Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009088

Physical Location & Seq

Genomic Coordinates Forward (+)

18622647 .. 18625697

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGATGAGACGGAAGATTTTTCTCTTTGGTGATTCCATCACTGAAGAATCCTTTAGTGACGGTGGCTGGGGTGCTTCTCTCGCCGATCTTCTCCGCCGCAAGGCTGATATGGTGCTACGAGGATACAGTGGATATAACACGAGGTGGGCACTGAAAGTGGTGGAGAGAGTTTTTCCGGTGGCAGAAGAAGACGGCGGAGATTCTCCGGCAGCTGTGACTGTTTTCTTTGGAGCGAACGACGCGTGTCTTCCGGAGAGATGCTCGGGGTTTCAGCATGTGCCACTTCACGAGTACAAGCAGAATCTTCGCTCTATTGTTTCGTTTCTCAAGAATCGTTGGCCACAAACGGCCATTATTCTTATAACTCCGCCTCCAATAGACGAAGAGGCCCGCCTCAGATATCCTTATATCGAAAACACAACGGGGTTGCCGGAAAGAACGAATGAAGTAGCCGGACTATACGCAAAAGCATGTATAGCAGTAGCTGAGGAATGTCAAATTTCGGTCACTGATCTTTGGTCCAAAATGCAGCAAATTCCAAATTGGCAAACAGAATGTCTATGGGACGGGTTACATTTGAGTCGGGTCGGTAACAAAGTAGTGTTTGAAGAAGTAGCAAAGAAGCTTAAAGAAGAAGGCATTGGAGCTGAGGACTTAGCTGTGGATCTTCCCCTTATAGAAGATGTTGACCCTAAGGATCCTCTCAAATCCTTTGATGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

241

Amino Acids

27.15

Weight (kDa)

4.87

Isoelectric Point (pI)

