Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G29770 AT1G29780 AT5G45700 |
| fragaria_vesca | FvH4_3g07100 FvH4_3g07110 FvH4_3g36710 |
| malus_domestica | MD00G1007300.v1.1 MD00G1007500.v1.1 MD10G1273900.v1.1 MD10G1274000.v1.1 |
| prunus_persica | Prupe.4G068500_v2.0.a1 Prupe.4G068600_v2.0.a1 |
| pyrus_communis | pycom05g27270 pycom10g22870 |
| rosa_chinensis | RchiOBHm_Chr5g0012001 RchiOBHm_Chr5g0012011 |
| rosa_laevigata | RLG00000031878 |
| rosa_multiflora | Rmu_co8217880.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00064580 |
| rosa_rugosa | Rorug04G0460300 Rorug04G0460300 |
| rosa_samantha | Rh5BG088100 Rh5BG088200 Rh5CG102000 Rh5DG088700 |
| rosa_wichuraiana | Rw5G008060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 486 |
| AccB1I | GGYRCC | 2 cut(s) | 75, 149 |
| AccBSI | CCGCTC | 1 cut(s) | 540 |
| AccII | CGCG | 6 cut(s) | 66, 144, 348, 395, 461, 641 |
| AclWI | GGATC | 1 cut(s) | 637 |
| AcoI | YGGCCR | 1 cut(s) | 335 |
| AcyI | GRCGYC | 2 cut(s) | 76, 860 |
| AdeI | CACNNNGTG | 1 cut(s) | 295 |
| AfaI | GTAC | 2 cut(s) | 422, 471 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 340, 352, 570, 654 |
| AflIII | ACRYGT | 1 cut(s) | 393 |
| AgeI | ACCGGT | 1 cut(s) | 654 |
| AgsI | TTSAA | 2 cut(s) | 103, 166 |
| AjnI | CCWGG | 5 cut(s) | 8, 210, 264, 495, 563 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 146, 178, 605, 637 |
| AleI | CACNNNNGTG | 1 cut(s) | 131 |
| AluBI | AGCT | 2 cut(s) | 58, 685 |
| AluI | AGCT | 2 cut(s) | 58, 685 |
| Alw21I | GWGCWC | 1 cut(s) | 869 |
| Alw26I | GTCTC | 3 cut(s) | 188, 272, 505 |
| AlwI | GGATC | 1 cut(s) | 637 |
| AoxI | GGCC | 3 cut(s) | 213, 335, 902 |
| AseI | ATTAAT | 1 cut(s) | 966 |
| AsiGI | ACCGGT | 1 cut(s) | 654 |
| AspLEI | GCGC | 3 cut(s) | 78, 418, 495 |
| AsuC2I | CCSGG | 3 cut(s) | 191, 384, 680 |
| AsuHPI | GGTGA | 5 cut(s) | 367, 385, 604, 779, 946 |
| AsuNHI | GCTAGC | 1 cut(s) | 685 |
| AvaII | GGWCC | 8 cut(s) | 169, 268, 286, 302, 343, 475, 484, 676 |
| BanI | GGYRCC | 2 cut(s) | 75, 149 |
| BauI | CACGAG | 1 cut(s) | 523 |
| Bbv12I | GWGCWC | 1 cut(s) | 869 |
| BccI | CCATC | 3 cut(s) | 59, 130, 767 |
| BceAI | ACGGC | 4 cut(s) | 89, 456, 814, 847 |
| BciT130I | CCWGG | 5 cut(s) | 10, 212, 266, 497, 565 |
| BcnI | CCSGG | 3 cut(s) | 191, 384, 680 |
| BcoDI | GTCTC | 3 cut(s) | 188, 272, 505 |
