Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006661

Physical Location & Seq

Genomic Coordinates Forward (+)

1025928 .. 1026320

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1007500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTACGAGGTGGTGGTGTTCACGGCAGGGTTGAGAGAGTACGCGTCGCTGGTGCTGGACCGGTTGGACCGGAAACGGGCGATTTCGCACCGGCTCTATCGGGACGCGTGTAAAGAAGTGGACGGGAAGTTCGTGAAGGACTTGTCCGGGCTGGGGAGGGACTTGAGCCGGGTGGTGATTGTGGACGACAATCCCAATTCGTACCTCTTTCAACCGGAGAATGCTGTTCCGGTCCGACCGTTTGTGGATGACATGGCGGACCGGGAGCTGGGCACGTTGGTGGAGTTCTTTGAAGGGTTGGATTGTGAGGACATGAGGGACGCTGTGAAGAAATTTGTTGGCTGCGGCGGCGGAGGCGACGGCGGTGGATCAAAAGACGGCGAAGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

131

Amino Acids

14.34

Weight (kDa)

4.72

Isoelectric Point (pI)

26.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	1 - 101	1.5e-36	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29770 AT1G29780 AT5G45700
fragaria_vesca	FvH4_3g07100 FvH4_3g07110 FvH4_3g36710
malus_domestica	MD00G1007300.v1.1 MD00G1007500.v1.1 MD10G1273900.v1.1 MD10G1274000.v1.1
prunus_persica	Prupe.4G068500_v2.0.a1 Prupe.4G068600_v2.0.a1
pyrus_communis	pycom05g27270 pycom10g22870
rosa_chinensis	RchiOBHm_Chr5g0012001 RchiOBHm_Chr5g0012011
rosa_laevigata	RLG00000031878
rosa_multiflora	Rmu_co8217880.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064580
rosa_rugosa	Rorug04G0460300 Rorug04G0460300
rosa_samantha	Rh5BG088100 Rh5BG088200 Rh5CG102000 Rh5DG088700
rosa_wichuraiana	Rw5G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	44, 107
AciI	CCGC	5 cut(s)	257, 345, 348, 351, 363
AclWI	GGATC	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	3 cut(s)	5, 41, 203
AfiI	CCNNNNNNNGG	3 cut(s)	76, 153, 268
AflIII	ACRYGT	2 cut(s)	42, 105
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	212, 293
AleI	CACNNNNGTG	1 cut(s)	278
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
AlwI	GGATC	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	332
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AsiGI	ACCGGT	1 cut(s)	60
AspS9I	GGNCC	4 cut(s)	58, 67, 232, 259
AsuC2I	CCSGG	3 cut(s)	148, 170, 263
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	4 cut(s)	58, 67, 232, 259
BaeGI	GKGCMC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	329
BceAI	ACGGC	2 cut(s)	39, 376
BcnI	CCSGG	3 cut(s)	148, 170, 263
BisI	GCNGC	3 cut(s)	343, 346, 349
BlsI	GCNGC	3 cut(s)	344, 347, 350
Bme1390I	CCNGG	3 cut(s)	148, 170, 263
Bme18I	GGWCC	4 cut(s)	58, 67, 232, 259
BmgT120I	GGNCC	4 cut(s)	58, 67, 232, 259
BmrFI	CCNGG	3 cut(s)	148, 170, 263
BpuEI	CTTGAG	1 cut(s)	184
BpuMI	CCSGG	3 cut(s)	148, 170, 263
BsaWI	WCCGGW	4 cut(s)	60, 69, 214, 229
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 153, 268
Bse118I	RCCGGY	2 cut(s)	60, 90
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	3 cut(s)	76, 153, 268
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	2 cut(s)	151, 268
Bsh1236I	CGCG	2 cut(s)	44, 107
Bsh1285I	CGRYCG	1 cut(s)	239
BshTI	ACCGGT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	239
BsiSI	CCGG	8 cut(s)	61, 70, 91, 147, 169, 215, 230, 262
BslFI	GGGAC	3 cut(s)	116, 173, 332
BslI	CCNNNNNNNGG	3 cut(s)	76, 153, 268
BsmFI	GGGAC	3 cut(s)	116, 173, 332
BsmI	GAATGC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	368
BspACI	CCGC	5 cut(s)	257, 345, 348, 351, 363
BspFNI	CGCG	2 cut(s)	44, 107
BspPI	GGATC	1 cut(s)	376
BsrFI	RCCGGY	2 cut(s)	60, 90
BssAI	RCCGGY	2 cut(s)	60, 90
