Prupe.4G068600_v2.0.a1

Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
3326327 .. 3327343
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G068600.1

Sequence Viewer

Length: 1017 bp
ATGGTGTCCAGGATTCTCAAGAAAACCCCCAGCACCAACAAGCCCATGCCCATCAAGCTCTACCGCGGCATACGGCGCCTCCACCGCCGCAACTGCTCCTTGAAAAAGTCGGCGATTGCCCCATCCACCGTCGTGCTGACCCGCGTCGGCACCAACAAAGCATTCAAGGTCCTCCACAAACCCAAGTCCCCGGAGACCCGACCCGAAACCCAGGCCCGCCTCCCACTCCCGCCTCTAGCCTCGCCGGAGAAACGGACAGTGTGCCTGGACCTCGACGAGACCTTGGTCCACTCCGTGACGGGTCCGCCGCCCAAGAACTTCGATTTCGTTGTCCGGCCGAAGGTCCGCGGCAAGGTGACGACTTTCTACGTGGTGAAACGACCCGGCGTGGACGCGTTTTTGGAGAGGCTGGCGGCGCAGTACGAGGTGGTGGTGTTCACGGCGGGGCTGAGAGATTACGCGACGCTGGTACTGGACCTGCTGGACCGGAAGCGCCTGGTCTCGCACCGGCTCTACAGGGACTCGTGTAAGGAGATGAGCGGGAAGTTCGTGAAGGACTTGTCCAGGTTGGGGCGGGACTTGAGGCGGGTGGTGATTGTGGACGACAATCCCAATGCTTATTTCCTCCAGCCAGAGAACGCGATCCCCGTCCACCGGTTTTTTTACGACCCAGCGGACCGGGAGCTAGCGAGGTTGCTGGAGTTCTTTGAGGACGAAGAGTTACGTTGTTGTGAGGACATTAGGATTGCTGTGAAGAAGTTTGTTGGTGACGATGGATTGATGTCGTCTGATGACGACGGCGATGACGACGACGAATTGGAGGAGATGAGTGATGCTAAGTCTAAACCTACCGTTTCGACGCCGTGCTCTGTCATCAGTGTCCATAGAGTTCGCCCATTTGGGCCGCCAGTTTTGGAGTGGGGGACAAATATGGTGATCGTGTGCAGTTTCTTTCTGCTAATTATTAATGTAATCGTGTGCTTTCGCACAGGATTTCATCCTTTTTTTTTACATTGA

Protein Analysis

339

Amino Acids

38.54

Weight (kDa)

