Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006661

Physical Location & Seq

Genomic Coordinates Reverse (-)

3324392 .. 3325240

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G068500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTGTCCAAGATTGTGAAGAAGAGCGCCAACAGGCGGCGCACCCGCGGCAAGTCCTCGGCCAAAAAGGCCGCAGCCGCGGCCTCCTCGGCTGTGCTCTCCTCGATCTTCACTTGCCAGCGCCGCCTCATCAAGCTCTTCACCAAGCTAGCGCGAATAGGGACCCCCAACCGCCACAAAGGCTTCAAGATCCTCAAGAAATCCCAAATCCACGAGCCCGAATCCGGATCCGAAGACCCGATCCAACGCAATCTTTTCTTCGACACCCCGCTCCCACCGCTGGTCTCAGCGGAGAAGCAGACCGTGTTTCTTGATCTCGATGAGACGCTGGTTCACTCCCAGGCCGAGCCGCCGCCGGAGAAGTACGATTTCGTCATACGGCCGAATATCGACGGCGTAGCCATGAATTTCTACGTGCTGAAGCGGCCTGGTGTGGACGAGTTGTTGGAGAATCTTGCAGAGAAGTACGAGTTGGTAGTGTTCACGGCCGGGTTGAGAGAGTACGCGTCGCTGGTGCTGGACCGGTTGGACCGGAACCGGGTCATTTCGCACCGGCTCTACAGGGACGCGTGTAAAGAAGTGGATGGGAAGTTGGTGAAGGACTTGTCCGGGTTAGGGAGGGACTTGAGCCGGGCGGTGATTGTGGATGATAATCCAAATTCGTATTCTTTACAACCGGAGAACGCCGTTCCAGTCCGACCGTTTGTGGATGACATGGCAGACCAGGAGCTGGGGAAGTTGATGGAGTTCTTTGATGGGTTGAATTGTGATGATATGAGGGATGCTGTGAAGCAGTTTGTTGCGGCTGCTGGCAGCGGCGGCGGAGCCAAAGTTGATGAAGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

283

Amino Acids

31.35

Weight (kDa)

