Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009088

Physical Location & Seq

Genomic Coordinates Reverse (-)

2228125 .. 2230499

Gene Structure 2375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGGCCGAAGATTTACCTATTTGGTGATTCGATCACGGAGGAGTCGTTCGGCGACGGTGGCTGGGGTGCTTCTCTTGCCCACCATTTCTCTCGCAATGTTGATGTGGTGCTGAGAGGTTATAGCGGGTACAACACTCGGTGGGCTGAGAAGGTTCTGAAGAGGGTTTTTCCGGGGAGTCAAGACAGCGGCGGTGAAGCGCCGTTAGCTGTCACCGTCTTCTTTGGTGCCAATGACGCTTGCCTTCTCGATAGATGCTCTGGTTTTCTGCATGTGCCGGTTGACGAGTACAAGCACAACCTCCGCTCCATTGTCTCCTTCCTCAAGAAGCAATGGCCTGCTACTCGCGTTATTCTCATCACACCTCCTCCTATTGATGAAGAAGGACGCCTTCAATTTCCCTATATTGAGAATCCATTGAATCAGCCTGAGAGGACAAATGAAGCTGCTGGTGCTTTTGCTGAGGCATGTGTTGCTGTAGCTCGAGAAAGTGGTCTCCCGGTGATAGATCTCTGGACCAAAATGCAGCAGGTTCCTGACTGGCAGAAAGCTCATCTAAGGGATGGTTTGCACCTTACTCCTCTGGGAAACAGATTCGTTTTCGAGGAAGTGGTTGCAAAGCTGAGGGACGAAGGATTGAGTCTAGAAAGTTTACCAGTCGATCTCCCGCTTATAGCTGATATTGACCCTAATGACCCTCTGAAGGCTTTTCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

240

Amino Acids

26.66

Weight (kDa)

