA 4 cut(s) 312, 1227, 1340, 1449
TauI GCSGC 4 cut(s) 84, 110, 113, 577
Tru1I TTAA 8 cut(s) 18, 230, 747, 884, 894, 1466, 1493, 1569
Tru9I TTAA 8 cut(s) 18, 230, 747, 884, 894, 1466, 1493, 1569
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 3 cut(s) 566, 656, 1221
TseI GCWGC 3 cut(s) 104, 153, 912
Tsp45I GTSAC 3 cut(s) 566, 656, 1221
TspDTI ATGAA 8 cut(s) 62, 478, 888, 945, 1056, 1154, 1430, 1437
TspRI CASTG 1 cut(s) 282
Van91I CCANNNNNTGG 2 cut(s) 1442, 1706
VneI GTGCAC 1 cut(s) 281
VpaK11BI GGWCC 5 cut(s) 197, 466, 640, 1100, 1660
XapI RAATTY 5 cut(s) 997, 1565, 1615, 1719, 1727
XbaI TCTAGA 1 cut(s) 1369
XceI RCATGY 4 cut(s) 213, 1079, 1276, 1687
XcmI CCANNNNNNNNNTGG 2 cut(s) 180, 626
XmnI GAANNNNTTC 1 cut(s) 1437
XspI CTAG 2 cut(s) 1370, 1758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.