Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009088

Physical Location & Seq

Genomic Coordinates Forward (+)

43663311 .. 43666869

Gene Structure 3559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1304500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGGCCAAAGATTTACCTTTTCGGCGACTCCATCACCGAGGAGTCCTTCGGCGACGGCGGCTGGGGGGCCTCTCTCGCCCACCACTTTTCCCGCACGGTGGACGTGGTGCTGAGAGGGTACAGTGGGTACAACACCAGGTGGCCCTTGAAAGTTTTGGAGAGGGTGTTTCCAGGTGGCGGTGTAGAAGGAGGTGAGGAGGAGCCGCCGCTTGCTGTCACCATTTTCTTTGGCGCGAATGACGCTTGCCTTCCCGACAGATGCTCTGCTTTTCAACACGTGCCTCTCGACGAGTACAAGCAGAATCTCCTCTCGATCGTCTCATTTCTCAAGAAGCGATGGCCTTCAACTCACATTCTCCTTATCACCCCTCCTCCAATCGATGAAGATGGGCGCCTCCGATTTCCCTATATTGATAATCCATTGAATCAGCCTGAGAGGACAAATAAAGCTGCTGGGGCTTATTCAGAAGCATGTATTTCTGTAGCTCGAGAAAGTGGGATCCCGGTAATAGATCTCTGGACCAAAATGCAGCAGTTTCCTGACTGGGAAAAAGCTTTCCTGAGGGACGGTTTGCACCTCTGCCCGCGGGGCAACAGGGTTGTGTTTGACGAGGTGGTCCTAAAGCTGAAGGGTGAAGGCTTGAGTCTAGAAACATTGCCAGTAGATCTCCCGCTTATAGCAGACATCGACACTAAAGACCCTCTTAAGGCTTTCCAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

242

Amino Acids

26.98

Weight (kDa)