9.2

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 486
AccB1I GGYRCC 2 cut(s) 75, 149
AccBSI CCGCTC 1 cut(s) 540
AccII CGCG 6 cut(s) 66, 144, 348, 395, 461, 641
AclWI GGATC 1 cut(s) 637
AcoI YGGCCR 1 cut(s) 335
AcyI GRCGYC 2 cut(s) 76, 860
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 2 cut(s) 422, 471
AfiI CCNNNNNNNGG 4 cut(s) 340, 352, 570, 654
AflIII ACRYGT 1 cut(s) 393
AgeI ACCGGT 1 cut(s) 654
AgsI TTSAA 2 cut(s) 103, 166
AjnI CCWGG 5 cut(s) 8, 210, 264, 495, 563
AjuI GAANNNNNNNTTGG 4 cut(s) 146, 178, 605, 637
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 2 cut(s) 58, 685
AluI AGCT 2 cut(s) 58, 685
Alw21I GWGCWC 1 cut(s) 869
Alw26I GTCTC 3 cut(s) 188, 272, 505
AlwI GGATC 1 cut(s) 637
AoxI GGCC 3 cut(s) 213, 335, 902
AseI ATTAAT 1 cut(s) 966
AsiGI ACCGGT 1 cut(s) 654
AspLEI GCGC 3 cut(s) 78, 418, 495
AsuC2I CCSGG 3 cut(s) 191, 384, 680
AsuHPI GGTGA 5 cut(s) 367, 385, 604, 779, 946
AsuNHI GCTAGC 1 cut(s) 685
AvaII GGWCC 8 cut(s) 169, 268, 286, 302, 343, 475, 484, 676
BanI GGYRCC 2 cut(s) 75, 149
BauI CACGAG 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 869
BccI CCATC 3 cut(s) 59, 130, 767
BceAI ACGGC 4 cut(s) 89, 456, 814, 847
BciT130I CCWGG 5 cut(s) 10, 212, 266, 497, 565
BcnI CCSGG 3 cut(s) 191, 384, 680
BcoDI GTCTC 3 cut(s) 188, 272, 505
BfaI CTAG 2 cut(s) 236, 686
BfmI CTRYAG 1 cut(s) 514
BfoI RGCGCY 2 cut(s) 79, 496
BfuAI ACCTGC 1 cut(s) 486
BisI GCNGC 6 cut(s) 67, 88, 308, 349, 414, 905
BlsI GCNGC 6 cut(s) 68, 89, 309, 350, 415, 906
Bme1390I CCNGG 8 cut(s) 10, 191, 212, 266, 384, 497, 565, 680
Bme18I GGWCC 8 cut(s) 169, 268, 286, 302, 343, 475, 484, 676
BmiI GGNNCC 3 cut(s) 77, 151, 303
BmrFI CCNGG 8 cut(s) 10, 191, 212, 266, 384, 497, 565, 680
BmsI GCATC 1 cut(s) 823
BmtI GCTAGC 1 cut(s) 689
BoxI GACNNNNGTC 2 cut(s) 143, 284
BpmI CTGGAG 2 cut(s) 611, 719
BpuEI CTTGAG 1 cut(s) 601
BpuMI CCSGG 3 cut(s) 191, 384, 680
BsaAI YACGTR 1 cut(s) 370
BsaHI GRCGYC 2 cut(s) 76, 860
BsaI GGTCTC 3 cut(s) 188, 272, 505
BsaJI CCNNGG 5 cut(s) 64, 189, 210, 282, 346
BsaWI WCCGGW 2 cut(s) 486, 654
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 4 cut(s) 340, 352, 570, 654
Bse118I RCCGGY 2 cut(s) 507, 654
Bse1I ACTGG 2 cut(s) 477, 908
BseBI CCWGG 5 cut(s) 10, 212, 266, 497, 565
BseDI CCNNGG 5 cut(s) 64, 189, 210, 282, 346
BseGI GGATG 2 cut(s) 122, 997
BseLI CCNNNNNNNGG 4 cut(s) 340, 352, 570, 654
BseMII CTCAG 1 cut(s) 440
BseNI ACTGG 2 cut(s) 477, 908
BseRI GAGGAG 1 cut(s) 836
BseX3I CGGCCG 1 cut(s) 335
BseYI CCCAGC 2 cut(s) 29, 670
BsgI GTGCAG 1 cut(s) 964
Bsh1236I CGCG 6 cut(s) 66, 144, 348, 395, 461, 641
Bsh1285I CGRYCG 1 cut(s) 338
