Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006661

Physical Location & Seq

Genomic Coordinates Reverse (-)

7993421 .. 7995070

Gene Structure 1650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGTGGCCAAGTTCATGAAGAAAAGCCCAAGCAAGTCCATCGCCACCAAGCGCCGTCACCACCGCCGGTCCGCCGCGAAGAAAGCTGCGACCGCCGCCTCAACCGCCGTCCTCTCCTCGCTGATCACTTGCCAGCGCCGCCTCATCAAGCTCTTCAACAAACTAGCGCGTGTCGGCACGCCCAACCGCCACAAAGGCTTCAAGATCCTCAAGAAGACAACCGCCCAAACCCCCGACCCGACTCGACCCGAAGAAGCCCCGGTTTGCCGCGCCCTCTTCTTCGCCGGAGGCCCGCTCCCGCCGCAGATTTTGCCGGAGAAGAGGACGATCGTCCTCGATCTCGACGAGACCATGGTCCACTCGCAGGCCGGATCGCCGCCGGAGAAGTACGACTTCGTCGTCCGGCCGAGGATCGACGGCATGGTGTTGGATTTCTACGTTCTGAAGCGGCCCGGAGTGGACGAGTTGCTGGAGAAGCTCGGCGAGAAGTATGAGGTGGTGGTGTTCACGGCGGGGCTGAGGGAGTACGCTTCTTTGGTGCTGGACCGGTTGGACCGGAAGCGCGTGATATCCCATCGCCTGTACCGCGACTCGTGCAAGGAGGTGGATGGGAAGTTCGTGAAGGACTTGTCCGGCTTGGGAAGGGACTTGAGGCGCGTGGTGATCGTGGACGACAATCCGAACTCCTACGCGCTTCAACCGGAGAATGGGGTACCGGTCCGGCCGTTTTTGGATGACATGGCGGACCGGGAACTGGGGAAGTTGGTGGAGTTTTTTGAAGGGGAGCAGTGTGGTTGCTGTGAGGATATGAGGGATGCTGTGAAGAACTATGTTGCTGCTGCTGGGGAATGTGTTGCGAAAAATGACGAAGAATTCGCAACTTTGCAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

297

Amino Acids

33.33

Weight (kDa)