5.3

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	5 - 206	9.1e-27	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	7 - 200	3.4e-27	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45920 AT5G45920 AT5G45920 AT5G45920
fragaria_vesca	FvH4_3g04000 FvH4_3g08070 FvH4_3g08070
malus_domestica	MD05G1304500.v1.1
prunus_persica	Prupe.4G058000_v2.0.a1 Prupe.4G058000_v2.0.a1
pyrus_communis	pycom05g28170
rosa_chinensis	RchiOBHm_Chr5g0010151
rosa_laevigata	RLG00000031726
rosa_multiflora	Rmu_sc0000818.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066040
rosa_rugosa	Rorug04G0449300 Rorug04G0449400
rosa_samantha	Rh5AG080300 Rh5BG074800 Rh5CG088600 Rh5DG075700
rosa_wichuraiana	Rw5G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	393
AccII	CGCG	2 cut(s)	236, 589
AciI	CCGC	8 cut(s)	60, 94, 180, 206, 209, 587, 589, 674
AclWI	GGATC	2 cut(s)	496, 509
AcuI	CTGAAG	1 cut(s)	650
AcvI	CACGTG	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	394
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	3 cut(s)	122, 131, 296
AfiI	CCNNNNNNNGG	3 cut(s)	100, 179, 709
AflII	CTTAAG	1 cut(s)	707
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	4 cut(s)	151, 275, 348, 427
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	2 cut(s)	137, 172
AluBI	AGCT	4 cut(s)	452, 488, 557, 628
AluI	AGCT	4 cut(s)	452, 488, 557, 628
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	496, 509
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	4 cut(s)	5, 69, 143, 341
ApeKI	GCWGC	2 cut(s)	452, 532
AspLEI	GCGC	2 cut(s)	236, 396
AspS9I	GGNCC	4 cut(s)	69, 144, 522, 619
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	5 cut(s)	28, 206, 211, 358, 647
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	2 cut(s)	522, 619
AxyI	CCTNAGG	1 cut(s)	563
BamHI	GGATCC	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	393
BbrPI	CACGTG	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	439, 544
BccI	CCATC	3 cut(s)	41, 333, 383
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	139, 174
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	397
BfrI	CTTAAG	1 cut(s)	707
BglI	GCCNNNNNGGC	1 cut(s)	591
BglII	AGATCT	2 cut(s)	514, 667
BisI	GCNGC	5 cut(s)	61, 206, 209, 453, 533
BlsI	GCNGC	5 cut(s)	62, 207, 210, 454, 534
Bme1390I	CCNGG	3 cut(s)	139, 174, 506
Bme18I	GGWCC	2 cut(s)	522, 619
BmeT110I	CYCGRG	1 cut(s)	489
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	4 cut(s)	69, 144, 522, 619
BmiI	GGNNCC	4 cut(s)	70, 204, 395, 503
BmrFI	CCNGG	3 cut(s)	139, 174, 506
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	1 cut(s)	251
BmuI	ACTGGG	1 cut(s)	556
BpuEI	CTTGAG	2 cut(s)	314, 664
BpuMI	CCSGG	1 cut(s)	506
Bsa29I	ATCGAT	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	394
BsaJI	CCNNGG	2 cut(s)	39, 587
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 358, 388
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 179, 709
Bse1I	ACTGG	2 cut(s)	551, 662
Bse21I	CCTNAGG	1 cut(s)	563
Bse3DI	GCAATG	1 cut(s)	656
BseBI	CCWGG	2 cut(s)	139, 174
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	39, 587
BseLI	CCNNNNNNNGG	3 cut(s)	100, 179, 709
BseMI	GCAATG	1 cut(s)	656
BseMII	CTCAG	3 cut(s)	104, 426, 554
BseNI	ACTGG	2 cut(s)	551, 662
BseRI	GAGGAG	5 cut(s)	56, 212, 215, 299, 363
BseXI	GCAGC	2 cut(s)	439, 544
BseYI	CCCAGC	2 cut(s)	63, 455
Bsh1236I	CGCG	2 cut(s)	236, 589
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	4 cut(s)	7, 71, 145, 343
BshNI	GGYRCC	1 cut(s)	393
BshVI	ATCGAT	1 cut(s)	381