8.63

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29770 AT1G29780 AT5G45700
fragaria_vesca	FvH4_3g07100 FvH4_3g07110 FvH4_3g36710
malus_domestica	MD00G1007300.v1.1 MD00G1007500.v1.1 MD10G1273900.v1.1 MD10G1274000.v1.1
prunus_persica	Prupe.4G068500_v2.0.a1 Prupe.4G068600_v2.0.a1
pyrus_communis	pycom05g27270 pycom10g22870
rosa_chinensis	RchiOBHm_Chr5g0012001 RchiOBHm_Chr5g0012011
rosa_laevigata	RLG00000031878
rosa_multiflora	Rmu_co8217880.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064580
rosa_rugosa	Rorug04G0460300 Rorug04G0460300
rosa_samantha	Rh5BG088100 Rh5BG088200 Rh5CG102000 Rh5DG088700
rosa_wichuraiana	Rw5G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	730
AccBSI	CCGCTC	1 cut(s)	271
AccII	CGCG	5 cut(s)	48, 80, 154, 506, 569
AccIII	TCCGGA	1 cut(s)	224
AclWI	GGATC	4 cut(s)	184, 222, 235, 235
AcoI	YGGCCR	3 cut(s)	60, 380, 486
AcsI	RAATTY	2 cut(s)	406, 658
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	3 cut(s)	365, 467, 503
AfiI	CCNNNNNNNGG	6 cut(s)	36, 224, 280, 538, 615, 730
AflIII	ACRYGT	2 cut(s)	504, 567
AgeI	ACCGGT	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	187, 763
AjnI	CCWGG	3 cut(s)	339, 427, 723
AjuI	GAANNNNNNNTTGG	4 cut(s)	455, 487, 649, 681
AluBI	AGCT	3 cut(s)	136, 148, 730
AluI	AGCT	3 cut(s)	136, 148, 730
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	2 cut(s)	289, 317
AlwI	GGATC	4 cut(s)	184, 222, 235, 235
AlwNI	CAGNNNCTG	1 cut(s)	730
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	7 cut(s)	60, 69, 81, 342, 380, 425, 486
ApeKI	GCWGC	3 cut(s)	74, 806, 813
ApoI	RAATTY	2 cut(s)	406, 658
AsiGI	ACCGGT	1 cut(s)	522
AspLEI	GCGC	4 cut(s)	29, 42, 123, 154
AspS9I	GGNCC	3 cut(s)	162, 520, 529
AsuC2I	CCSGG	4 cut(s)	490, 539, 610, 632
AsuHPI	GGTGA	3 cut(s)	133, 607, 649
AsuNHI	GCTAGC	1 cut(s)	148
AvaII	GGWCC	3 cut(s)	162, 520, 529
BamHI	GGATCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	86, 793, 825
BccI	CCATC	3 cut(s)	578, 736, 749
BceAI	ACGGC	4 cut(s)	395, 409, 501, 671
BciT130I	CCWGG	3 cut(s)	341, 429, 725
BcnI	CCSGG	4 cut(s)	490, 539, 610, 632
BcoDI	GTCTC	2 cut(s)	289, 317
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	559
BfoI	RGCGCY	2 cut(s)	30, 124
BglI	GCCNNNNNGGC	3 cut(s)	68, 89, 180
Bme1390I	CCNGG	7 cut(s)	341, 429, 490, 539, 610, 632, 725
Bme18I	GGWCC	3 cut(s)	162, 520, 529
BmgT120I	GGNCC	3 cut(s)	162, 520, 529
BmiI	GGNNCC	5 cut(s)	163, 164, 229, 536, 826
BmrFI	CCNGG	7 cut(s)	341, 429, 490, 539, 610, 632, 725
BmsI	GCATC	1 cut(s)	772
BmtI	GCTAGC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	179, 646
BpuMI	CCSGG	4 cut(s)	490, 539, 610, 632
BsaAI	YACGTR	1 cut(s)	415
BsaBI	GATNNNNATC	1 cut(s)	651
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	5 cut(s)	46, 57, 78, 87, 339
BsaWI	WCCGGW	4 cut(s)	224, 522, 531, 676
BsaXI	ACNNNNNCTCC	2 cut(s)	816, 846
Bsc4I	CCNNNNNNNGG	6 cut(s)	36, 224, 280, 538, 615, 730
Bse118I	RCCGGY	2 cut(s)	522, 552
Bse1I	ACTGG	1 cut(s)	692
Bse8I	GATNNNNATC	1 cut(s)	651
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	3 cut(s)	341, 429, 725
BseDI	CCNNGG	5 cut(s)	46, 57, 78, 87, 339
BseGI	GGATG	4 cut(s)	589, 652, 715, 787
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	6 cut(s)	36, 224, 280, 538, 615, 730
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	692
BseRI	GAGGAG	2 cut(s)	76, 91
BseX3I	CGGCCG	2 cut(s)	380, 486
BseXI	GCAGC	3 cut(s)	86, 793, 825
BseYI	CCCAGC	1 cut(s)	730
Bsh1236I	CGCG	5 cut(s)	48, 80, 154, 506, 569
Bsh1285I	CGRYCG	3 cut(s)	383, 489, 701