9.22

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	109 - 270	3.5e-53	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29770 AT1G29780 AT5G45700
fragaria_vesca	FvH4_3g07100 FvH4_3g07110 FvH4_3g36710
malus_domestica	MD00G1007300.v1.1 MD00G1007500.v1.1 MD10G1273900.v1.1 MD10G1274000.v1.1
prunus_persica	Prupe.4G068500_v2.0.a1 Prupe.4G068600_v2.0.a1
pyrus_communis	pycom05g27270 pycom10g22870
rosa_chinensis	RchiOBHm_Chr5g0012001 RchiOBHm_Chr5g0012011
rosa_laevigata	RLG00000031878
rosa_multiflora	Rmu_co8217880.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064580
rosa_rugosa	Rorug04G0460300 Rorug04G0460300
rosa_samantha	Rh5BG088100 Rh5BG088200 Rh5CG102000 Rh5DG088700
rosa_wichuraiana	Rw5G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
Acc65I	GGTACC	1 cut(s)	712
AccB1I	GGYRCC	1 cut(s)	712
AccBSI	CCGCTC	1 cut(s)	295
AccII	CGCG	7 cut(s)	77, 169, 270, 564, 588, 657, 692
AclWI	GGATC	3 cut(s)	199, 379, 419
AcoI	YGGCCR	3 cut(s)	6, 404, 722
AcsI	RAATTY	1 cut(s)	872
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	4 cut(s)	389, 527, 584, 714
AfiI	CCNNNNNNNGG	3 cut(s)	364, 707, 754
AgeI	ACCGGT	2 cut(s)	546, 715
AgsI	TTSAA	4 cut(s)	157, 202, 698, 779
AloI	GAACNNNNNNTCC	2 cut(s)	599, 631
AluBI	AGCT	3 cut(s)	86, 151, 478
AluI	AGCT	3 cut(s)	86, 151, 478
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	3 cut(s)	199, 379, 419
AoxI	GGCC	6 cut(s)	6, 289, 366, 404, 449, 722
ApeKI	GCWGC	3 cut(s)	86, 836, 839
ApoI	RAATTY	1 cut(s)	872
ArsI	GACNNNNNNTTYG	2 cut(s)	857, 889
AsiGI	ACCGGT	2 cut(s)	546, 715
Asp718I	GGTACC	1 cut(s)	712
AspLEI	GCGC	7 cut(s)	54, 138, 169, 272, 564, 657, 694
AspS9I	GGNCC	8 cut(s)	69, 290, 355, 450, 544, 553, 718, 745
AsuC2I	CCSGG	3 cut(s)	260, 453, 749
AsuHPI	GGTGA	2 cut(s)	50, 673
AvaII	GGWCC	6 cut(s)	69, 355, 544, 553, 718, 745
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	712
BauI	CACGAG	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	221
BbvCI	CCTCAGC	1 cut(s)	518
BbvI	GCAGC	3 cut(s)	73, 823, 826
BccI	CCATC	3 cut(s)	47, 582, 602
BceAI	ACGGC	5 cut(s)	39, 92, 433, 525, 709
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BclI	TGATCA	1 cut(s)	123
BcnI	CCSGG	3 cut(s)	260, 453, 749
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	164
BfoI	RGCGCY	2 cut(s)	55, 139
BglI	GCCNNNNNGGC	1 cut(s)	195
Bme1390I	CCNGG	3 cut(s)	260, 453, 749
Bme18I	GGWCC	6 cut(s)	69, 355, 544, 553, 718, 745
BmgT120I	GGNCC	8 cut(s)	69, 290, 355, 450, 544, 553, 718, 745
BmiI	GGNNCC	1 cut(s)	714
BmrFI	CCNGG	3 cut(s)	260, 453, 749
BmrI	ACTGGG	1 cut(s)	764
BmsI	GCATC	1 cut(s)	805
BmuI	ACTGGG	1 cut(s)	764
BoxI	GACNNNNGTC	2 cut(s)	329, 353
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpmI	CTGGAG	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	2 cut(s)	194, 670
BpuMI	CCSGG	3 cut(s)	260, 453, 749
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	3 cut(s)	258, 351, 407
BsaWI	WCCGGW	4 cut(s)	546, 555, 700, 715
Bsc4I	CCNNNNNNNGG	3 cut(s)	364, 707, 754
Bse118I	RCCGGY	3 cut(s)	66, 546, 715
Bse1I	ACTGG	1 cut(s)	759
BseDI	CCNNGG	3 cut(s)	258, 351, 407
BseGI	GGATG	3 cut(s)	613, 739, 820
BseLI	CCNNNNNNNGG	3 cut(s)	364, 707, 754
BseMII	CTCAG	1 cut(s)	509
BseNI	ACTGG	1 cut(s)	759
BseRI	GAGGAG	1 cut(s)	106
BseX3I	CGGCCG	2 cut(s)	404, 722
BseXI	GCAGC	3 cut(s)	73, 823, 826
BseYI	CCCAGC	1 cut(s)	842
Bsh1236I	CGCG	7 cut(s)	77, 169, 270, 564, 588, 657, 692
Bsh1285I	CGRYCG	4 cut(s)	93, 330, 407, 725
BshFI	GGCC	6 cut(s)	8, 291, 368, 406, 451, 724
BshNI	GGYRCC	1 cut(s)	712
BshTI	ACCGGT	2 cut(s)	546, 715