| BfaI | CTAG | 2 cut(s) | 236, 686 |
| BfmI | CTRYAG | 1 cut(s) | 514 |
| BfoI | RGCGCY | 2 cut(s) | 79, 496 |
| BfuAI | ACCTGC | 1 cut(s) | 486 |
| BisI | GCNGC | 6 cut(s) | 67, 88, 308, 349, 414, 905 |
| BlsI | GCNGC | 6 cut(s) | 68, 89, 309, 350, 415, 906 |
| Bme1390I | CCNGG | 8 cut(s) | 10, 191, 212, 266, 384, 497, 565, 680 |
| Bme18I | GGWCC | 8 cut(s) | 169, 268, 286, 302, 343, 475, 484, 676 |
| BmiI | GGNNCC | 3 cut(s) | 77, 151, 303 |
| BmrFI | CCNGG | 8 cut(s) | 10, 191, 212, 266, 384, 497, 565, 680 |
| BmsI | GCATC | 1 cut(s) | 823 |
| BmtI | GCTAGC | 1 cut(s) | 689 |
| BoxI | GACNNNNGTC | 2 cut(s) | 143, 284 |
| BpmI | CTGGAG | 2 cut(s) | 611, 719 |
| BpuEI | CTTGAG | 1 cut(s) | 601 |
| BpuMI | CCSGG | 3 cut(s) | 191, 384, 680 |
| BsaAI | YACGTR | 1 cut(s) | 370 |
| BsaHI | GRCGYC | 2 cut(s) | 76, 860 |
| BsaI | GGTCTC | 3 cut(s) | 188, 272, 505 |
| BsaJI | CCNNGG | 5 cut(s) | 64, 189, 210, 282, 346 |
| BsaWI | WCCGGW | 2 cut(s) | 486, 654 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 63, 93 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 340, 352, 570, 654 |
| Bse118I | RCCGGY | 2 cut(s) | 507, 654 |
| Bse1I | ACTGG | 2 cut(s) | 477, 908 |
| BseBI | CCWGG | 5 cut(s) | 10, 212, 266, 497, 565 |
| BseDI | CCNNGG | 5 cut(s) | 64, 189, 210, 282, 346 |
| BseGI | GGATG | 2 cut(s) | 122, 997 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 340, 352, 570, 654 |
| BseMII | CTCAG | 1 cut(s) | 440 |
| BseNI | ACTGG | 2 cut(s) | 477, 908 |
| BseRI | GAGGAG | 1 cut(s) | 836 |
| BseX3I | CGGCCG | 1 cut(s) | 335 |
| BseYI | CCCAGC | 2 cut(s) | 29, 670 |
| BsgI | GTGCAG | 1 cut(s) | 964 |
| Bsh1236I | CGCG | 6 cut(s) | 66, 144, 348, 395, 461, 641 |
| Bsh1285I | CGRYCG | 1 cut(s) | 338 |
| BshFI | GGCC | 3 cut(s) | 215, 337, 904 |
| BshNI | GGYRCC | 2 cut(s) | 75, 149 |
| BshTI | ACCGGT | 1 cut(s) | 654 |
| BsiEI | CGRYCG | 1 cut(s) | 338 |
| BsiHKAI | GWGCWC | 1 cut(s) | 869 |
| BsiSI | CCGG | 8 cut(s) | 191, 245, 334, 384, 487, 508, 655, 679 |
| BslFI | GGGAC | 4 cut(s) | 172, 533, 590, 937 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 340, 352, 570, 654 |
| BsmAI | GTCTC | 3 cut(s) | 188, 272, 505 |
| BsmFI | GGGAC | 4 cut(s) | 172, 533, 590, 937 |
| BsmI | GAATGC | 1 cut(s) | 161 |
| BsnI | GGCC | 3 cut(s) | 215, 337, 904 |
| Bso31I | GGTCTC | 3 cut(s) | 188, 272, 505 |
| Bsp1286I | GDGCHC | 1 cut(s) | 869 |