BshFI	GGCC	7 cut(s)	62, 71, 83, 344, 382, 427, 488
BshTI	ACCGGT	1 cut(s)	522
BsiEI	CGRYCG	3 cut(s)	383, 489, 701
BsiHKAI	GWGCWC	1 cut(s)	99
BslFI	GGGAC	3 cut(s)	175, 578, 635
BslI	CCNNNNNNNGG	6 cut(s)	36, 224, 280, 538, 615, 730
BsmAI	GTCTC	2 cut(s)	289, 317
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	3 cut(s)	175, 578, 635
BsnI	GGCC	7 cut(s)	62, 71, 83, 344, 382, 427, 488
Bso31I	GGTCTC	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	99, 219
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	5 cut(s)	105, 189, 227, 240, 313
BspANI	GGCC	7 cut(s)	62, 71, 83, 344, 382, 427, 488
BspCNI	CTCAG	1 cut(s)	299
BspEI	TCCGGA	1 cut(s)	224
BspFNI	CGCG	5 cut(s)	48, 80, 154, 506, 569
BspLI	GGNNCC	5 cut(s)	163, 164, 229, 536, 826
BspOI	GCTAGC	1 cut(s)	152
BspPI	GGATC	4 cut(s)	184, 222, 235, 235
BspQI	GCTCTTC	2 cut(s)	17, 143
BspTNI	GGTCTC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	271
BsrFI	RCCGGY	2 cut(s)	522, 552
BsrI	ACTGG	1 cut(s)	692
BssAI	RCCGGY	2 cut(s)	522, 552
BssECI	CCNNGG	5 cut(s)	46, 57, 78, 87, 339
BssMI	GATC	5 cut(s)	105, 189, 227, 240, 313
BssSI	CACGAG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	3 cut(s)	341, 429, 725
Bst4CI	ACNGT	2 cut(s)	304, 702
Bst6I	CTCTTC	2 cut(s)	17, 143
BstBAI	YACGTR	1 cut(s)	415
BstC8I	GCNNGC	3 cut(s)	119, 150, 811
BstDEI	CTNAG	1 cut(s)	286
BstDSI	CCRYGG	2 cut(s)	46, 78
BstF5I	GGATG	4 cut(s)	589, 652, 715, 787
BstFNI	CGCG	5 cut(s)	48, 80, 154, 506, 569
BstH2I	RGCGCY	2 cut(s)	30, 124
BstHHI	GCGC	4 cut(s)	29, 42, 123, 154
BstKTI	GATC	5 cut(s)	108, 192, 230, 243, 316
BstMAI	GTCTC	2 cut(s)	289, 317
BstMBI	GATC	5 cut(s)	105, 189, 227, 240, 313
BstMCI	CGRYCG	3 cut(s)	383, 489, 701
BstNI	CCWGG	3 cut(s)	341, 429, 725
BstSCI	CCNGG	7 cut(s)	339, 427, 488, 537, 608, 630, 723
BstSFI	CTRYAG	1 cut(s)	559
BstUI	CGCG	5 cut(s)	48, 80, 154, 506, 569
BstV1I	GCAGC	3 cut(s)	86, 793, 825
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	189, 227
BstYI	RGATCY	2 cut(s)	189, 227
BstZI	CGGCCG	2 cut(s)	380, 486
BsuRI	GGCC	7 cut(s)	62, 71, 83, 344, 382, 427, 488
BtgI	CCRYGG	2 cut(s)	46, 78
BtsCI	GGATG	4 cut(s)	589, 652, 715, 787
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	1 cut(s)	849
Cac8I	GCNNGC	3 cut(s)	119, 150, 811
CaiI	CAGNNNCTG	1 cut(s)	730
CfoI	GCGC	4 cut(s)	29, 42, 123, 154
Cfr10I	RCCGGY	2 cut(s)	522, 552
Cfr13I	GGNCC	3 cut(s)	162, 520, 529
Cfr42I	CCGCGG	2 cut(s)	49, 81
CseI	GACGC	3 cut(s)	334, 495, 575
Csp6I	GTAC	3 cut(s)	364, 466, 502
CspAI	ACCGGT	1 cut(s)	522
CviAII	CATG	2 cut(s)	403, 715
CviQI	GTAC	3 cut(s)	364, 466, 502
DdeI	CTNAG	1 cut(s)	286
DpnI	GATC	5 cut(s)	107, 191, 229, 242, 315
DpnII	GATC	5 cut(s)	105, 189, 227, 240, 313
EaeI	YGGCCR	3 cut(s)	60, 380, 486
EagI	CGGCCG	2 cut(s)	380, 486
Eam1104I	CTCTTC	2 cut(s)	17, 143
EarI	CTCTTC	2 cut(s)	17, 143
EciI	GGCGGA	1 cut(s)	837
EclXI	CGGCCG	2 cut(s)	380, 486
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	162, 520, 529
Eco52I	CGGCCG	2 cut(s)	380, 486
Eco57I	CTGAAG	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	3 cut(s)	339, 427, 723
EcoT38I	GRGCYC	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	2 cut(s)	406, 718
FaiI	YATR	4 cut(s)	377, 404, 716, 776
FaqI	GGGAC	3 cut(s)	175, 578, 635
FatI	CATG	2 cut(s)	402, 714
FauI	CCCGC	2 cut(s)	53, 276
FokI	GGATG	4 cut(s)	596, 659, 722, 794
FriOI	GRGCYC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	4 cut(s)	28, 41, 122, 153
GsaI	CCCAGC	1 cut(s)	734
HaeII	RGCGCY	2 cut(s)	30, 124