BsiEI	CGRYCG	4 cut(s)	93, 330, 407, 725
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	3 cut(s)	364, 707, 754
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	6 cut(s)	8, 291, 368, 406, 451, 724
Bso31I	GGTCTC	1 cut(s)	341
Bsp143I	GATC	7 cut(s)	123, 204, 327, 337, 371, 411, 663
Bsp19I	CCATGG	1 cut(s)	351
BspANI	GGCC	6 cut(s)	8, 291, 368, 406, 451, 724
BspCNI	CTCAG	1 cut(s)	510
BspFNI	CGCG	7 cut(s)	77, 169, 270, 564, 588, 657, 692
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	714
BspPI	GGATC	3 cut(s)	199, 379, 419
BspQI	GCTCTTC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	295
BsrFI	RCCGGY	3 cut(s)	66, 546, 715
BsrI	ACTGG	1 cut(s)	759
BssAI	RCCGGY	3 cut(s)	66, 546, 715
BssECI	CCNNGG	3 cut(s)	258, 351, 407
BssMI	GATC	7 cut(s)	123, 204, 327, 337, 371, 411, 663
BssSI	CACGAG	1 cut(s)	592
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	592
Bst6I	CTCTTC	3 cut(s)	158, 281, 314
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstC8I	GCNNGC	4 cut(s)	134, 179, 293, 366
BstDEI	CTNAG	1 cut(s)	518
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	3 cut(s)	613, 739, 820
BstFNI	CGCG	7 cut(s)	77, 169, 270, 564, 588, 657, 692
BstH2I	RGCGCY	2 cut(s)	55, 139
BstHHI	GCGC	7 cut(s)	54, 138, 169, 272, 564, 657, 694
BstKTI	GATC	7 cut(s)	126, 207, 330, 340, 374, 414, 666
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	7 cut(s)	123, 204, 327, 337, 371, 411, 663
BstMCI	CGRYCG	4 cut(s)	93, 330, 407, 725
BstPAI	GACNNNNGTC	2 cut(s)	329, 353
BstSCI	CCNGG	3 cut(s)	258, 451, 747
BstUI	CGCG	7 cut(s)	77, 169, 270, 564, 588, 657, 692
BstV1I	GCAGC	3 cut(s)	73, 823, 826
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BstZI	CGGCCG	2 cut(s)	404, 722
BsuRI	GGCC	6 cut(s)	8, 291, 368, 406, 451, 724
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	2 cut(s)	25, 560
BtsCI	GGATG	3 cut(s)	613, 739, 820
BtsI	GCAGTG	1 cut(s)	794
BtsIMutI	CAGTG	1 cut(s)	794
Cac8I	GCNNGC	4 cut(s)	134, 179, 293, 366
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	7 cut(s)	54, 138, 169, 272, 564, 657, 694
Cfr10I	RCCGGY	3 cut(s)	66, 546, 715
Cfr13I	GGNCC	8 cut(s)	69, 290, 355, 450, 544, 553, 718, 745
CpoI	CGGWCCG	3 cut(s)	69, 718, 745
Csp6I	GTAC	4 cut(s)	388, 526, 583, 713
CspAI	ACCGGT	2 cut(s)	546, 715
CspI	CGGWCCG	3 cut(s)	69, 718, 745
CviAII	CATG	4 cut(s)	16, 352, 421, 739
CviQI	GTAC	4 cut(s)	388, 526, 583, 713
DdeI	CTNAG	1 cut(s)	518
DpnI	GATC	7 cut(s)	125, 206, 329, 339, 373, 413, 665
DpnII	GATC	7 cut(s)	123, 204, 327, 337, 371, 411, 663
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
EaeI	YGGCCR	3 cut(s)	6, 404, 722
EagI	CGGCCG	2 cut(s)	404, 722
Eam1104I	CTCTTC	3 cut(s)	158, 281, 314
EarI	CTCTTC	3 cut(s)	158, 281, 314
EciI	GGCGGA	2 cut(s)	61, 758
EclXI	CGGCCG	2 cut(s)	404, 722
Eco130I	CCWWGG	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	341
Eco32I	GATATC	1 cut(s)	570
Eco47I	GGWCC	6 cut(s)	69, 355, 544, 553, 718, 745
Eco52I	CGGCCG	2 cut(s)	404, 722
Eco57I	CTGAAG	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	872
EcoRV	GATATC	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	4 cut(s)	19, 355, 424, 742
FaiI	YATR	7 cut(s)	17, 353, 422, 492, 740, 809, 831
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	4 cut(s)	15, 351, 420, 738
FauI	CCCGC	3 cut(s)	300, 306, 505
FbaI	TGATCA	1 cut(s)	123
FokI	GGATG	3 cut(s)	620, 746, 827
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	7 cut(s)	53, 137, 168, 271, 563, 656, 693
GsaI	CCCAGC	1 cut(s)	846