BsiEI	CGRYCG	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	506
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	3 cut(s)	100, 179, 709
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	581
BsnI	GGCC	4 cut(s)	7, 71, 145, 343
BsoBI	CYCGRG	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	315, 501, 514, 667
BspACI	CCGC	8 cut(s)	60, 94, 180, 206, 209, 587, 589, 674
BspANI	GGCC	4 cut(s)	7, 71, 145, 343
BspCNI	CTCAG	3 cut(s)	105, 427, 555
BspDI	ATCGAT	1 cut(s)	381
BspFNI	CGCG	2 cut(s)	236, 589
BspLI	GGNNCC	4 cut(s)	70, 204, 395, 503
BspPI	GGATC	2 cut(s)	496, 509
BspT107I	GGYRCC	1 cut(s)	393
BspTI	CTTAAG	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	551, 662
BssECI	CCNNGG	2 cut(s)	39, 587
BssMI	GATC	4 cut(s)	315, 501, 514, 667
BssNI	GRCGYC	1 cut(s)	394
Bst2UI	CCWGG	2 cut(s)	139, 174
Bst4CI	ACNGT	3 cut(s)	100, 125, 572
BstACI	GRCGYC	1 cut(s)	394
BstAFI	CTTAAG	1 cut(s)	707
BstBAI	YACGTR	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	213, 247, 587
BstDEI	CTNAG	3 cut(s)	113, 435, 563
BstDSI	CCRYGG	1 cut(s)	587
BstFNI	CGCG	2 cut(s)	236, 589
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	2 cut(s)	236, 396
BstKTI	GATC	4 cut(s)	318, 504, 517, 670
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	315, 501, 514, 667
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 77, 242, 458, 591
BstNI	CCWGG	2 cut(s)	139, 174
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	3 cut(s)	137, 172, 504
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	2 cut(s)	236, 589
BstV1I	GCAGC	2 cut(s)	439, 544
BstX2I	RGATCY	3 cut(s)	501, 514, 667
BstYI	RGATCY	3 cut(s)	501, 514, 667
Bsu15I	ATCGAT	1 cut(s)	381
Bsu36I	CCTNAGG	1 cut(s)	563
BsuRI	GGCC	4 cut(s)	7, 71, 145, 343
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	587
BtgZI	GCGATG	1 cut(s)	352
BtrI	CACGTC	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	3 cut(s)	213, 247, 587
CfoI	GCGC	2 cut(s)	236, 396
Cfr13I	GGNCC	4 cut(s)	69, 144, 522, 619
Cfr42I	CCGCGG	1 cut(s)	590
ClaI	ATCGAT	1 cut(s)	381
CseI	GACGC	1 cut(s)	251
CsiI	ACCWGGT	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	121, 130, 295
CviAII	CATG	1 cut(s)	474
CviQI	GTAC	3 cut(s)	121, 130, 295
DdeI	CTNAG	3 cut(s)	113, 435, 563
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	4 cut(s)	317, 503, 516, 669
DpnII	GATC	4 cut(s)	315, 501, 514, 667
DraIII	CACNNNGTG	1 cut(s)	141
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
Eco47I	GGWCC	2 cut(s)	522, 619
Eco57I	CTGAAG	1 cut(s)	650
Eco72I	CACGTG	1 cut(s)	280
Eco81I	CCTNAGG	1 cut(s)	563
Eco88I	CYCGRG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	137, 172
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	1 cut(s)	477
FaiI	YATR	3 cut(s)	411, 475, 680
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	1 cut(s)	473
FauI	CCCGC	4 cut(s)	101, 582, 594, 681
Fnu4HI	GCNGC	5 cut(s)	61, 206, 209, 453, 533
Fsp4HI	GCNGC	5 cut(s)	61, 206, 209, 453, 533
FspBI	CTAG	1 cut(s)	650
GlaI	GCGC	2 cut(s)	235, 395
GluI	GCNGC	5 cut(s)	61, 206, 209, 453, 533
GsaI	CCCAGC	2 cut(s)	67, 459
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	4 cut(s)	7, 71, 145, 343
HapII	CCGG	1 cut(s)	506
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	236, 396
Hin1I	GRCGYC	1 cut(s)	394
Hin1II	CATG	1 cut(s)	477
Hin6I	GCGC	2 cut(s)	234, 394
HinP1I	GCGC	2 cut(s)	234, 394
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	5 cut(s)	29, 44, 304, 427, 646
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	5 cut(s)	28, 206, 211, 358, 647
