Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009088

Physical Location & Seq

Genomic Coordinates Forward (+)

4751135 .. 4755031

Gene Structure 3897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGGCCGAAGATTTACCTTTTCGGTGATTCGATCACGGAGGAGTCGTTTGGCGACGGTGGCTGGGGTGCTTCTCTTGCCCACCATTTCTCTCGCAATGTTGATGTGGTGCTGAGAGGTTATAGCGGGTACAACACTAGGTGGGCTGAGATGGTCCTGGAGAGGGTTTTTCCGGGGAGTCAAGACGGCGGCGGTGAAGTGCCGTTAGCTGTCACCGTCTTCTTTGGCGCTAATGACGCTTGCCTTCCCGATAGATGCTCTGGTTTTCAGCATGTGCCGCTTGACGAGTACAAGCACAACCTCCGCTCCATTGTCTCCTTCCTTAAGAAGCAATGGCCTACTACTCACATTATTCTCATCACACCTCCTCCTATTGATGAAGAAGCACGCCTTCTGTTTCCCTATATTGAGAATCCATTGAATCAGCCTGAGAGGACAAATGAAGCTGCTGGTGCTTTTGCTGAGGCATGTGTTGCTGTAGCTCGAGAAAGTGGTCTCCCAGTAATTGATCTCTGGACCAAAATGCAGCAGTTTCCTGACTGGCAGAAAGCTCATCTAAGGGATGGTTTGCACCTTGCTCCACGGGGAAACAGACTCGTTTTCGAGGAAGTGGTTGCAAAGCTAAGGGATGAAGGATTGAGTCTAGAAAGTTTACCAGTCGATCTCCCGCTTATAGCTGATATTGACCCTAATGACCCTCTGAAGGCTTTTCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

240

Amino Acids

26.73

Weight (kDa)