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	2 cut(s)	55, 139
HaeIII	GGCC	6 cut(s)	8, 291, 368, 406, 451, 724
HhaI	GCGC	7 cut(s)	54, 138, 169, 272, 564, 657, 694
Hin1II	CATG	4 cut(s)	19, 355, 424, 742
Hin6I	GCGC	7 cut(s)	52, 136, 167, 270, 562, 655, 692
HinP1I	GCGC	7 cut(s)	52, 136, 167, 270, 562, 655, 692
HinfI	GANTC	2 cut(s)	241, 590
HphI	GGTGA	2 cut(s)	50, 673
Hpy166II	GTNNAC	4 cut(s)	358, 460, 507, 670
Hpy188I	TCNGA	2 cut(s)	444, 681
Hpy188III	TCNNGA	5 cut(s)	16, 202, 211, 341, 619
Hpy8I	GTNNAC	4 cut(s)	358, 460, 507, 670
Hpy99I	CGWCG	3 cut(s)	347, 401, 419
HpyAV	CCTTC	3 cut(s)	616, 636, 773
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	2 cut(s)	597, 886
HpyF3I	CTNAG	1 cut(s)	518
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	4 cut(s)	19, 355, 424, 742
HspAI	GCGC	7 cut(s)	52, 136, 167, 270, 562, 655, 692
KpnI	GGTACC	1 cut(s)	716
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	7 cut(s)	123, 204, 327, 337, 371, 411, 663
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	2 cut(s)	300, 784
Lsp1109I	GCAGC	3 cut(s)	73, 823, 826
LweI	GCATC	1 cut(s)	805
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	7 cut(s)	125, 206, 329, 339, 373, 413, 665
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	7 cut(s)	123, 204, 327, 337, 371, 411, 663
MflI	RGATCY	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	1 cut(s)	872
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	235, 584
MmeI	TCCRAC	2 cut(s)	408, 531
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	8
MspR9I	CCNGG	3 cut(s)	260, 453, 749
MvnI	CGCG	7 cut(s)	77, 169, 270, 564, 588, 657, 692
NciI	CCSGG	3 cut(s)	260, 453, 749
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	7 cut(s)	123, 204, 327, 337, 371, 411, 663
NlaIII	CATG	4 cut(s)	19, 355, 424, 742
NlaIV	GGNNCC	1 cut(s)	714
NmeAIII	GCCGAG	2 cut(s)	432, 459
NmuCI	GTSAC	1 cut(s)	56
PagI	TCATGA	1 cut(s)	15
PciSI	GCTCTTC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 396
PflFI	GACNNNGTC	1 cut(s)	395
PinAI	ACCGGT	2 cut(s)	546, 715
Ple19I	CGATCG	1 cut(s)	330
PleI	GAGTC	2 cut(s)	235, 584
PpsI	GAGTC	2 cut(s)	235, 584
PshAI	GACNNNNGTC	2 cut(s)	329, 353
PspFI	CCCAGC	1 cut(s)	842
PspN4I	GGNNCC	1 cut(s)	714
PspPI	GGNCC	8 cut(s)	69, 290, 355, 450, 544, 553, 718, 745
PsuI	RGATCY	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	395
PvuI	CGATCG	1 cut(s)	330
RsaI	GTAC	4 cut(s)	389, 527, 584, 714
RsaNI	GTAC	4 cut(s)	388, 526, 583, 713
Rsr2I	CGGWCCG	3 cut(s)	69, 718, 745
RsrII	CGGWCCG	3 cut(s)	69, 718, 745
SapI	GCTCTTC	1 cut(s)	158
Sau3AI	GATC	7 cut(s)	123, 204, 327, 337, 371, 411, 663
Sau96I	GGNCC	8 cut(s)	69, 290, 355, 450, 544, 553, 718, 745
SchI	GAGTC	2 cut(s)	235, 584
ScrFI	CCNGG	3 cut(s)	260, 453, 749
SetI	ASST	6 cut(s)	88, 153, 441, 480, 498, 606
SfaNI	GCATC	1 cut(s)	805
SinI	GGWCC	6 cut(s)	69, 355, 544, 553, 718, 745
SmlI	CTYRAG	2 cut(s)	209, 649
SmoI	CTYRAG	2 cut(s)	209, 649
Sse9I	AATT	1 cut(s)	872
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	258, 451, 747
StyI	CCWWGG	1 cut(s)	351
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	4 cut(s)	244, 336, 342, 414
TasI	AATT	1 cut(s)	872
TauI	GCSGC	7 cut(s)	77, 98, 141, 270, 304, 379, 451
TscAI	CASTG	1 cut(s)	794
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	3 cut(s)	86, 836, 839
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	4, 32
TspRI	CASTG	1 cut(s)	794
Tth111I	GACNNNGTC	1 cut(s)	395
VpaK11BI	GGWCC	6 cut(s)	69, 355, 544, 553, 718, 745
XapI	RAATTY	1 cut(s)	872
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.