BshFI GGCC 3 cut(s) 215, 337, 904
BshNI GGYRCC 2 cut(s) 75, 149
BshTI ACCGGT 1 cut(s) 654
BsiEI CGRYCG 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 869
BsiSI CCGG 8 cut(s) 191, 245, 334, 384, 487, 508, 655, 679
BslFI GGGAC 4 cut(s) 172, 533, 590, 937
BslI CCNNNNNNNGG 4 cut(s) 340, 352, 570, 654
BsmAI GTCTC 3 cut(s) 188, 272, 505
BsmFI GGGAC 4 cut(s) 172, 533, 590, 937
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 3 cut(s) 215, 337, 904
Bso31I GGTCTC 3 cut(s) 188, 272, 505
Bsp1286I GDGCHC 1 cut(s) 869
Bsp143I GATC 2 cut(s) 642, 936
BspANI GGCC 3 cut(s) 215, 337, 904
BspCNI CTCAG 1 cut(s) 441
BspFNI CGCG 6 cut(s) 66, 144, 348, 395, 461, 641
BspLI GGNNCC 3 cut(s) 77, 151, 303
BspMI ACCTGC 1 cut(s) 486
BspOI GCTAGC 1 cut(s) 689
BspPI GGATC 1 cut(s) 637
BspT107I GGYRCC 2 cut(s) 75, 149
BspTNI GGTCTC 3 cut(s) 188, 272, 505
BsrBI CCGCTC 1 cut(s) 540
BsrFI RCCGGY 2 cut(s) 507, 654
BsrI ACTGG 2 cut(s) 477, 908
BssAI RCCGGY 2 cut(s) 507, 654
BssECI CCNNGG 5 cut(s) 64, 189, 210, 282, 346
BssMI GATC 2 cut(s) 642, 936
BssNI GRCGYC 2 cut(s) 76, 860
BssSI CACGAG 1 cut(s) 523
BssT1I CCWWGG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 523
Bst2UI CCWGG 5 cut(s) 10, 212, 266, 497, 565
Bst4CI ACNGT 3 cut(s) 130, 259, 853
Bst6I CTCTTC 1 cut(s) 711
BstACI GRCGYC 2 cut(s) 76, 860
BstBAI YACGTR 1 cut(s) 370
BstC8I GCNNGC 3 cut(s) 217, 411, 687
BstDEI CTNAG 2 cut(s) 449, 837
BstDSI CCRYGG 2 cut(s) 64, 346
BstF5I GGATG 2 cut(s) 122, 997
BstFNI CGCG 6 cut(s) 66, 144, 348, 395, 461, 641
BstH2I RGCGCY 2 cut(s) 79, 496
BstHHI GCGC 3 cut(s) 78, 418, 495
BstKTI GATC 2 cut(s) 645, 939
BstMAI GTCTC 3 cut(s) 188, 272, 505
BstMBI GATC 2 cut(s) 642, 936
BstMCI CGRYCG 1 cut(s) 338
BstMWI GCNNNNNNNGC 5 cut(s) 55, 75, 84, 93, 415
BstNI CCWGG 5 cut(s) 10, 212, 266, 497, 565
BstPAI GACNNNNGTC 2 cut(s) 143, 284
BstSCI CCNGG 8 cut(s) 8, 189, 210, 264, 382, 495, 563, 678
BstSFI CTRYAG 1 cut(s) 514
BstUI CGCG 6 cut(s) 66, 144, 348, 395, 461, 641
BstZI CGGCCG 1 cut(s) 335
BsuRI GGCC 3 cut(s) 215, 337, 904
BtgI CCRYGG 2 cut(s) 64, 346
BtgZI GCGATG 1 cut(s) 816
BtsCI GGATG 2 cut(s) 122, 997
BtsIMutI CAGTG 2 cut(s) 264, 883
BveI ACCTGC 1 cut(s) 486
Cac8I GCNNGC 3 cut(s) 217, 411, 687
CfoI GCGC 3 cut(s) 78, 418, 495
Cfr10I RCCGGY 2 cut(s) 507, 654
Cfr42I CCGCGG 2 cut(s) 67, 349
CpoI CGGWCCG 1 cut(s) 676
CseI GACGC 4 cut(s) 133, 401, 472, 868
Csp6I GTAC 2 cut(s) 421, 470
CspAI ACCGGT 1 cut(s) 654
CspI CGGWCCG 1 cut(s) 676
CviAII CATG 1 cut(s) 46
CviQI GTAC 2 cut(s) 421, 470
DdeI CTNAG 2 cut(s) 449, 837
DinI GGCGCC 1 cut(s) 77
DpnI GATC 2 cut(s) 644, 938
DpnII GATC 2 cut(s) 642, 936
DraIII CACNNNGTG 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 335