5.51

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	5 - 204	8e-30	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	7 - 198	1.5e-29	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45920 AT5G45920 AT5G45920 AT5G45920
fragaria_vesca	FvH4_3g04000 FvH4_3g08070 FvH4_3g08070
malus_domestica	MD05G1304500.v1.1
prunus_persica	Prupe.4G058000_v2.0.a1 Prupe.4G058000_v2.0.a1
pyrus_communis	pycom05g28170
rosa_chinensis	RchiOBHm_Chr5g0010151
rosa_laevigata	RLG00000031726
rosa_multiflora	Rmu_sc0000818.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066040
rosa_rugosa	Rorug04G0449300 Rorug04G0449400
rosa_samantha	Rh5AG080300 Rh5BG074800 Rh5CG088600 Rh5DG075700
rosa_wichuraiana	Rw5G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	306
AccII	CGCG	1 cut(s)	348
AciI	CCGC	5 cut(s)	126, 189, 192, 304, 668
AcuI	CTGAAG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	388
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	131, 290
AfiI	CCNNNNNNNGG	1 cut(s)	703
AgsI	TTSAA	2 cut(s)	395, 421
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	6 cut(s)	209, 446, 482, 551, 622, 677
AluI	AGCT	6 cut(s)	209, 446, 482, 551, 622, 677
Alw26I	GTCTC	2 cut(s)	319, 500
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	2 cut(s)	5, 335
ApeKI	GCWGC	2 cut(s)	446, 526
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	516
AsuC2I	CCSGG	2 cut(s)	174, 500
AsuHPI	GGTGA	4 cut(s)	38, 205, 206, 514
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	211
BbvCI	CCTCAGC	2 cut(s)	462, 623
BbvI	GCAGC	2 cut(s)	433, 538
BccI	CCATC	1 cut(s)	557
BceAI	ACGGC	1 cut(s)	187
BcnI	CCSGG	2 cut(s)	174, 500
BcoDI	GTCTC	2 cut(s)	319, 500
BfaI	CTAG	1 cut(s)	644
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	3 cut(s)	190, 447, 527
BlsI	GCNGC	3 cut(s)	191, 448, 528
Bme1390I	CCNGG	2 cut(s)	174, 500
Bme18I	GGWCC	1 cut(s)	516
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	516
BmiI	GGNNCC	2 cut(s)	229, 534
BmrFI	CCNGG	2 cut(s)	174, 500
BmsI	GCATC	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	211
Bpu10I	CCTNAGC	2 cut(s)	462, 623
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	174, 500
BsaHI	GRCGYC	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 62, 290, 320, 352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	703
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	545, 656
Bse3DI	GCAATG	2 cut(s)	103, 338
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	703
BseMI	GCAATG	2 cut(s)	103, 338
BseMII	CTCAG	5 cut(s)	104, 138, 420, 453, 614
BseNI	ACTGG	2 cut(s)	545, 656
BseRI	GAGGAG	3 cut(s)	56, 357, 570
BseXI	GCAGC	2 cut(s)	433, 538
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	7, 337
BshNI	GGYRCC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	3 cut(s)	173, 278, 500
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	703
BsmAI	GTCTC	2 cut(s)	319, 500
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	2 cut(s)	7, 337
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	483
Bsp143I	GATC	3 cut(s)	33, 508, 661
BspACI	CCGC	5 cut(s)	126, 189, 192, 304, 668
BspANI	GGCC	2 cut(s)	7, 337
BspCNI	CTCAG	5 cut(s)	105, 139, 421, 454, 615
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	229, 534
BspMI	ACCTGC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	500
BsrBI	CCGCTC	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	103, 338
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	545, 656
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	3 cut(s)	33, 508, 661
BssNI	GRCGYC	1 cut(s)	388
Bst4CI	ACNGT	2 cut(s)	59, 217
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	388
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	241, 339
BstDEI	CTNAG	6 cut(s)	113, 147, 429, 462, 557, 623
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	36, 511, 664
BstMAI	GTCTC	2 cut(s)	319, 500
BstMBI	GATC	3 cut(s)	33, 508, 661
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 77, 206, 236, 452, 473
BstNSI	RCATGY	2 cut(s)	275, 471
BstSCI	CCNGG	2 cut(s)	172, 498
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	433, 538
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	7, 337
BtsCI	GGATG	1 cut(s)	568
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	241, 339
CfoI	GCGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	516
CseI	GACGC	2 cut(s)	245, 396
Csp6I	GTAC	2 cut(s)	130, 289
CviAII	CATG	2 cut(s)	272, 468
CviQI	GTAC	2 cut(s)	130, 289
DdeI	CTNAG	6 cut(s)	113, 147, 429, 462, 557, 623
DpnI	GATC	3 cut(s)	35, 510, 663
DpnII	GATC	3 cut(s)	33, 508, 661
DraIII	CACNNNGTG	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	483
FaeI	CATG	2 cut(s)	275, 471
FaiI	YATR	5 cut(s)	123, 273, 405, 469, 674
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	2 cut(s)	271, 467
FauI	CCCGC	2 cut(s)	119, 675
Fnu4HI	GCNGC	3 cut(s)	190, 447, 527
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	3 cut(s)	190, 447, 527
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	3 cut(s)	190, 447, 527
GsaI	CCCAGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	7, 337
HapII	CCGG	3 cut(s)	173, 278, 500
HgaI	GACGC	2 cut(s)	245, 396
HhaI	GCGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	275, 471
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	7 cut(s)	29, 44, 178, 412, 421, 594, 640
HpaII	CCGG	3 cut(s)	173, 278, 500
HphI	GGTGA	4 cut(s)	38, 205, 206, 514
Hpy166II	GTNNAC	2 cut(s)	283, 653
Hpy188I	TCNGA	2 cut(s)	159, 702
Hpy188III	TCNNGA	7 cut(s)	182, 248, 325, 485, 514, 536, 644
Hpy8I	GTNNAC	2 cut(s)	283, 653
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	7 cut(s)	145, 254, 328, 377, 401, 626, 697
HpyCH4III	ACNGT	2 cut(s)	59, 217
HpyCH4V	TGCA	4 cut(s)	271, 526, 571, 617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 77, 206, 236, 452, 473
HpyF3I	CTNAG	6 cut(s)	113, 147, 429, 462, 557, 623
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	2 cut(s)	275, 471
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	3 cut(s)	33, 508, 661
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	2 cut(s)	433, 538
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	644
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	35, 510, 663
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	3 cut(s)	33, 508, 661
MboII	GAAGA	4 cut(s)	22, 172, 211, 392
MflI	RGATCY	1 cut(s)	508
MluCI	AATT	1 cut(s)	395
MlyI	GAGTC	3 cut(s)	53, 187, 649
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	3 cut(s)	173, 278, 500
MspR9I	CCNGG	2 cut(s)	174, 500
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	6 cut(s)	60, 77, 206, 236, 452, 473
NciI	CCSGG	2 cut(s)	174, 500
NdeII	GATC	3 cut(s)	33, 508, 661
NlaIII	CATG	2 cut(s)	275, 471
NlaIV	GGNNCC	2 cut(s)	229, 534
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	2 cut(s)	275, 471
PaeR7I	CTCGAG	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	4 cut(s)	29, 412, 421, 594
PkrI	GCNGC	3 cut(s)	191, 448, 528
PleI	GAGTC	3 cut(s)	52, 186, 648
PpsI	GAGTC	3 cut(s)	52, 186, 648
PspFI	CCCAGC	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	229, 534
PspPI	GGNCC	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	2 cut(s)	131, 290
RsaNI	GTAC	2 cut(s)	130, 289
SatI	GCNGC	3 cut(s)	190, 447, 527
Sau3AI	GATC	3 cut(s)	33, 508, 661
Sau96I	GGNCC	1 cut(s)	516
SchI	GAGTC	3 cut(s)	53, 187, 649
ScrFI	CCNGG	2 cut(s)	174, 500
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	477
Sfr274I	CTCGAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	516
SlaI	CTCGAG	1 cut(s)	483
SmlI	CTYRAG	2 cut(s)	323, 483
SmoI	CTYRAG	2 cut(s)	323, 483
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	5 cut(s)	126, 189, 192, 304, 668
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	172, 498
TaaI	ACNGT	2 cut(s)	59, 217
TaqI	TCGA	5 cut(s)	32, 249, 484, 603, 660
TasI	AATT	1 cut(s)	395
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	4 cut(s)	29, 412, 421, 594
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	446, 526
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	393, 456
TspGWI	ACGGA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	516
XbaI	TCTAGA	1 cut(s)	643
XceI	RCATGY	2 cut(s)	275, 471
XhoI	CTCGAG	1 cut(s)	483
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.