| Bsp143I | GATC | 2 cut(s) | 642, 936 |
| BspANI | GGCC | 3 cut(s) | 215, 337, 904 |
| BspCNI | CTCAG | 1 cut(s) | 441 |
| BspFNI | CGCG | 6 cut(s) | 66, 144, 348, 395, 461, 641 |
| BspLI | GGNNCC | 3 cut(s) | 77, 151, 303 |
| BspMI | ACCTGC | 1 cut(s) | 486 |
| BspOI | GCTAGC | 1 cut(s) | 689 |
| BspPI | GGATC | 1 cut(s) | 637 |
| BspT107I | GGYRCC | 2 cut(s) | 75, 149 |
| BspTNI | GGTCTC | 3 cut(s) | 188, 272, 505 |
| BsrBI | CCGCTC | 1 cut(s) | 540 |
| BsrFI | RCCGGY | 2 cut(s) | 507, 654 |
| BsrI | ACTGG | 2 cut(s) | 477, 908 |
| BssAI | RCCGGY | 2 cut(s) | 507, 654 |
| BssECI | CCNNGG | 5 cut(s) | 64, 189, 210, 282, 346 |
| BssMI | GATC | 2 cut(s) | 642, 936 |
| BssNI | GRCGYC | 2 cut(s) | 76, 860 |
| BssSI | CACGAG | 1 cut(s) | 523 |
| BssT1I | CCWWGG | 1 cut(s) | 282 |
| Bst2BI | CACGAG | 1 cut(s) | 523 |
| Bst2UI | CCWGG | 5 cut(s) | 10, 212, 266, 497, 565 |
| Bst4CI | ACNGT | 3 cut(s) | 130, 259, 853 |
| Bst6I | CTCTTC | 1 cut(s) | 711 |
| BstACI | GRCGYC | 2 cut(s) | 76, 860 |
| BstBAI | YACGTR | 1 cut(s) | 370 |
| BstC8I | GCNNGC | 3 cut(s) | 217, 411, 687 |
| BstDEI | CTNAG | 2 cut(s) | 449, 837 |
| BstDSI | CCRYGG | 2 cut(s) | 64, 346 |
| BstF5I | GGATG | 2 cut(s) | 122, 997 |
| BstFNI | CGCG | 6 cut(s) | 66, 144, 348, 395, 461, 641 |
| BstH2I | RGCGCY | 2 cut(s) | 79, 496 |
| BstHHI | GCGC | 3 cut(s) | 78, 418, 495 |
| BstKTI | GATC | 2 cut(s) | 645, 939 |
| BstMAI | GTCTC | 3 cut(s) | 188, 272, 505 |
| BstMBI | GATC | 2 cut(s) | 642, 936 |
| BstMCI | CGRYCG | 1 cut(s) | 338 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 55, 75, 84, 93, 415 |
| BstNI | CCWGG | 5 cut(s) | 10, 212, 266, 497, 565 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 143, 284 |
| BstSCI | CCNGG | 8 cut(s) | 8, 189, 210, 264, 382, 495, 563, 678 |
| BstSFI | CTRYAG | 1 cut(s) | 514 |
| BstUI | CGCG | 6 cut(s) | 66, 144, 348, 395, 461, 641 |
| BstZI | CGGCCG | 1 cut(s) | 335 |
| BsuRI | GGCC | 3 cut(s) | 215, 337, 904 |
| BtgI | CCRYGG | 2 cut(s) | 64, 346 |
| BtgZI | GCGATG | 1 cut(s) | 816 |
| BtsCI | GGATG | 2 cut(s) | 122, 997 |
| BtsIMutI | CAGTG | 2 cut(s) | 264, 883 |
| BveI | ACCTGC | 1 cut(s) | 486 |
| Cac8I | GCNNGC | 3 cut(s) | 217, 411, 687 |
| CfoI | GCGC | 3 cut(s) | 78, 418, 495 |
| Cfr10I | RCCGGY | 2 cut(s) | 507, 654 |
| Cfr42I | CCGCGG | 2 cut(s) | 67, 349 |
| CpoI | CGGWCCG | 1 cut(s) | 676 |
