Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009088

Physical Location & Seq

Genomic Coordinates Reverse (-)

6296273 .. 6306059

Gene Structure 9787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG074800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAGGCCGAAGATTTACCTTTTTGGTGATTCGATCACGGAGGAGTCCTTCGGCGACGGTGGCTGGGGTGCTTCTCTTGCCCACCAATTCTCTCGCACGGTTGATGTGGTGCTGAGAGGTTATAGCGGGTACAACACTCGGTGGGCTCAGAAGGTTCTGGAGAGGGTTTTTCCGGGGAGTCAAGACGGCGGCGGTGAAGCGCCTTTAGCTGTCACCGTCTTCTTCGGCGCTAATGACGCTTGCCTTCCCGATAGATGCTCTGGTTTTCAGCACGTGCCGGTTGACGAGTTCAAGCAGAACCTCCGCTCCATTGTCTCCTTCCTCAAGAAGCAATGGCCTACTACTCACATTATTCTCATCACACCTCCTCCAATTGATGAAGATGGACGCCTTCAATTTCCCTATATTGAGAATCCATTGAATCAGCCCGAGAGGACAAATGAAGCTGCTGGTGCTTTTGCAGAGGCTTGTGTCGCCGTAGCTCGAGAAAGTGGTCTTCCAGTAATAGATCTCTGGACCAAAATGCAGCAGTTTCCTGACTGGCAGAAAGCTCATCTAAGGGATGGTTTGCACCTTACTCCGCGGGGAAACAGACTCGTTTTTGAGGAAGTGGTTGCGAAGCTGAGGGATGAAGGATTGAGTCTAGAAAGTTTGCCAGTTGATCTCCCACTTATAGCTGATATTGACCCTAATGACCCTCTTAAGGCTTTTCAGAACCCAGAACTATCAGTTGGCGGCAAAAACAGGAATCAGGAAGTTAGAAGTTGGAAGTGGGCACTTCAATTCAGGACACTTATCTCCCCAGCACAAGAAATGGCTTCATTCTGCAGATCAGCGCTTATAGCTGGCTCAAGGTGCATCTCAGCTCGCTCCAGATCCCTCAACCACAGCTCACTAAATGCTATAAGCCCTAAAGTCTTGTCGTCTCCTTTTGCTTCATCAACTAAAGCAAACCCTAGCTCTACTAGGTTCATTTCAGTTCTTGGAAGCGTGGAGTCAATGATGCCATTTCACTGTGCCATTGCTTCTCCTCGGCTCAACTCCACAGTTGCCTTTGATTTCACCTGCTGGAGTTGCCTTTCTCAAGGACTTCTTGATACTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

368

Amino Acids

40.58

Weight (kDa)

