MD00G1007300.v1.1

Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
1022493 .. 1023533
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1007300.v1.1.491

Sequence Viewer

Length: 1041 bp
ATGGTGTCCAAGATTTTGAAGAAAACCGCATTCGACAAAAATCCCATGTCCACCAAGGGGTGTCGTGGCATAAGGCAGCGCCACCGCCGCAACTGCTCCGTTATAAAGGCCGCAGCTGCTGCCTCCTCTATCGTGCTCACCCGCATTGGCTCCAAAGGATTTAAGATCGTTCAAAAAACCCAAACCCGAGAGGGTGAACCTGAATCCGAATTATCCCGGGAACGCCGTCCGCTCCCGCCCCTGACTTCGCCGGAGAAGCGGACCGTGTTTCTCGATCTCGATGAGACACTGGTCCATTCCGTAACGGGCCCGCCGCCCAAGAGATTTGACTTCGTCGTACGGCCGATGATTCGCGGCAAAGTAATGACTTTCTACGTCGTGAAACGTCCTGGCGTGGACGAGTTTTTGGAGAAATTAGGAAACAAGTACGAGGTGGTAGTGTTCACGGCCGGGTTGCGCGAGTACGCGACGCTGGTGCTCGACCGGCTGGACCGGAAGCGGGTGATTTCGCACCGGCTATTCAGGGACACGTGTACGGAGGTGAATGGGAGGTTCGTGAAGGACCTGGCAATTCAGGGGAGGGACCTGAGCCGGCTGGTGATTGTCGACGACAACCCCAACGCGTACAGCTTCCAGCCGGAGAACGCAATCTCAATCCTGCCGTTTGTGGACGACGTGGCCGACCGGGAGCTGAGGAGGGTGCTGGAGTTCTTCGAGGACGAGGATGCTCGCTGCTGCGACGACATTAGGGACGCTGTGAGGCGGTTTGTTGGGGATGACGAGTCGATAACGTCATCAGACGACGACGACGATGGGTTGGAGGTGGCGTTGGAGTTGGAGGAGATGATGGATACCAAGTGTAAGCTCCCGGTGCTGATGGTTTCATCAAAAGCGCGGGAAATCATGAGTCGACGTGAATTTCACCAGTTTGGGATACCTATTTTAGGGTTTCGGACGAGGATGGTGGTGATGTTCTGTTTGTTTCTGCTACTTCTTCATGTAATGTGCTTTCGCACGGAATCAGTTCACACTTTTTTCTAG

Protein Analysis

347

Amino Acids

39.78

Weight (kDa)