BssMI	GATC	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	2 cut(s)	44, 107
BstKTI	GATC	1 cut(s)	371
BstMBI	GATC	1 cut(s)	368
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 354
BstSCI	CCNGG	3 cut(s)	146, 168, 261
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	2 cut(s)	44, 107
BstV1I	GCAGC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	393
Cfr10I	RCCGGY	2 cut(s)	60, 90
Cfr13I	GGNCC	4 cut(s)	58, 67, 232, 259
CpoI	CGGWCCG	2 cut(s)	232, 259
CseI	GACGC	3 cut(s)	33, 113, 329
Csp6I	GTAC	3 cut(s)	4, 40, 202
CspAI	ACCGGT	1 cut(s)	60
CspI	CGGWCCG	2 cut(s)	232, 259
CviAII	CATG	2 cut(s)	253, 313
CviJI	RGCY	5 cut(s)	94, 151, 168, 268, 342
CviKI_1	RGCY	5 cut(s)	94, 151, 168, 268, 342
CviQI	GTAC	3 cut(s)	4, 40, 202
DpnI	GATC	1 cut(s)	370
DpnII	GATC	1 cut(s)	368
EciI	GGCGGA	2 cut(s)	272, 366
Eco47I	GGWCC	4 cut(s)	58, 67, 232, 259
FaeI	CATG	2 cut(s)	256, 316
FaiI	YATR	2 cut(s)	254, 314
FaqI	GGGAC	3 cut(s)	116, 173, 332
FatI	CATG	2 cut(s)	252, 312
Fnu4HI	GCNGC	3 cut(s)	343, 346, 349
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	3 cut(s)	343, 346, 349
GluI	GCNGC	3 cut(s)	343, 346, 349
GsaI	CCCAGC	2 cut(s)	155, 272
HapII	CCGG	8 cut(s)	61, 70, 91, 147, 169, 215, 230, 262
HgaI	GACGC	3 cut(s)	33, 113, 329
Hin1II	CATG	2 cut(s)	256, 316
HpaII	CCGG	8 cut(s)	61, 70, 91, 147, 169, 215, 230, 262
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	3 cut(s)	21, 121, 184
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	2 cut(s)	101, 133
Hpy8I	GTNNAC	3 cut(s)	21, 121, 184
Hpy99I	CGWCG	2 cut(s)	49, 362
HpyAV	CCTTC	2 cut(s)	130, 287
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 354
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	256, 316
Kzo9I	GATC	1 cut(s)	368
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	1 cut(s)	329
MaeII	ACGT	1 cut(s)	275
MalI	GATC	1 cut(s)	370
MboI	GATC	1 cut(s)	368
MboII	GAAGA	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	2 cut(s)	196, 332
MluI	ACGCGT	2 cut(s)	42, 105
MmeI	TCCRAC	3 cut(s)	45, 259, 279
MnlI	CCTC	5 cut(s)	150, 215, 301, 309, 347
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	8 cut(s)	61, 70, 91, 147, 169, 215, 230, 262
MspR9I	CCNGG	3 cut(s)	148, 170, 263
Mva1269I	GAATGC	1 cut(s)	226
MvnI	CGCG	2 cut(s)	44, 107
MwoI	GCNNNNNNNGC	2 cut(s)	348, 354
NciI	CCSGG	3 cut(s)	148, 170, 263
NdeII	GATC	1 cut(s)	368
NlaIII	CATG	2 cut(s)	256, 316
OliI	CACNNNNGTG	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	226
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	344, 347, 350
PspFI	CCCAGC	2 cut(s)	151, 268
PspPI	GGNCC	4 cut(s)	58, 67, 232, 259
RsaI	GTAC	3 cut(s)	5, 41, 203
RsaNI	GTAC	3 cut(s)	4, 40, 202
RseI	CAYNNNNRTG	1 cut(s)	278
Rsr2I	CGGWCCG	2 cut(s)	232, 259
RsrII	CGGWCCG	2 cut(s)	232, 259
SatI	GCNGC	3 cut(s)	343, 346, 349
Sau3AI	GATC	1 cut(s)	368
Sau96I	GGNCC	4 cut(s)	58, 67, 232, 259
ScrFI	CCNGG	3 cut(s)	148, 170, 263
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	4 cut(s)	12, 207, 270, 278
SinI	GGWCC	4 cut(s)	58, 67, 232, 259
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	2 cut(s)	196, 332
SsiI	CCGC	5 cut(s)	257, 345, 348, 351, 363
StyD4I	CCNGG	3 cut(s)	146, 168, 261
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	1 cut(s)	278
TasI	AATT	2 cut(s)	196, 332
TauI	GCSGC	2 cut(s)	348, 351
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	1 cut(s)	342
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	4 cut(s)	58, 67, 232, 259
XapI	RAATTY	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.