5.25

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	5 - 204	4.7e-29	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	7 - 199	2e-28	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45920 AT5G45920 AT5G45920 AT5G45920
fragaria_vesca	FvH4_3g04000 FvH4_3g08070 FvH4_3g08070
malus_domestica	MD05G1304500.v1.1
prunus_persica	Prupe.4G058000_v2.0.a1 Prupe.4G058000_v2.0.a1
pyrus_communis	pycom05g28170
rosa_chinensis	RchiOBHm_Chr5g0010151
rosa_laevigata	RLG00000031726
rosa_multiflora	Rmu_sc0000818.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066040
rosa_rugosa	Rorug04G0449300 Rorug04G0449400
rosa_samantha	Rh5AG080300 Rh5BG074800 Rh5CG088600 Rh5DG075700
rosa_wichuraiana	Rw5G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	306
AciI	CCGC	6 cut(s)	126, 189, 192, 278, 304, 668
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	131, 290
AfiI	CCNNNNNNNGG	2 cut(s)	163, 703
AflII	CTTAAG	1 cut(s)	323
AgsI	TTSAA	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	6 cut(s)	209, 446, 482, 551, 622, 677
AluI	AGCT	6 cut(s)	209, 446, 482, 551, 622, 677
Alw26I	GTCTC	2 cut(s)	319, 500
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	2 cut(s)	5, 335
ApeKI	GCWGC	2 cut(s)	446, 526
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	154, 516
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	3 cut(s)	38, 205, 206
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	2 cut(s)	154, 516
BbsI	GAAGAC	1 cut(s)	211
BbvCI	CCTCAGC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	433, 538
BccI	CCATC	2 cut(s)	145, 557
BceAI	ACGGC	2 cut(s)	187, 202
BciT130I	CCWGG	1 cut(s)	158
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	319, 500
BfaI	CTAG	2 cut(s)	138, 644
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	231
BfrI	CTTAAG	1 cut(s)	323
BisI	GCNGC	4 cut(s)	190, 278, 447, 527
BlsI	GCNGC	4 cut(s)	191, 279, 448, 528
Bme1390I	CCNGG	2 cut(s)	158, 174
Bme18I	GGWCC	2 cut(s)	154, 516
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	154, 516
BmrFI	CCNGG	2 cut(s)	158, 174
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	494
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	2 cut(s)	462, 623
BpuMI	CCSGG	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	173, 581
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 62, 290, 320, 352, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 703
Bse1I	ACTGG	3 cut(s)	500, 545, 656
Bse3DI	GCAATG	2 cut(s)	103, 338
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	173, 581
BseGI	GGATG	2 cut(s)	568, 634
BseLI	CCNNNNNNNGG	2 cut(s)	163, 703
BseMI	GCAATG	2 cut(s)	103, 338
BseMII	CTCAG	4 cut(s)	104, 138, 420, 453
BseNI	ACTGG	3 cut(s)	500, 545, 656
BseRI	GAGGAG	2 cut(s)	56, 357
BseXI	GCAGC	2 cut(s)	433, 538
BseYI	CCCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	7, 337
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	163, 703
BsmAI	GTCTC	2 cut(s)	319, 500
BsnI	GGCC	2 cut(s)	7, 337
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	483
Bsp143I	GATC	3 cut(s)	33, 508, 661
BspACI	CCGC	6 cut(s)	126, 189, 192, 278, 304, 668
BspANI	GGCC	2 cut(s)	7, 337
BspCNI	CTCAG	4 cut(s)	105, 139, 421, 454
BspTI	CTTAAG	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	500
BsrBI	CCGCTC	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	103, 338
BsrI	ACTGG	3 cut(s)	500, 545, 656
BssECI	CCNNGG	2 cut(s)	173, 581
BssMI	GATC	3 cut(s)	33, 508, 661
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	59, 217
BstAFI	CTTAAG	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	241, 388
BstDEI	CTNAG	6 cut(s)	113, 147, 429, 462, 557, 623
BstDSI	CCRYGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	568, 634
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	3 cut(s)	36, 511, 664
BstMAI	GTCTC	2 cut(s)	319, 500
BstMBI	GATC	3 cut(s)	33, 508, 661
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 77, 236, 277, 452, 473
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	2 cut(s)	275, 471
BstSCI	CCNGG	2 cut(s)	156, 172
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	433, 538
BstV2I	GAAGAC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	7, 337
BtgI	CCRYGG	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	568, 634
Cac8I	GCNNGC	2 cut(s)	241, 388
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	154, 516
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	130, 289
CviAII	CATG	2 cut(s)	272, 468
CviQI	GTAC	2 cut(s)	130, 289
DdeI	CTNAG	6 cut(s)	113, 147, 429, 462, 557, 623
DpnI	GATC	3 cut(s)	35, 510, 663
DpnII	GATC	3 cut(s)	33, 508, 661
DraIII	CACNNNGTG	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	2 cut(s)	154, 516
Eco88I	CYCGRG	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	275, 471
FaiI	YATR	5 cut(s)	123, 273, 405, 469, 674
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	2 cut(s)	271, 467
FauI	CCCGC	2 cut(s)	119, 675
Fnu4HI	GCNGC	4 cut(s)	190, 278, 447, 527
FokI	GGATG	2 cut(s)	575, 641
Fsp4HI	GCNGC	4 cut(s)	190, 278, 447, 527
FspBI	CTAG	2 cut(s)	138, 644
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	4 cut(s)	190, 278, 447, 527
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	7, 337
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	275, 471
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HinfI	GANTC	7 cut(s)	29, 44, 178, 412, 421, 594, 640
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	3 cut(s)	38, 205, 206
Hpy166II	GTNNAC	1 cut(s)	653
Hpy188I	TCNGA	1 cut(s)	702
Hpy188III	TCNNGA	6 cut(s)	182, 248, 485, 514, 536, 644
Hpy8I	GTNNAC	1 cut(s)	653
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	254, 328, 401, 626, 697
HpyCH4III	ACNGT	2 cut(s)	59, 217
HpyCH4V	TGCA	3 cut(s)	526, 571, 617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 77, 236, 277, 452, 473
HpyF3I	CTNAG	6 cut(s)	113, 147, 429, 462, 557, 623
Hsp92II	CATG	2 cut(s)	275, 471
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	33, 508, 661
LmnI	GCTCC	2 cut(s)	311, 583
Lsp1109I	GCAGC	2 cut(s)	433, 538
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	2 cut(s)	138, 644
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	35, 510, 663
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	3 cut(s)	33, 508, 661
MboII	GAAGA	3 cut(s)	22, 211, 392
MluCI	AATT	1 cut(s)	504
MlyI	GAGTC	4 cut(s)	53, 187, 588, 649
MseI	TTAA	1 cut(s)	324
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	158, 174
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	6 cut(s)	60, 77, 236, 277, 452, 473
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	3 cut(s)	33, 508, 661
NlaIII	CATG	2 cut(s)	275, 471
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	2 cut(s)	275, 471
PaeR7I	CTCGAG	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	29, 412, 421
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	4 cut(s)	191, 279, 448, 528
PleI	GAGTC	4 cut(s)	52, 186, 588, 648
PpsI	GAGTC	4 cut(s)	52, 186, 588, 648
Psp6I	CCWGG	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	154, 516
RsaI	GTAC	2 cut(s)	131, 290
RsaNI	GTAC	2 cut(s)	130, 289
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	4 cut(s)	190, 278, 447, 527
Sau3AI	GATC	3 cut(s)	33, 508, 661
Sau96I	GGNCC	2 cut(s)	154, 516
SchI	GAGTC	4 cut(s)	53, 187, 588, 649
ScrFI	CCNGG	2 cut(s)	158, 174
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	477
Sfr274I	CTCGAG	1 cut(s)	483
SinI	GGWCC	2 cut(s)	154, 516
SlaI	CTCGAG	1 cut(s)	483
SmlI	CTYRAG	2 cut(s)	323, 483
SmoI	CTYRAG	2 cut(s)	323, 483
Sse9I	AATT	1 cut(s)	504
SsiI	CCGC	6 cut(s)	126, 189, 192, 278, 304, 668
SspMI	CTAG	2 cut(s)	138, 644
StyD4I	CCNGG	2 cut(s)	156, 172
TaaI	ACNGT	2 cut(s)	59, 217
TaqI	TCGA	4 cut(s)	32, 484, 603, 660
TasI	AATT	1 cut(s)	504
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	2 cut(s)	192, 280
TfiI	GAWTC	3 cut(s)	29, 412, 421
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	446, 526
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	393, 456, 645
TspGWI	ACGGA	1 cut(s)	53
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	154, 516
XbaI	TCTAGA	1 cut(s)	643
XceI	RCATGY	2 cut(s)	275, 471
XhoI	CTCGAG	1 cut(s)	483
XspI	CTAG	2 cut(s)	138, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.