6.4

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	5 - 204	9.8e-30	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	7 - 199	5e-30	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45920 AT5G45920 AT5G45920 AT5G45920
fragaria_vesca	FvH4_3g04000 FvH4_3g08070 FvH4_3g08070
malus_domestica	MD05G1304500.v1.1
prunus_persica	Prupe.4G058000_v2.0.a1 Prupe.4G058000_v2.0.a1
pyrus_communis	pycom05g28170
rosa_chinensis	RchiOBHm_Chr5g0010151
rosa_laevigata	RLG00000031726
rosa_multiflora	Rmu_sc0000818.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066040
rosa_rugosa	Rorug04G0449300 Rorug04G0449400
rosa_samantha	Rh5AG080300 Rh5BG074800 Rh5CG088600 Rh5DG075700
rosa_wichuraiana	Rw5G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1073
Acc36I	ACCTGC	1 cut(s)	1073
AccBSI	CCGCTC	1 cut(s)	306
AccII	CGCG	1 cut(s)	583
AciI	CCGC	7 cut(s)	126, 189, 192, 304, 581, 583, 735
AclWI	GGATC	1 cut(s)	870
AcvI	CACGTG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	388
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	131
AfeI	AGCGCT	1 cut(s)	837
AfiI	CCNNNNNNNGG	1 cut(s)	703
AflII	CTTAAG	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	292, 395, 421, 782
AjuI	GAANNNNNNNTTGG	2 cut(s)	714, 746
AloI	GAACNNNNNNTCC	2 cut(s)	290, 322
Alw26I	GTCTC	2 cut(s)	319, 930
AlwI	GGATC	1 cut(s)	870
Ama87I	CYCGRG	2 cut(s)	428, 483
Aor51HI	AGCGCT	1 cut(s)	837
AoxI	GGCC	2 cut(s)	5, 335
ApeKI	GCWGC	2 cut(s)	446, 526
AspLEI	GCGC	3 cut(s)	202, 230, 838
AspS9I	GGNCC	1 cut(s)	516
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	4 cut(s)	38, 205, 206, 1054
AvaI	CYCGRG	2 cut(s)	428, 483
AvaII	GGWCC	1 cut(s)	516
BaeGI	GKGCMC	1 cut(s)	778
BanII	GRGCYC	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	274
BbsI	GAAGAC	2 cut(s)	211, 488
BbvCI	CCTCAGC	1 cut(s)	623
BbvI	GCAGC	2 cut(s)	433, 538
BccI	CCATC	2 cut(s)	377, 557
BceAI	ACGGC	2 cut(s)	202, 461
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	319, 930
BfaI	CTAG	4 cut(s)	644, 957, 966, 1101
BfmI	CTRYAG	1 cut(s)	826
BfoI	RGCGCY	3 cut(s)	203, 231, 839
BfrI	CTTAAG	1 cut(s)	701
BfuAI	ACCTGC	1 cut(s)	1073
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	4 cut(s)	190, 447, 527, 736
BlsI	GCNGC	4 cut(s)	191, 448, 528, 737
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	516
BmeT110I	CYCGRG	2 cut(s)	428, 483
BmgT120I	GGNCC	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	3 cut(s)	245, 867, 993
BpiI	GAAGAC	2 cut(s)	211, 488
BpmI	CTGGAG	3 cut(s)	179, 856, 1090
Bpu10I	CCTNAGC	1 cut(s)	623
BpuEI	CTTGAG	3 cut(s)	308, 835, 1068
BpuMI	CCSGG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	388
BsaJI	CCNNGG	3 cut(s)	173, 581, 1031
BsaXI	ACNNNNNCTCC	4 cut(s)	290, 320, 352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	703
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	3 cut(s)	500, 545, 656
Bse3DI	GCAATG	2 cut(s)	338, 1020
BseDI	CCNNGG	3 cut(s)	173, 581, 1031
BseGI	GGATG	2 cut(s)	568, 634
BseLI	CCNNNNNNNGG	1 cut(s)	703
BseMI	GCAATG	2 cut(s)	338, 1020
BseMII	CTCAG	4 cut(s)	104, 161, 614, 876
BseNI	ACTGG	3 cut(s)	500, 545, 656
BseRI	GAGGAG	3 cut(s)	56, 357, 1020
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	2 cut(s)	433, 538
BseYI	CCCAGC	2 cut(s)	63, 802
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	2 cut(s)	7, 337
BsiHKCI	CYCGRG	2 cut(s)	428, 483
BsiSI	CCGG	2 cut(s)	173, 278