| CseI | GACGC | 4 cut(s) | 133, 401, 472, 868 |
| Csp6I | GTAC | 2 cut(s) | 421, 470 |
| CspAI | ACCGGT | 1 cut(s) | 654 |
| CspI | CGGWCCG | 1 cut(s) | 676 |
| CviAII | CATG | 1 cut(s) | 46 |
| CviQI | GTAC | 2 cut(s) | 421, 470 |
| DdeI | CTNAG | 2 cut(s) | 449, 837 |
| DinI | GGCGCC | 1 cut(s) | 77 |
| DpnI | GATC | 2 cut(s) | 644, 938 |
| DpnII | GATC | 2 cut(s) | 642, 936 |
| DraIII | CACNNNGTG | 1 cut(s) | 295 |
| EaeI | YGGCCR | 1 cut(s) | 335 |
| EagI | CGGCCG | 1 cut(s) | 335 |
| Eam1104I | CTCTTC | 1 cut(s) | 711 |
| EarI | CTCTTC | 1 cut(s) | 711 |
| EciI | GGCGGA | 1 cut(s) | 294 |
| EclXI | CGGCCG | 1 cut(s) | 335 |
| Eco130I | CCWWGG | 1 cut(s) | 282 |
| Eco31I | GGTCTC | 3 cut(s) | 188, 272, 505 |
| Eco47I | GGWCC | 8 cut(s) | 169, 268, 286, 302, 343, 475, 484, 676 |
| Eco52I | CGGCCG | 1 cut(s) | 335 |
| EcoO109I | RGGNCCY | 1 cut(s) | 169 |
| EcoRII | CCWGG | 5 cut(s) | 8, 210, 264, 495, 563 |
| EcoT14I | CCWWGG | 1 cut(s) | 282 |
| EgeI | GGCGCC | 1 cut(s) | 77 |
| EheI | GGCGCC | 1 cut(s) | 77 |
| ErhI | CCWWGG | 1 cut(s) | 282 |
| FaeI | CATG | 1 cut(s) | 49 |
| FaiI | YATR | 4 cut(s) | 47, 71, 885, 932 |
| FaqI | GGGAC | 4 cut(s) | 172, 533, 590, 937 |
| FatI | CATG | 1 cut(s) | 45 |
| FauI | CCCGC | 7 cut(s) | 149, 224, 237, 436, 533, 567, 579 |
| Fnu4HI | GCNGC | 6 cut(s) | 67, 88, 308, 349, 414, 905 |
| FokI | GGATG | 2 cut(s) | 109, 984 |
| Fsp4HI | GCNGC | 6 cut(s) | 67, 88, 308, 349, 414, 905 |
| FspBI | CTAG | 2 cut(s) | 236, 686 |
| GlaI | GCGC | 3 cut(s) | 77, 417, 494 |
| GluI | GCNGC | 6 cut(s) | 67, 88, 308, 349, 414, 905 |
| GsaI | CCCAGC | 2 cut(s) | 33, 674 |
| GsuI | CTGGAG | 2 cut(s) | 611, 719 |
| HaeII | RGCGCY | 2 cut(s) | 79, 496 |
| HaeIII | GGCC | 3 cut(s) | 215, 337, 904 |
| HapII | CCGG | 8 cut(s) | 191, 245, 334, 384, 487, 508, 655, 679 |
| HgaI | GACGC | 4 cut(s) | 133, 401, 472, 868 |
| HhaI | GCGC | 3 cut(s) | 78, 418, 495 |
| Hin1I | GRCGYC | 2 cut(s) | 76, 860 |
| Hin1II | CATG | 1 cut(s) | 49 |
| Hin6I | GCGC | 3 cut(s) | 76, 416, 493 |
| HinP1I | GCGC | 3 cut(s) | 76, 416, 493 |
| HinfI | GANTC | 2 cut(s) | 13, 521 |
| HpaII | CCGG | 8 cut(s) | 191, 245, 334, 384, 487, 508, 655, 679 |
| HphI | GGTGA | 5 cut(s) | 367, 385, 604, 779, 946 |
| Hpy166II | GTNNAC | 5 cut(s) | 289, 391, 438, 601, 652 |
| Hpy188I | TCNGA | 1 cut(s) | 790 |