8.57

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 88 - 250 1.1e-50 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 232
AccI GTMKAC 2 cut(s) 606, 910
AccII CGCG 5 cut(s) 354, 459, 467, 623, 895
AcoI YGGCCR 3 cut(s) 341, 447, 678
AcsI RAATTY 1 cut(s) 917
AcvI CACGTG 1 cut(s) 531
AfaI GTAC 5 cut(s) 339, 428, 464, 535, 626
AfiI CCNNNNNNNGG 3 cut(s) 57, 499, 944
AflIII ACRYGT 3 cut(s) 528, 530, 621
AgsI TTSAA 2 cut(s) 19, 173
AjiI CACGTC 2 cut(s) 676, 914
AjnI CCWGG 2 cut(s) 388, 564
AluBI AGCT 4 cut(s) 116, 630, 691, 865
AluI AGCT 4 cut(s) 116, 630, 691, 865
Alw21I GWGCWC 2 cut(s) 138, 480
Alw26I GTCTC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 119
Ama87I CYCGRG 2 cut(s) 186, 216
AoxI GGCC 5 cut(s) 108, 307, 341, 447, 678
ApaI GGGCCC 1 cut(s) 311
ApeKI GCWGC 6 cut(s) 76, 113, 116, 119, 732, 735
ApoI RAATTY 1 cut(s) 917
Asp700I GAANNNNTTC 1 cut(s) 1023
AspLEI GCGC 3 cut(s) 81, 459, 895
AspS9I GGNCC 7 cut(s) 261, 292, 307, 308, 490, 562, 583
AsuC2I CCSGG 5 cut(s) 217, 218, 451, 686, 869
AsuHPI GGTGA 7 cut(s) 130, 206, 514, 553, 610, 914, 979
AvaI CYCGRG 2 cut(s) 186, 216
AvaII GGWCC 5 cut(s) 261, 292, 490, 562, 583
BaeGI GKGCMC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 311
BbrPI CACGTG 1 cut(s) 531
Bbv12I GWGCWC 2 cut(s) 138, 480
BbvCI CCTCAGC 1 cut(s) 692
BbvI GCAGC 6 cut(s) 88, 103, 106, 125, 719, 722
BccI CCATC 4 cut(s) 806, 841, 871, 955
BceAI ACGGC 4 cut(s) 210, 356, 462, 646
BcgI CGANNNNNNTGC 2 cut(s) 457, 491
BciT130I CCWGG 2 cut(s) 390, 566
BciVI GTATCC 2 cut(s) 844, 927
BcnI CCSGG 5 cut(s) 217, 218, 451, 686, 869
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 1039
BfoI RGCGCY 1 cut(s) 82
BfuI GTATCC 2 cut(s) 844, 927
Bme1390I CCNGG 7 cut(s) 217, 218, 390, 451, 566, 686, 869
Bme18I GGWCC 5 cut(s) 261, 292, 490, 562, 583
BmeT110I CYCGRG 2 cut(s) 186, 216
BmgBI CACGTC 2 cut(s) 676, 914
BmgT120I GGNCC 7 cut(s) 261, 292, 307, 308, 490, 562, 583
BmiI GGNNCC 3 cut(s) 151, 309, 584
BmrFI CCNGG 7 cut(s) 217, 218, 390, 451, 566, 686, 869
BmsI GCATC 1 cut(s) 715
BoxI GACNNNNGTC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 725
Bpu10I CCTNAGC 2 cut(s) 587, 692
BpuMI CCSGG 5 cut(s) 217, 218, 451, 686, 869
BsaAI YACGTR 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 54, 216
BsaWI WCCGGW 1 cut(s) 492
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 499, 944
Bse118I RCCGGY 3 cut(s) 483, 513, 591
Bse1I ACTGG 2 cut(s) 294, 925
BseBI CCWGG 2 cut(s) 390, 566
BseDI CCNNGG 2 cut(s) 54, 216
BseGI GGATG 3 cut(s) 730, 781, 966
BseLI CCNNNNNNNGG 3 cut(s) 57, 499, 944
BseMII CTCAG 2 cut(s) 578, 683
BseNI ACTGG 2 cut(s) 294, 925