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	401, 469
Hpy188III	TCNNGA	9 cut(s)	254, 287, 313, 331, 491, 520, 542, 562, 650
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	2 cut(s)	59, 293
HpyAV	CCTTC	6 cut(s)	58, 182, 260, 354, 625, 632
HpyCH4III	ACNGT	3 cut(s)	100, 125, 572
HpyCH4IV	ACGT	2 cut(s)	105, 279
HpyCH4V	TGCA	2 cut(s)	532, 577
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 77, 242, 458, 591
HpyF3I	CTNAG	3 cut(s)	113, 435, 563
HpySE526I	ACGT	2 cut(s)	105, 279
Hsp92I	GRCGYC	1 cut(s)	394
Hsp92II	CATG	1 cut(s)	477
HspAI	GCGC	2 cut(s)	234, 394
KasI	GGCGCC	1 cut(s)	393
KspI	CCGCGG	1 cut(s)	590
Kzo9I	GATC	4 cut(s)	315, 501, 514, 667
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	2 cut(s)	439, 544
LweI	GCATC	1 cut(s)	251
MabI	ACCWGGT	1 cut(s)	137
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	2 cut(s)	105, 279
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	4 cut(s)	317, 503, 516, 669
MboI	GATC	4 cut(s)	315, 501, 514, 667
MboII	GAAGA	1 cut(s)	398
MflI	RGATCY	3 cut(s)	501, 514, 667
Mly113I	GGCGCC	1 cut(s)	394
MlyI	GAGTC	3 cut(s)	23, 53, 655
MseI	TTAA	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	589
MspCI	CTTAAG	1 cut(s)	707
MspI	CCGG	1 cut(s)	506
MspR9I	CCNGG	3 cut(s)	139, 174, 506
MvaI	CCWGG	2 cut(s)	139, 174
MvnI	CGCG	2 cut(s)	236, 589
MwoI	GCNNNNNNNGC	5 cut(s)	60, 77, 242, 458, 591
NarI	GGCGCC	1 cut(s)	394
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	4 cut(s)	315, 501, 514, 667
NlaIII	CATG	1 cut(s)	477
NlaIV	GGNNCC	4 cut(s)	70, 204, 395, 503
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	304, 427
PkrI	GCNGC	5 cut(s)	62, 207, 210, 454, 534
Ple19I	CGATCG	1 cut(s)	318
PleI	GAGTC	3 cut(s)	23, 52, 654
PluTI	GGCGCC	1 cut(s)	397
PmaCI	CACGTG	1 cut(s)	280
PmlI	CACGTG	1 cut(s)	280
PpsI	GAGTC	3 cut(s)	23, 52, 654
Ppu21I	YACGTR	1 cut(s)	280
Psp6I	CCWGG	2 cut(s)	137, 172
PspCI	CACGTG	1 cut(s)	280
PspFI	CCCAGC	2 cut(s)	63, 455
PspGI	CCWGG	2 cut(s)	137, 172
PspN4I	GGNNCC	4 cut(s)	70, 204, 395, 503
PspPI	GGNCC	4 cut(s)	69, 144, 522, 619
PsuI	RGATCY	3 cut(s)	501, 514, 667
PvuI	CGATCG	1 cut(s)	318
RsaI	GTAC	3 cut(s)	122, 131, 296
RsaNI	GTAC	3 cut(s)	121, 130, 295
SacII	CCGCGG	1 cut(s)	590
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	5 cut(s)	61, 206, 209, 453, 533
Sau3AI	GATC	4 cut(s)	315, 501, 514, 667
Sau96I	GGNCC	4 cut(s)	69, 144, 522, 619
SchI	GAGTC	3 cut(s)	23, 53, 655
ScrFI	CCNGG	3 cut(s)	139, 174, 506
SexAI	ACCWGGT	1 cut(s)	137
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	483
SfoI	GGCGCC	1 cut(s)	395
Sfr274I	CTCGAG	1 cut(s)	489
Sfr303I	CCGCGG	1 cut(s)	590
SgrBI	CCGCGG	1 cut(s)	590
SinI	GGWCC	2 cut(s)	522, 619
SlaI	CTCGAG	1 cut(s)	489
SmlI	CTYRAG	4 cut(s)	329, 489, 643, 707
SmoI	CTYRAG	4 cut(s)	329, 489, 643, 707
SsiI	CCGC	8 cut(s)	60, 94, 180, 206, 209, 587, 589, 674
SspDI	GGCGCC	1 cut(s)	393
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	3 cut(s)	137, 172, 504
TaaI	ACNGT	3 cut(s)	100, 125, 572
TaiI	ACGT	2 cut(s)	108, 282
TaqI	TCGA	5 cut(s)	288, 314, 381, 490, 690
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	3 cut(s)	63, 208, 211
TfiI	GAWTC	2 cut(s)	304, 427
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	452, 532
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	707
VpaK11BI	GGWCC	2 cut(s)	522, 619
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	1 cut(s)	477
XhoI	CTCGAG	1 cut(s)	489
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.