| Hpy188III | TCNNGA | 2 cut(s) | 19, 550 |
| Hpy8I | GTNNAC | 5 cut(s) | 289, 391, 438, 601, 652 |
| Hpy99I | CGWCG | 8 cut(s) | 134, 149, 278, 466, 800, 812, 815, 862 |
| HpyAV | CCTTC | 2 cut(s) | 334, 547 |
| HpyCH4III | ACNGT | 3 cut(s) | 130, 259, 853 |
| HpyCH4IV | ACGT | 2 cut(s) | 369, 724 |
| HpyCH4V | TGCA | 1 cut(s) | 945 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 55, 75, 84, 93, 415 |
| HpyF3I | CTNAG | 2 cut(s) | 449, 837 |
| HpySE526I | ACGT | 2 cut(s) | 369, 724 |
| Hsp92I | GRCGYC | 2 cut(s) | 76, 860 |
| Hsp92II | CATG | 1 cut(s) | 49 |
| HspAI | GCGC | 3 cut(s) | 76, 416, 493 |
| KasI | GGCGCC | 1 cut(s) | 75 |
| KspI | CCGCGG | 2 cut(s) | 67, 349 |
| Kzo9I | GATC | 2 cut(s) | 642, 936 |
| LmnI | GCTCC | 2 cut(s) | 101, 682 |
| LweI | GCATC | 1 cut(s) | 823 |
| MaeI | CTAG | 2 cut(s) | 236, 686 |
| MaeII | ACGT | 2 cut(s) | 369, 724 |
| MaeIII | GTNAC | 4 cut(s) | 295, 355, 720, 767 |
| MalI | GATC | 2 cut(s) | 644, 938 |
| MbiI | CCGCTC | 1 cut(s) | 540 |
| MboI | GATC | 2 cut(s) | 642, 936 |
| MboII | GAAGA | 2 cut(s) | 728, 766 |
| MhlI | GDGCHC | 1 cut(s) | 869 |
| MluCI | AATT | 2 cut(s) | 815, 960 |
| MluI | ACGCGT | 1 cut(s) | 393 |
| Mly113I | GGCGCC | 1 cut(s) | 76 |
| MlyI | GAGTC | 1 cut(s) | 515 |
| MseI | TTAA | 1 cut(s) | 966 |
| MslI | CAYNNNNRTG | 1 cut(s) | 131 |
| MspA1I | CMGCKG | 3 cut(s) | 66, 348, 674 |
| MspI | CCGG | 8 cut(s) | 191, 245, 334, 384, 487, 508, 655, 679 |
| MspR9I | CCNGG | 8 cut(s) | 10, 191, 212, 266, 384, 497, 565, 680 |
| Mva1269I | GAATGC | 1 cut(s) | 161 |
| MvaI | CCWGG | 5 cut(s) | 10, 212, 266, 497, 565 |
| MvnI | CGCG | 6 cut(s) | 66, 144, 348, 395, 461, 641 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 55, 75, 84, 93, 415 |
| NarI | GGCGCC | 1 cut(s) | 76 |
| NciI | CCSGG | 3 cut(s) | 191, 384, 680 |
| NdeII | GATC | 2 cut(s) | 642, 936 |
| NheI | GCTAGC | 1 cut(s) | 685 |
| NlaIII | CATG | 1 cut(s) | 49 |
| NlaIV | GGNNCC | 3 cut(s) | 77, 151, 303 |
| NmuCI | GTSAC | 3 cut(s) | 295, 355, 767 |
| OliI | CACNNNNGTG | 1 cut(s) | 131 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 645, 804 |
| PctI | GAATGC | 1 cut(s) | 161 |
| PfeI | GAWTC | 1 cut(s) | 13 |
| PfoI | TCCNGGA | 1 cut(s) | 8 |
| PinAI | ACCGGT | 1 cut(s) | 654 |
| PkrI | GCNGC | 6 cut(s) | 68, 89, 309, 350, 415, 906 |
| PleI | GAGTC | 1 cut(s) | 515 |
| PluTI | GGCGCC | 1 cut(s) | 79 |