BslI	CCNNNNNNNGG	1 cut(s)	703
BsmAI	GTCTC	2 cut(s)	319, 930
BsmBI	CGTCTC	1 cut(s)	930
BsnI	GGCC	2 cut(s)	7, 337
BsoBI	CYCGRG	2 cut(s)	428, 483
Bsp1286I	GDGCHC	2 cut(s)	148, 778
Bsp143I	GATC	5 cut(s)	33, 508, 661, 830, 875
BspACI	CCGC	7 cut(s)	126, 189, 192, 304, 581, 583, 735
BspANI	GGCC	2 cut(s)	7, 337
BspCNI	CTCAG	4 cut(s)	105, 160, 615, 875
BspFNI	CGCG	1 cut(s)	583
BspMAI	CTGCAG	1 cut(s)	830
BspMI	ACCTGC	1 cut(s)	1073
BspPI	GGATC	1 cut(s)	870
BspTI	CTTAAG	1 cut(s)	701
BsrBI	CCGCTC	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	338, 1020
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	500, 545, 656
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	173, 581, 1031
BssMI	GATC	5 cut(s)	33, 508, 661, 830, 875
BssNI	GRCGYC	1 cut(s)	388
Bst4CI	ACNGT	5 cut(s)	59, 100, 217, 1016, 1048
BstACI	GRCGYC	1 cut(s)	388
BstAFI	CTTAAG	1 cut(s)	701
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	241, 847, 868
BstDEI	CTNAG	5 cut(s)	113, 147, 557, 623, 862
BstDSI	CCRYGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	568, 634
BstFNI	CGCG	1 cut(s)	583
BstH2I	RGCGCY	3 cut(s)	203, 231, 839
BstHHI	GCGC	3 cut(s)	202, 230, 838
BstKTI	GATC	5 cut(s)	36, 511, 664, 833, 878
BstMAI	GTCTC	2 cut(s)	319, 930
BstMBI	GATC	5 cut(s)	33, 508, 661, 830, 875
BstMWI	GCNNNNNNNGC	9 cut(s)	60, 77, 206, 236, 452, 473, 842, 855, 1074
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	826
BstSLI	GKGCMC	1 cut(s)	778
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	433, 538
BstV2I	GAAGAC	2 cut(s)	211, 488
BstX2I	RGATCY	2 cut(s)	508, 875
BstYI	RGATCY	2 cut(s)	508, 875
BsuRI	GGCC	2 cut(s)	7, 337
BtgI	CCRYGG	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	568, 634
BtsIMutI	CAGTG	1 cut(s)	1012
BveI	ACCTGC	1 cut(s)	1073
Cac8I	GCNNGC	3 cut(s)	241, 847, 868
CfoI	GCGC	3 cut(s)	202, 230, 838
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	516
Cfr42I	CCGCGG	1 cut(s)	584
CseI	GACGC	2 cut(s)	245, 396
Csp6I	GTAC	1 cut(s)	130
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	5 cut(s)	113, 147, 557, 623, 862
DpnI	GATC	5 cut(s)	35, 510, 663, 832, 877
DpnII	GATC	5 cut(s)	33, 508, 661, 830, 875
DraIII	CACNNNGTG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	516
Eco47III	AGCGCT	1 cut(s)	837
Eco72I	CACGTG	1 cut(s)	274
Eco88I	CYCGRG	2 cut(s)	428, 483
EcoT38I	GRGCYC	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	930
FaiI	YATR	5 cut(s)	123, 405, 674, 842, 905
FalI	AAGNNNNNCTT	1 cut(s)	1077
FauI	CCCGC	2 cut(s)	119, 576
Fnu4HI	GCNGC	4 cut(s)	190, 447, 527, 736
FokI	GGATG	2 cut(s)	575, 641
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	4 cut(s)	190, 447, 527, 736
FspBI	CTAG	4 cut(s)	644, 957, 966, 1101
GlaI	GCGC	3 cut(s)	201, 229, 837
GluI	GCNGC	4 cut(s)	190, 447, 527, 736
GsaI	CCCAGC	2 cut(s)	67, 806
GsuI	CTGGAG	3 cut(s)	179, 856, 1090
HaeII	RGCGCY	3 cut(s)	203, 231, 839
HaeIII	GGCC	2 cut(s)	7, 337
HapII	CCGG	2 cut(s)	173, 278
HgaI	GACGC	2 cut(s)	245, 396
HhaI	GCGC	3 cut(s)	202, 230, 838
Hin1I	GRCGYC	1 cut(s)	388
Hin6I	GCGC	3 cut(s)	200, 228, 836
HinP1I	GCGC	3 cut(s)	200, 228, 836
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	9 cut(s)	29, 44, 178, 412, 421, 594, 640, 748, 995
HpaII	CCGG	2 cut(s)	173, 278
HphI	GGTGA	4 cut(s)	38, 205, 206, 1054
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	150, 714
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	6 cut(s)	58, 145, 254, 328, 401, 626