BseRI GAGGAG 3 cut(s) 115, 709, 854
BseSI GKGCMC 1 cut(s) 311
BseX3I CGGCCG 2 cut(s) 341, 447
BseXI GCAGC 6 cut(s) 88, 103, 106, 125, 719, 722
Bsh1236I CGCG 5 cut(s) 354, 459, 467, 623, 895
Bsh1285I CGRYCG 4 cut(s) 344, 450, 484, 685
BshFI GGCC 5 cut(s) 110, 309, 343, 449, 680
BsiEI CGRYCG 4 cut(s) 344, 450, 484, 685
BsiHKAI GWGCWC 2 cut(s) 138, 480
BsiHKCI CYCGRG 2 cut(s) 186, 216
BsiWI CGTACG 1 cut(s) 337
BslFI GGGAC 3 cut(s) 539, 596, 764
BslI CCNNNNNNNGG 3 cut(s) 57, 499, 944
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 3 cut(s) 539, 596, 764
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 5 cut(s) 110, 309, 343, 449, 680
BsoBI CYCGRG 2 cut(s) 186, 216
Bsp120I GGGCCC 1 cut(s) 307
Bsp1286I GDGCHC 3 cut(s) 138, 311, 480
Bsp143I GATC 2 cut(s) 165, 274
BspANI GGCC 5 cut(s) 110, 309, 343, 449, 680
BspCNI CTCAG 2 cut(s) 579, 684
BspFNI CGCG 5 cut(s) 354, 459, 467, 623, 895
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 3 cut(s) 151, 309, 584
BsrBI CCGCTC 1 cut(s) 232
BsrFI RCCGGY 3 cut(s) 483, 513, 591
BsrI ACTGG 2 cut(s) 294, 925
BssAI RCCGGY 3 cut(s) 483, 513, 591
BssECI CCNNGG 2 cut(s) 54, 216
BssMI GATC 2 cut(s) 165, 274
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 2 cut(s) 390, 566
Bst4CI ACNGT 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 119
BstBAI YACGTR 1 cut(s) 531
BstC8I GCNNGC 3 cut(s) 311, 593, 730
BstDEI CTNAG 2 cut(s) 587, 692
BstENI CCTNNNNNAGG 1 cut(s) 942
BstF5I GGATG 3 cut(s) 730, 781, 966
BstFNI CGCG 5 cut(s) 354, 459, 467, 623, 895
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 3 cut(s) 81, 459, 895
BstKTI GATC 2 cut(s) 168, 277
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 2 cut(s) 165, 274
BstMCI CGRYCG 4 cut(s) 344, 450, 484, 685
BstMWI GCNNNNNNNGC 7 cut(s) 87, 93, 116, 119, 256, 484, 871
BstNI CCWGG 2 cut(s) 390, 566
BstPAI GACNNNNGTC 1 cut(s) 290
BstSCI CCNGG 7 cut(s) 215, 216, 388, 449, 564, 684, 867
BstSLI GKGCMC 1 cut(s) 311
BstUI CGCG 5 cut(s) 354, 459, 467, 623, 895
BstV1I GCAGC 6 cut(s) 88, 103, 106, 125, 719, 722
BstZI CGGCCG 2 cut(s) 341, 447
BsuI GTATCC 2 cut(s) 844, 927
BsuRI GGCC 5 cut(s) 110, 309, 343, 449, 680
BtrI CACGTC 2 cut(s) 676, 914
BtsCI GGATG 3 cut(s) 730, 781, 966
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 3 cut(s) 311, 593, 730
CaiI CAGNNNCTG 1 cut(s) 119
CciI TCATGA 1 cut(s) 903
CfoI GCGC 3 cut(s) 81, 459, 895
Cfr10I RCCGGY 3 cut(s) 483, 513, 591
Cfr13I GGNCC 7 cut(s) 261, 292, 307, 308, 490, 562, 583
Cfr9I CCCGGG 1 cut(s) 216
CpoI CGGWCCG 1 cut(s) 261
CseI GACGC 2 cut(s) 478, 761
Csp6I GTAC 5 cut(s) 338, 427, 463, 534, 625
CspI CGGWCCG 1 cut(s) 261
CviAII CATG 3 cut(s) 46, 904, 998