| PpsI | GAGTC | 1 cut(s) | 515 |
| Ppu21I | YACGTR | 1 cut(s) | 370 |
| PpuMI | RGGWCCY | 1 cut(s) | 169 |
| PshAI | GACNNNNGTC | 2 cut(s) | 143, 284 |
| PshBI | ATTAAT | 1 cut(s) | 966 |
| Psp5II | RGGWCCY | 1 cut(s) | 169 |
| Psp6I | CCWGG | 5 cut(s) | 8, 210, 264, 495, 563 |
| PspFI | CCCAGC | 2 cut(s) | 29, 670 |
| PspGI | CCWGG | 5 cut(s) | 8, 210, 264, 495, 563 |
| PspN4I | GGNNCC | 3 cut(s) | 77, 151, 303 |
| PspPPI | RGGWCCY | 1 cut(s) | 169 |
| RsaI | GTAC | 2 cut(s) | 422, 471 |
| RsaNI | GTAC | 2 cut(s) | 421, 470 |
| RseI | CAYNNNNRTG | 1 cut(s) | 131 |
| Rsr2I | CGGWCCG | 1 cut(s) | 676 |
| RsrII | CGGWCCG | 1 cut(s) | 676 |
| SacII | CCGCGG | 2 cut(s) | 67, 349 |
| SaqAI | TTAA | 1 cut(s) | 966 |
| SatI | GCNGC | 6 cut(s) | 67, 88, 308, 349, 414, 905 |
| Sau3AI | GATC | 2 cut(s) | 642, 936 |
| SchI | GAGTC | 1 cut(s) | 515 |
| ScrFI | CCNGG | 8 cut(s) | 10, 191, 212, 266, 384, 497, 565, 680 |
| SduI | GDGCHC | 1 cut(s) | 869 |
| SfaNI | GCATC | 1 cut(s) | 823 |
| SfcI | CTRYAG | 1 cut(s) | 514 |
| SfoI | GGCGCC | 1 cut(s) | 77 |
| Sfr303I | CCGCGG | 2 cut(s) | 67, 349 |
| SgrBI | CCGCGG | 2 cut(s) | 67, 349 |
| SinI | GGWCC | 8 cut(s) | 169, 268, 286, 302, 343, 475, 484, 676 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 131 |
| SmlI | CTYRAG | 2 cut(s) | 17, 580 |
| SmoI | CTYRAG | 2 cut(s) | 17, 580 |
| Sse9I | AATT | 2 cut(s) | 815, 960 |
| SspDI | GGCGCC | 1 cut(s) | 75 |
| SspMI | CTAG | 2 cut(s) | 236, 686 |
| StyD4I | CCNGG | 8 cut(s) | 8, 189, 210, 264, 382, 495, 563, 678 |
| StyI | CCWWGG | 1 cut(s) | 282 |
| TaaI | ACNGT | 3 cut(s) | 130, 259, 853 |
| TaiI | ACGT | 2 cut(s) | 372, 727 |
| TaqI | TCGA | 3 cut(s) | 273, 321, 857 |
| TasI | AATT | 2 cut(s) | 815, 960 |
| TauI | GCSGC | 6 cut(s) | 69, 90, 310, 351, 416, 907 |
| TfiI | GAWTC | 1 cut(s) | 13 |
| Tru1I | TTAA | 1 cut(s) | 966 |
| Tru9I | TTAA | 1 cut(s) | 966 |
| TscAI | CASTG | 2 cut(s) | 264, 883 |
| TseFI | GTSAC | 3 cut(s) | 295, 355, 767 |
| Tsp45I | GTSAC | 3 cut(s) | 295, 355, 767 |
| TspDTI | ATGAA | 1 cut(s) | 986 |
| TspGWI | ACGGA | 2 cut(s) | 268, 283 |
| TspRI | CASTG | 2 cut(s) | 264, 883 |
| VpaK11BI | GGWCC | 8 cut(s) | 169, 268, 286, 302, 343, 475, 484, 676 |
| VspI | ATTAAT | 1 cut(s) | 966 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 915 |
| XspI | CTAG | 2 cut(s) | 236, 686 |