EagI CGGCCG 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
EciI GGCGGA 1 cut(s) 294
EclXI CGGCCG 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 282
Eco31I GGTCTC 3 cut(s) 188, 272, 505
Eco47I GGWCC 8 cut(s) 169, 268, 286, 302, 343, 475, 484, 676
Eco52I CGGCCG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 5 cut(s) 8, 210, 264, 495, 563
EcoT14I CCWWGG 1 cut(s) 282
EgeI GGCGCC 1 cut(s) 77
EheI GGCGCC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 47, 71, 885, 932
FaqI GGGAC 4 cut(s) 172, 533, 590, 937
FatI CATG 1 cut(s) 45
FauI CCCGC 7 cut(s) 149, 224, 237, 436, 533, 567, 579
Fnu4HI GCNGC 6 cut(s) 67, 88, 308, 349, 414, 905
FokI GGATG 2 cut(s) 109, 984
Fsp4HI GCNGC 6 cut(s) 67, 88, 308, 349, 414, 905
FspBI CTAG 2 cut(s) 236, 686
GlaI GCGC 3 cut(s) 77, 417, 494
GluI GCNGC 6 cut(s) 67, 88, 308, 349, 414, 905
GsaI CCCAGC 2 cut(s) 33, 674
GsuI CTGGAG 2 cut(s) 611, 719
HaeII RGCGCY 2 cut(s) 79, 496
HaeIII GGCC 3 cut(s) 215, 337, 904
HapII CCGG 8 cut(s) 191, 245, 334, 384, 487, 508, 655, 679
HgaI GACGC 4 cut(s) 133, 401, 472, 868
HhaI GCGC 3 cut(s) 78, 418, 495
Hin1I GRCGYC 2 cut(s) 76, 860
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 3 cut(s) 76, 416, 493
HinP1I GCGC 3 cut(s) 76, 416, 493
HinfI GANTC 2 cut(s) 13, 521
HpaII CCGG 8 cut(s) 191, 245, 334, 384, 487, 508, 655, 679
HphI GGTGA 5 cut(s) 367, 385, 604, 779, 946
Hpy166II GTNNAC 5 cut(s) 289, 391, 438, 601, 652
Hpy188I TCNGA 1 cut(s) 790
Hpy188III TCNNGA 2 cut(s) 19, 550
Hpy8I GTNNAC 5 cut(s) 289, 391, 438, 601, 652
Hpy99I CGWCG 8 cut(s) 134, 149, 278, 466, 800, 812, 815, 862
HpyAV CCTTC 2 cut(s) 334, 547
HpyCH4III ACNGT 3 cut(s) 130, 259, 853
HpyCH4IV ACGT 2 cut(s) 369, 724
HpyCH4V TGCA 1 cut(s) 945
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 75, 84, 93, 415
HpyF3I CTNAG 2 cut(s) 449, 837
HpySE526I ACGT 2 cut(s) 369, 724
Hsp92I GRCGYC 2 cut(s) 76, 860
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 3 cut(s) 76, 416, 493
KasI GGCGCC 1 cut(s) 75
KspI CCGCGG 2 cut(s) 67, 349
Kzo9I GATC 2 cut(s) 642, 936
LmnI GCTCC 2 cut(s) 101, 682
LweI GCATC 1 cut(s) 823
MaeI CTAG 2 cut(s) 236, 686
MaeII ACGT 2 cut(s) 369, 724
MaeIII GTNAC 4 cut(s) 295, 355, 720, 767
MalI GATC 2 cut(s) 644, 938
MbiI CCGCTC 1 cut(s) 540
MboI GATC 2 cut(s) 642, 936
MboII GAAGA 2 cut(s) 728, 766
MhlI GDGCHC 1 cut(s) 869
MluCI AATT 2 cut(s) 815, 960
MluI ACGCGT 1 cut(s) 393
Mly113I GGCGCC 1 cut(s) 76
MlyI GAGTC 1 cut(s) 515
MseI TTAA 1 cut(s) 966
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 3 cut(s) 66, 348, 674
MspI CCGG 8 cut(s) 191, 245, 334, 384, 487, 508, 655, 679