HpyCH4III	ACNGT	5 cut(s)	59, 100, 217, 1016, 1048
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	461, 526, 571, 828, 858
HpyF10VI	GCNNNNNNNGC	9 cut(s)	60, 77, 206, 236, 452, 473, 842, 855, 1074
HpyF3I	CTNAG	5 cut(s)	113, 147, 557, 623, 862
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	388
HspAI	GCGC	3 cut(s)	200, 228, 836
KspI	CCGCGG	1 cut(s)	584
Kzo9I	GATC	5 cut(s)	33, 508, 661, 830, 875
LmnI	GCTCC	2 cut(s)	311, 875
Lsp1109I	GCAGC	2 cut(s)	433, 538
LweI	GCATC	3 cut(s)	245, 867, 993
MaeI	CTAG	4 cut(s)	644, 957, 966, 1101
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	5 cut(s)	35, 510, 663, 832, 877
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	5 cut(s)	33, 508, 661, 830, 875
MboII	GAAGA	5 cut(s)	22, 211, 214, 392, 488
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	2 cut(s)	508, 875
MhlI	GDGCHC	2 cut(s)	148, 778
MluCI	AATT	4 cut(s)	86, 372, 395, 782
MlyI	GAGTC	5 cut(s)	53, 187, 588, 649, 1004
MmeI	TCCRAC	1 cut(s)	746
MseI	TTAA	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	583
MspCI	CTTAAG	1 cut(s)	701
MspI	CCGG	2 cut(s)	173, 278
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	9 cut(s)	60, 77, 206, 236, 452, 473, 842, 855, 1074
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	5 cut(s)	33, 508, 661, 830, 875
NmeAIII	GCCGAG	1 cut(s)	1012
NmuCI	GTSAC	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	483
PaqCI	CACCTGC	1 cut(s)	1073
PfeI	GAWTC	4 cut(s)	29, 412, 421, 748
PkrI	GCNGC	4 cut(s)	191, 448, 528, 737
PleI	GAGTC	5 cut(s)	52, 186, 588, 648, 1003
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
PpsI	GAGTC	5 cut(s)	52, 186, 588, 648, 1003
Ppu21I	YACGTR	1 cut(s)	274
PspCI	CACGTG	1 cut(s)	274
PspFI	CCCAGC	2 cut(s)	63, 802
PspPI	GGNCC	1 cut(s)	516
PstI	CTGCAG	1 cut(s)	830
PsuI	RGATCY	2 cut(s)	508, 875
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SacII	CCGCGG	1 cut(s)	584
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	4 cut(s)	190, 447, 527, 736
Sau3AI	GATC	5 cut(s)	33, 508, 661, 830, 875
Sau96I	GGNCC	1 cut(s)	516
SchI	GAGTC	5 cut(s)	53, 187, 588, 649, 1004
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	2 cut(s)	148, 778
SfaNI	GCATC	3 cut(s)	245, 867, 993
SfcI	CTRYAG	1 cut(s)	826
Sfr274I	CTCGAG	1 cut(s)	483
Sfr303I	CCGCGG	1 cut(s)	584
SgrBI	CCGCGG	1 cut(s)	584
SinI	GGWCC	1 cut(s)	516
SlaI	CTCGAG	1 cut(s)	483
SmlI	CTYRAG	5 cut(s)	323, 483, 701, 850, 1083
SmoI	CTYRAG	5 cut(s)	323, 483, 701, 850, 1083
Sse9I	AATT	4 cut(s)	86, 372, 395, 782
SsiI	CCGC	7 cut(s)	126, 189, 192, 304, 581, 583, 735
SspMI	CTAG	4 cut(s)	644, 957, 966, 1101
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	5 cut(s)	59, 100, 217, 1016, 1048
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	32, 484
TasI	AATT	4 cut(s)	86, 372, 395, 782
TauI	GCSGC	2 cut(s)	192, 738
TfiI	GAWTC	4 cut(s)	29, 412, 421, 748
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	1 cut(s)	1019
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	446, 526
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	6 cut(s)	393, 456, 645, 810, 927, 961
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	1019
Vha464I	CTTAAG	1 cut(s)	701
VpaK11BI	GGWCC	1 cut(s)	516
XbaI	TCTAGA	1 cut(s)	643
XhoI	CTCGAG	1 cut(s)	483
XspI	CTAG	4 cut(s)	644, 957, 966, 1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.