CviQI GTAC 5 cut(s) 338, 427, 463, 534, 625
DdeI CTNAG 2 cut(s) 587, 692
DpnI GATC 2 cut(s) 167, 276
DpnII GATC 2 cut(s) 165, 274
EaeI YGGCCR 3 cut(s) 341, 447, 678
EagI CGGCCG 2 cut(s) 341, 447
EclXI CGGCCG 2 cut(s) 341, 447
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 5 cut(s) 261, 292, 490, 562, 583
Eco52I CGGCCG 2 cut(s) 341, 447
Eco72I CACGTG 1 cut(s) 531
Eco88I CYCGRG 2 cut(s) 186, 216
EcoNI CCTNNNNNAGG 1 cut(s) 942
EcoO109I RGGNCCY 2 cut(s) 562, 583
EcoRII CCWGG 2 cut(s) 388, 564
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 3 cut(s) 49, 907, 1001
FaiI YATR 5 cut(s) 47, 71, 104, 905, 999
FaqI GGGAC 3 cut(s) 539, 596, 764
FatI CATG 3 cut(s) 45, 903, 997
FauI CCCGC 5 cut(s) 149, 243, 318, 492, 888
FblI GTMKAC 2 cut(s) 606, 910
FokI GGATG 3 cut(s) 737, 788, 973
FriOI GRGCYC 1 cut(s) 311
FspBI CTAG 1 cut(s) 1039
GlaI GCGC 3 cut(s) 80, 458, 894
GsuI CTGGAG 1 cut(s) 725
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 5 cut(s) 110, 309, 343, 449, 680
HgaI GACGC 2 cut(s) 478, 761
HhaI GCGC 3 cut(s) 81, 459, 895
Hin1II CATG 3 cut(s) 49, 907, 1001
Hin6I GCGC 3 cut(s) 79, 457, 893
HinP1I GCGC 3 cut(s) 79, 457, 893
HincII GTYRAC 2 cut(s) 607, 911
HindII GTYRAC 2 cut(s) 607, 911
HinfI GANTC 5 cut(s) 203, 349, 782, 907, 1019
HphI GGTGA 7 cut(s) 130, 206, 514, 553, 610, 914, 979
Hpy166II GTNNAC 9 cut(s) 51, 197, 397, 444, 534, 607, 670, 911, 1027
Hpy188I TCNGA 3 cut(s) 208, 799, 954
Hpy188III TCNNGA 5 cut(s) 272, 278, 379, 556, 904
Hpy8I GTNNAC 9 cut(s) 51, 197, 397, 444, 534, 607, 670, 911, 1027
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 6 cut(s) 375, 385, 530, 675, 791, 913
HpyF10VI GCNNNNNNNGC 7 cut(s) 87, 93, 116, 119, 256, 484, 871
HpyF3I CTNAG 2 cut(s) 587, 692
HpySE526I ACGT 6 cut(s) 375, 385, 530, 675, 791, 913
Hsp92II CATG 3 cut(s) 49, 907, 1001
HspAI GCGC 3 cut(s) 79, 457, 893
KroI GCCGGC 1 cut(s) 591
KroNI GCCGGC 1 cut(s) 593
Kzo9I GATC 2 cut(s) 165, 274
LmnI GCTCC 5 cut(s) 101, 155, 237, 688, 870
Lsp1109I GCAGC 6 cut(s) 88, 103, 106, 125, 719, 722
LweI GCATC 1 cut(s) 715
MaeI CTAG 1 cut(s) 1039
MaeII ACGT 6 cut(s) 375, 385, 530, 675, 791, 913
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 167, 276
MbiI CCGCTC 1 cut(s) 232
MboI GATC 2 cut(s) 165, 274
MboII GAAGA 3 cut(s) 31, 703, 986
MhlI GDGCHC 3 cut(s) 138, 311, 480
MluCI AATT 4 cut(s) 209, 413, 570, 917
MluI ACGCGT 1 cut(s) 621
MlyI GAGTC 2 cut(s) 791, 916
MmeI TCCRAC 3 cut(s) 798, 810, 816
MroNI GCCGGC 1 cut(s) 591
MroXI GAANNNNTTC 1 cut(s) 1023
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 116
MspR9I CCNGG 7 cut(s) 217, 218, 390, 451, 566, 686, 869