MspR9I CCNGG 8 cut(s) 10, 191, 212, 266, 384, 497, 565, 680
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 5 cut(s) 10, 212, 266, 497, 565
MvnI CGCG 6 cut(s) 66, 144, 348, 395, 461, 641
MwoI GCNNNNNNNGC 5 cut(s) 55, 75, 84, 93, 415
NarI GGCGCC 1 cut(s) 76
NciI CCSGG 3 cut(s) 191, 384, 680
NdeII GATC 2 cut(s) 642, 936
NheI GCTAGC 1 cut(s) 685
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 3 cut(s) 77, 151, 303
NmuCI GTSAC 3 cut(s) 295, 355, 767
OliI CACNNNNGTG 1 cut(s) 131
PcsI WCGNNNNNNNCGW 2 cut(s) 645, 804
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 13
PfoI TCCNGGA 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 654
PkrI GCNGC 6 cut(s) 68, 89, 309, 350, 415, 906
PleI GAGTC 1 cut(s) 515
PluTI GGCGCC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 515
Ppu21I YACGTR 1 cut(s) 370
PpuMI RGGWCCY 1 cut(s) 169
PshAI GACNNNNGTC 2 cut(s) 143, 284
PshBI ATTAAT 1 cut(s) 966
Psp5II RGGWCCY 1 cut(s) 169
Psp6I CCWGG 5 cut(s) 8, 210, 264, 495, 563
PspFI CCCAGC 2 cut(s) 29, 670
PspGI CCWGG 5 cut(s) 8, 210, 264, 495, 563
PspN4I GGNNCC 3 cut(s) 77, 151, 303
PspPPI RGGWCCY 1 cut(s) 169
RsaI GTAC 2 cut(s) 422, 471
RsaNI GTAC 2 cut(s) 421, 470
RseI CAYNNNNRTG 1 cut(s) 131
Rsr2I CGGWCCG 1 cut(s) 676
RsrII CGGWCCG 1 cut(s) 676
SacII CCGCGG 2 cut(s) 67, 349
SaqAI TTAA 1 cut(s) 966
SatI GCNGC 6 cut(s) 67, 88, 308, 349, 414, 905
Sau3AI GATC 2 cut(s) 642, 936
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 8 cut(s) 10, 191, 212, 266, 384, 497, 565, 680
SduI GDGCHC 1 cut(s) 869
SfaNI GCATC 1 cut(s) 823
SfcI CTRYAG 1 cut(s) 514
SfoI GGCGCC 1 cut(s) 77
Sfr303I CCGCGG 2 cut(s) 67, 349
SgrBI CCGCGG 2 cut(s) 67, 349
SinI GGWCC 8 cut(s) 169, 268, 286, 302, 343, 475, 484, 676
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 17, 580
SmoI CTYRAG 2 cut(s) 17, 580
Sse9I AATT 2 cut(s) 815, 960
SspDI GGCGCC 1 cut(s) 75
SspMI CTAG 2 cut(s) 236, 686
StyD4I CCNGG 8 cut(s) 8, 189, 210, 264, 382, 495, 563, 678
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 3 cut(s) 130, 259, 853
TaiI ACGT 2 cut(s) 372, 727
TaqI TCGA 3 cut(s) 273, 321, 857
TasI AATT 2 cut(s) 815, 960
TauI GCSGC 6 cut(s) 69, 90, 310, 351, 416, 907
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 966
Tru9I TTAA 1 cut(s) 966
TscAI CASTG 2 cut(s) 264, 883
TseFI GTSAC 3 cut(s) 295, 355, 767
Tsp45I GTSAC 3 cut(s) 295, 355, 767
TspDTI ATGAA 1 cut(s) 986
TspGWI ACGGA 2 cut(s) 268, 283
TspRI CASTG 2 cut(s) 264, 883
VpaK11BI GGWCC 8 cut(s) 169, 268, 286, 302, 343, 475, 484, 676
VspI ATTAAT 1 cut(s) 966
XcmI CCANNNNNNNNNTGG 1 cut(s) 915
XspI CTAG 2 cut(s) 236, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.