HaeIII	GGCC	7 cut(s)	62, 71, 83, 344, 382, 427, 488
HgaI	GACGC	3 cut(s)	334, 495, 575
HhaI	GCGC	4 cut(s)	29, 42, 123, 154
Hin1II	CATG	2 cut(s)	406, 718
Hin6I	GCGC	4 cut(s)	27, 40, 121, 152
HinP1I	GCGC	4 cut(s)	27, 40, 121, 152
HinfI	GANTC	2 cut(s)	221, 451
HphI	GGTGA	3 cut(s)	133, 607, 649
Hpy166II	GTNNAC	3 cut(s)	334, 436, 483
Hpy188I	TCNGA	2 cut(s)	232, 698
Hpy188III	TCNNGA	5 cut(s)	187, 196, 225, 311, 317
Hpy8I	GTNNAC	3 cut(s)	334, 436, 483
Hpy99I	CGWCG	2 cut(s)	395, 511
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	2 cut(s)	304, 702
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	1 cut(s)	458
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	2 cut(s)	406, 718
HspAI	GCGC	4 cut(s)	27, 40, 121, 152
KflI	GGGWCCC	1 cut(s)	162
Kpn2I	TCCGGA	1 cut(s)	224
KspI	CCGCGG	2 cut(s)	49, 81
Kzo9I	GATC	5 cut(s)	105, 189, 227, 240, 313
LguI	GCTCTTC	2 cut(s)	17, 143
LmnI	GCTCC	3 cut(s)	276, 727, 824
Lsp1109I	GCAGC	3 cut(s)	86, 793, 825
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	414
MalI	GATC	5 cut(s)	107, 191, 229, 242, 315
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	5 cut(s)	105, 189, 227, 240, 313
MboII	GAAGA	6 cut(s)	31, 34, 100, 130, 245, 250
MflI	RGATCY	2 cut(s)	189, 227
MhlI	GDGCHC	2 cut(s)	99, 219
MluCI	AATT	3 cut(s)	406, 658, 763
MluI	ACGCGT	2 cut(s)	504, 567
MmeI	TCCRAC	4 cut(s)	268, 426, 507, 721
MnlI	CCTC	8 cut(s)	67, 94, 97, 112, 137, 203, 612, 771
MroI	TCCGGA	1 cut(s)	224
MspA1I	CMGCKG	5 cut(s)	48, 80, 280, 290, 816
MspR9I	CCNGG	7 cut(s)	341, 429, 490, 539, 610, 632, 725
MvaI	CCWGG	3 cut(s)	341, 429, 725
MvnI	CGCG	5 cut(s)	48, 80, 154, 506, 569
NciI	CCSGG	4 cut(s)	490, 539, 610, 632
NdeII	GATC	5 cut(s)	105, 189, 227, 240, 313
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	406, 718
NlaIV	GGNNCC	5 cut(s)	163, 164, 229, 536, 826
NmeAIII	GCCGAG	3 cut(s)	38, 68, 370
PciSI	GCTCTTC	2 cut(s)	17, 143
PfeI	GAWTC	2 cut(s)	221, 451
PflMI	CCANNNNNTGG	1 cut(s)	730
PinAI	ACCGGT	1 cut(s)	522
Ppu21I	YACGTR	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	3 cut(s)	339, 427, 723
PspFI	CCCAGC	1 cut(s)	730
PspGI	CCWGG	3 cut(s)	339, 427, 723
PspN4I	GGNNCC	5 cut(s)	163, 164, 229, 536, 826
PspPI	GGNCC	3 cut(s)	162, 520, 529
PspPPI	RGGWCCY	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	730
PsuI	RGATCY	2 cut(s)	189, 227
RsaI	GTAC	3 cut(s)	365, 467, 503
RsaNI	GTAC	3 cut(s)	364, 466, 502
SacII	CCGCGG	2 cut(s)	49, 81
SapI	GCTCTTC	2 cut(s)	17, 143
Sau3AI	GATC	5 cut(s)	105, 189, 227, 240, 313
Sau96I	GGNCC	3 cut(s)	162, 520, 529
ScrFI	CCNGG	7 cut(s)	341, 429, 490, 539, 610, 632, 725
SduI	GDGCHC	2 cut(s)	99, 219
SetI	ASST	4 cut(s)	138, 150, 417, 732
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	1 cut(s)	559
SfiI	GGCCNNNNNGGCC	1 cut(s)	68
Sfr303I	CCGCGG	2 cut(s)	49, 81
SgrBI	CCGCGG	2 cut(s)	49, 81
SinI	GGWCC	3 cut(s)	162, 520, 529
SmlI	CTYRAG	2 cut(s)	194, 625
SmoI	CTYRAG	2 cut(s)	194, 625
Sse9I	AATT	3 cut(s)	406, 658, 763
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	7 cut(s)	339, 427, 488, 537, 608, 630, 723
TaaI	ACNGT	2 cut(s)	304, 702
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	4 cut(s)	104, 261, 318, 390
TasI	AATT	3 cut(s)	406, 658, 763
TfiI	GAWTC	2 cut(s)	221, 451
TscAI	CASTG	1 cut(s)	849
TseI	GCWGC	3 cut(s)	74, 806, 813
TspDTI	ATGAA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	849
Van91I	CCANNNNNTGG	1 cut(s)	730
VpaK11BI	GGWCC	3 cut(s)	162, 520, 529
XapI	RAATTY	2 cut(s)	406, 658
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.