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 2 cut(s) 390, 566
MvnI CGCG 5 cut(s) 354, 459, 467, 623, 895
MwoI GCNNNNNNNGC 7 cut(s) 87, 93, 116, 119, 256, 484, 871
NaeI GCCGGC 1 cut(s) 593
NciI CCSGG 5 cut(s) 217, 218, 451, 686, 869
NdeII GATC 2 cut(s) 165, 274
NgoMIV GCCGGC 1 cut(s) 591
NlaIII CATG 3 cut(s) 49, 907, 1001
NlaIV GGNNCC 3 cut(s) 151, 309, 584
PagI TCATGA 1 cut(s) 903
PcsI WCGNNNNNNNCGW 2 cut(s) 678, 807
PctI GAATGC 1 cut(s) 29
PdiI GCCGGC 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 1023
PfeI GAWTC 3 cut(s) 203, 349, 1019
Pfl23II CGTACG 1 cut(s) 337
PflFI GACNNNGTC 1 cut(s) 332
PleI GAGTC 2 cut(s) 790, 915
PmaCI CACGTG 1 cut(s) 531
PmlI CACGTG 1 cut(s) 531
PpsI GAGTC 2 cut(s) 790, 915
Ppu21I YACGTR 1 cut(s) 531
PpuMI RGGWCCY 2 cut(s) 562, 583
PshAI GACNNNNGTC 1 cut(s) 290
PsiI TTATAA 1 cut(s) 104
Psp5II RGGWCCY 2 cut(s) 562, 583
Psp6I CCWGG 2 cut(s) 388, 564
PspCI CACGTG 1 cut(s) 531
PspGI CCWGG 2 cut(s) 388, 564
PspLI CGTACG 1 cut(s) 337
PspN4I GGNNCC 3 cut(s) 151, 309, 584
PspOMI GGGCCC 1 cut(s) 307
PspPI GGNCC 7 cut(s) 261, 292, 307, 308, 490, 562, 583
PspPPI RGGWCCY 2 cut(s) 562, 583
PstNI CAGNNNCTG 1 cut(s) 119
PsyI GACNNNGTC 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 5 cut(s) 339, 428, 464, 535, 626
RsaNI GTAC 5 cut(s) 338, 427, 463, 534, 625
Rsr2I CGGWCCG 1 cut(s) 261
RsrII CGGWCCG 1 cut(s) 261
SalI GTCGAC 2 cut(s) 605, 909
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 2 cut(s) 165, 274
Sau96I GGNCC 7 cut(s) 261, 292, 307, 308, 490, 562, 583
SchI GAGTC 2 cut(s) 791, 916
ScrFI CCNGG 7 cut(s) 217, 218, 390, 451, 566, 686, 869
SduI GDGCHC 3 cut(s) 138, 311, 480
SfaNI GCATC 1 cut(s) 715
SinI GGWCC 5 cut(s) 261, 292, 490, 562, 583
SmaI CCCGGG 1 cut(s) 218
Sse9I AATT 4 cut(s) 209, 413, 570, 917
SspMI CTAG 1 cut(s) 1039
StyD4I CCNGG 7 cut(s) 215, 216, 388, 449, 564, 684, 867
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 6 cut(s) 378, 388, 533, 678, 794, 916
TaqI TCGA 8 cut(s) 33, 273, 279, 480, 606, 714, 785, 910
TasI AATT 4 cut(s) 209, 413, 570, 917
TauI GCSGC 4 cut(s) 90, 113, 316, 357
TfiI GAWTC 3 cut(s) 203, 349, 1019
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 294
TseI GCWGC 6 cut(s) 76, 113, 116, 119, 732, 735
TspDTI ATGAA 2 cut(s) 873, 986
TspGWI ACGGA 4 cut(s) 88, 289, 551, 1031
TspMI CCCGGG 1 cut(s) 216
TspRI CASTG 1 cut(s) 294
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 5 cut(s) 261, 292, 490, 562, 583
XagI CCTNNNNNAGG 1 cut(s) 942
XapI RAATTY 1 cut(s) 917
XmaI CCCGGG 1 cut(s) 216
XmiI GTMKAC 2 cut(s) 606, 910
XmnI GAANNNNTTC 1 cut(s) 1023
XspI CTAG 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.