60.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	6 - 184	5e-30	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	8 - 186	4.8e-22	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45920 AT5G45920 AT5G45920 AT5G45920
fragaria_vesca	FvH4_3g04000 FvH4_3g08070 FvH4_3g08070
malus_domestica	MD05G1304500.v1.1
prunus_persica	Prupe.4G058000_v2.0.a1 Prupe.4G058000_v2.0.a1
pyrus_communis	pycom05g28170
rosa_chinensis	RchiOBHm_Chr5g0010151
rosa_laevigata	RLG00000031726
rosa_multiflora	Rmu_sc0000818.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066040
rosa_rugosa	Rorug04G0449300 Rorug04G0449400
rosa_samantha	Rh5AG080300 Rh5BG074800 Rh5CG088600 Rh5DG075700
rosa_wichuraiana	Rw5G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AccII	CGCG	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	5 cut(s)	94, 97, 195, 368, 391
AclWI	GGATC	3 cut(s)	672, 692, 705
AcoI	YGGCCR	2 cut(s)	338, 348
AcsI	RAATTY	2 cut(s)	498, 534
AcuI	CTGAAG	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	608
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	5 cut(s)	212, 485, 625, 647, 659
AluI	AGCT	5 cut(s)	212, 485, 625, 647, 659
AlwI	GGATC	3 cut(s)	672, 692, 705
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	3 cut(s)	338, 348, 387
ApeKI	GCWGC	2 cut(s)	209, 529
ApoI	RAATTY	2 cut(s)	498, 534
ArsI	GACNNNNNNTTYG	2 cut(s)	541, 573
AspS9I	GGNCC	2 cut(s)	388, 519
AsuHPI	GGTGA	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	519
AxyI	CCTNAGG	1 cut(s)	693
BaeGI	GKGCMC	1 cut(s)	151
BalI	TGGCCA	1 cut(s)	340
BamHI	GGATCC	1 cut(s)	697
BauI	CACGAG	2 cut(s)	139, 287
BbsI	GAAGAC	2 cut(s)	195, 239
BbvCI	CCTCAGC	2 cut(s)	486, 648
BbvI	GCAGC	2 cut(s)	221, 541
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	2 cut(s)	208, 363
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciVI	GTATCC	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	97, 210, 530
BlsI	GCNGC	3 cut(s)	98, 211, 531
Bme18I	GGWCC	1 cut(s)	519
BmeT110I	CYCGRG	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	388, 519
BmiI	GGNNCC	1 cut(s)	699
BmsI	GCATC	1 cut(s)	248
BoxI	GACNNNNGTC	1 cut(s)	243
BpiI	GAAGAC	2 cut(s)	195, 239
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
Bpu10I	CCTNAGC	2 cut(s)	486, 648
BpuEI	CTTGAG	1 cut(s)	311
BsaWI	WCCGGW	2 cut(s)	175, 250
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse21I	CCTNAGG	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	3 cut(s)	409, 477, 639
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	221, 541
BseYI	CCCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	3 cut(s)	340, 350, 389
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	5 cut(s)	176, 206, 251, 431, 453
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	3 cut(s)	340, 350, 389
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	85, 511, 664, 697
BspACI	CCGC	5 cut(s)	94, 97, 195, 368, 391
BspANI	GGCC	3 cut(s)	340, 350, 389
BspCNI	CTCAG	3 cut(s)	408, 478, 640
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	699
BspPI	GGATC	3 cut(s)	672, 692, 705
BssMI	GATC	4 cut(s)	85, 511, 664, 697
BssSI	CACGAG	2 cut(s)	139, 287
Bst2BI	CACGAG	2 cut(s)	139, 287
Bst4CI	ACNGT	3 cut(s)	62, 128, 220
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	5 cut(s)	395, 486, 648, 655, 693
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	4 cut(s)	88, 514, 667, 700
BstMBI	GATC	4 cut(s)	85, 511, 664, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 239, 476
BstNSI	RCATGY	2 cut(s)	278, 474
BstPAI	GACNNNNGTC	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	221, 541
BstV2I	GAAGAC	2 cut(s)	195, 239
BstX2I	RGATCY	2 cut(s)	664, 697
BstYI	RGATCY	2 cut(s)	664, 697
Bsu36I	CCTNAGG	1 cut(s)	693
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	340, 350, 389
BtsIMutI	CAGTG	4 cut(s)	39, 133, 149, 507
Cac8I	GCNNGC	1 cut(s)	391
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	388, 519
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	2 cut(s)	275, 471
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	5 cut(s)	395, 486, 648, 655, 693
DpnI	GATC	4 cut(s)	87, 513, 666, 699
DpnII	GATC	4 cut(s)	85, 511, 664, 697
DraIII	CACNNNGTG	1 cut(s)	144
EaeI	YGGCCR	2 cut(s)	338, 348
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	3 cut(s)	83, 210, 357
Eco32I	GATATC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	519
Eco57I	CTGAAG	1 cut(s)	63
Eco81I	CCTNAGG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	401
FaeI	CATG	2 cut(s)	278, 474
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	2 cut(s)	274, 470
FauI	CCCGC	1 cut(s)	398
Fnu4HI	GCNGC	3 cut(s)	97, 210, 530
Fsp4HI	GCNGC	3 cut(s)	97, 210, 530
GluI	GCNGC	3 cut(s)	97, 210, 530
GsaI	CCCAGC	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	340, 350, 389
HapII	CCGG	5 cut(s)	176, 206, 251, 431, 453
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	278, 474
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	6 cut(s)	32, 47, 200, 301, 331, 580
HpaII	CCGG	5 cut(s)	176, 206, 251, 431, 453
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	1 cut(s)	398
Hpy188III	TCNNGA	3 cut(s)	251, 287, 328
Hpy8I	GTNNAC	1 cut(s)	688
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	629
HpyCH4III	ACNGT	3 cut(s)	62, 128, 220
HpyCH4V	TGCA	1 cut(s)	529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 239, 476
HpyF3I	CTNAG	5 cut(s)	395, 486, 648, 655, 693
Hsp92II	CATG	2 cut(s)	278, 474
Kpn2I	TCCGGA	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	85, 511, 664, 697
LmnI	GCTCC	2 cut(s)	230, 644
LpnPI	CCDG	6 cut(s)	52, 189, 219, 264, 444, 466
Lsp1109I	GCAGC	2 cut(s)	221, 541
LweI	GCATC	1 cut(s)	248
MaeIII	GTNAC	5 cut(s)	56, 214, 505, 570, 590
MalI	GATC	4 cut(s)	87, 513, 666, 699
MboI	GATC	4 cut(s)	85, 511, 664, 697
MflI	RGATCY	2 cut(s)	664, 697
MhlI	GDGCHC	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	340
MluCI	AATT	3 cut(s)	498, 534, 541
MluI	ACGCGT	1 cut(s)	240
MluNI	TGGCCA	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	589
MnlI	CCTC	8 cut(s)	113, 135, 379, 381, 404, 481, 643, 711
Mox20I	TGGCCA	1 cut(s)	340
MroI	TCCGGA	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	340
MseI	TTAA	1 cut(s)	627
Msp20I	TGGCCA	1 cut(s)	340
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	5 cut(s)	176, 206, 251, 431, 453
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	80, 239, 476
NdeII	GATC	4 cut(s)	85, 511, 664, 697
NlaIII	CATG	2 cut(s)	278, 474
NlaIV	GGNNCC	1 cut(s)	699
NmuCI	GTSAC	3 cut(s)	56, 214, 505
NspI	RCATGY	2 cut(s)	278, 474
PfeI	GAWTC	5 cut(s)	32, 47, 200, 301, 331
PkrI	GCNGC	3 cut(s)	98, 211, 531
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
PshAI	GACNNNNGTC	1 cut(s)	243
PsiI	TTATAA	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	699
PspPI	GGNCC	2 cut(s)	388, 519
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	664, 697
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	3 cut(s)	97, 210, 530
Sau3AI	GATC	4 cut(s)	85, 511, 664, 697
Sau96I	GGNCC	2 cut(s)	388, 519
SchI	GAGTC	1 cut(s)	589
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	6 cut(s)	146, 214, 487, 627, 649, 661
SfaNI	GCATC	1 cut(s)	248
SinI	GGWCC	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	498, 534, 541
SsiI	CCGC	5 cut(s)	94, 97, 195, 368, 391
TaaI	ACNGT	3 cut(s)	62, 128, 220
TaqI	TCGA	1 cut(s)	411
TaqII	GACCGA	1 cut(s)	493
TasI	AATT	3 cut(s)	498, 534, 541
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	5 cut(s)	32, 47, 200, 301, 331
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	4 cut(s)	46, 133, 156, 514
TseFI	GTSAC	3 cut(s)	56, 214, 505
TseI	GCWGC	2 cut(s)	209, 529
Tsp45I	GTSAC	3 cut(s)	56, 214, 505
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	4 cut(s)	46, 133, 156, 514
VpaK11BI	GGWCC	1 cut(s)	519
XapI	RAATTY	2 cut(s)	498, 534
XceI	RCATGY	2 cut(s)	278, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.