Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009088

Physical Location & Seq

Genomic Coordinates Forward (+)

28966366 .. 28969457

Gene Structure 3092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGGCCAAAGATTTACCTTTTCGGCGACTCCATCAGCGAGGAGTCCTTCGGAGACGGCGGCTGGGGGGCCTCTCTCGCCCACCACTTTTCCCGCACGGTGGACGTGGTGCTGAGAGGGTACAGTGGATACAACACCAGGTGGGCCTTGAAAGTTTTGGAGAGGGTGTTTCCGGGTGGCGGTGTTGAAGGAGGTGAGGAGGAGCCGCCGCTTGCTATCACCGTTTTCTTTGGCGCGAATGACGCTTGCCTTCCCGACAGATGCTCTGCTTTTCAACACGTGCCTCTCGACGAGTACAAGCAGAATCTCCTCTCGATTGTCTCATTTCTCAAGAAGCGATGGCCTTCAACTCACATTCTCCTTATCACCCCTCCTCCAATCGATGAAGATGGGCGCCTCCGATTTCCCTATATTGATAATCCATTGAATCAGCCTGAGAGGACAAATAAAGCTGCTGGGGCTTATTCAGAAGCATGTATTTCTGTAGCTCGAGAAAGTGGGATCCCGGTAATAGATCTCTGGACCAAAATGCAGCAGTTTCCTGACTGGGAAAAAGCTTTCCTGAGGGACGGTTTGCACCTCAGCCCCCGGGGCAACAGGGTTGTGTTTGACGAGGTGGTCCTAAAGCTGAAGGATGAAGGCTTGAGTCTAGAAACATTGCCAGTTGATCTCCCGCTTATAGAGGACATCGACACTAAAGACCCTCTTAAGGCTTTCCAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

242

Amino Acids

27.02

Weight (kDa)

5.1

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45920 AT5G45920 AT5G45920 AT5G45920
fragaria_vesca	FvH4_3g04000 FvH4_3g08070 FvH4_3g08070
malus_domestica	MD05G1304500.v1.1
prunus_persica	Prupe.4G058000_v2.0.a1 Prupe.4G058000_v2.0.a1
pyrus_communis	pycom05g28170
rosa_chinensis	RchiOBHm_Chr5g0010151
rosa_laevigata	RLG00000031726
rosa_multiflora	Rmu_sc0000818.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066040
rosa_rugosa	Rorug04G0449300 Rorug04G0449400
rosa_samantha	Rh5AG080300 Rh5BG074800 Rh5CG088600 Rh5DG075700
rosa_wichuraiana	Rw5G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	393
AccII	CGCG	1 cut(s)	236
AciI	CCGC	6 cut(s)	60, 94, 180, 206, 209, 674
AclWI	GGATC	2 cut(s)	496, 509
AcsI	RAATTY	1 cut(s)	720
AcuI	CTGAAG	1 cut(s)	650
AcvI	CACGTG	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	394
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	122, 296
AfiI	CCNNNNNNNGG	3 cut(s)	100, 179, 709
AflII	CTTAAG	1 cut(s)	707
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	5 cut(s)	151, 188, 275, 348, 427
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	4 cut(s)	452, 488, 557, 628
AluI	AGCT	4 cut(s)	452, 488, 557, 628
Alw26I	GTCTC	2 cut(s)	48, 325
AlwI	GGATC	2 cut(s)	496, 509
Ama87I	CYCGRG	2 cut(s)	489, 588
AoxI	GGCC	4 cut(s)	5, 69, 144, 341
ApeKI	GCWGC	2 cut(s)	452, 532
ApoI	RAATTY	1 cut(s)	720
AspLEI	GCGC	2 cut(s)	236, 396
AspS9I	GGNCC	4 cut(s)	69, 144, 522, 619
AsuC2I	CCSGG	4 cut(s)	174, 506, 589, 590
AsuHPI	GGTGA	3 cut(s)	206, 211, 358
AvaI	CYCGRG	2 cut(s)	489, 588
AvaII	GGWCC	2 cut(s)	522, 619
AxyI	CCTNAGG	1 cut(s)	563
BamHI	GGATCC	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	393
BbrPI	CACGTG	1 cut(s)	280
BbvCI	CCTCAGC	1 cut(s)	581
BbvI	GCAGC	2 cut(s)	439, 544
BccI	CCATC	3 cut(s)	41, 333, 383
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	139
BciVI	GTATCC	1 cut(s)	122
BcnI	CCSGG	4 cut(s)	174, 506, 589, 590
BcoDI	GTCTC	2 cut(s)	48, 325
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	397
BfrI	CTTAAG	1 cut(s)	707
BfuI	GTATCC	1 cut(s)	122
BglI	GCCNNNNNGGC	1 cut(s)	591
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	5 cut(s)	61, 206, 209, 453, 533
BlsI	GCNGC	5 cut(s)	62, 207, 210, 454, 534
Bme1390I	CCNGG	5 cut(s)	139, 174, 506, 589, 590
Bme18I	GGWCC	2 cut(s)	522, 619
BmeT110I	CYCGRG	2 cut(s)	489, 588
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	4 cut(s)	69, 144, 522, 619
BmiI	GGNNCC	4 cut(s)	70, 204, 395, 503
BmrFI	CCNGG	5 cut(s)	139, 174, 506, 589, 590
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	1 cut(s)	251
BmuI	ACTGGG	1 cut(s)	556
Bpu10I	CCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	2 cut(s)	314, 664
BpuMI	CCSGG	4 cut(s)	174, 506, 589, 590
Bsa29I	ATCGAT	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	394
BsaJI	CCNNGG	3 cut(s)	587, 588, 589
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 358, 388
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 179, 709
Bse1I	ACTGG	2 cut(s)	551, 662
Bse21I	CCTNAGG	1 cut(s)	563
Bse3DI	GCAATG	1 cut(s)	656
BseBI	CCWGG	1 cut(s)	139
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	587, 588, 589
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	3 cut(s)	100, 179, 709
BseMI	GCAATG	1 cut(s)	656
BseMII	CTCAG	4 cut(s)	104, 426, 554, 595
BseNI	ACTGG	2 cut(s)	551, 662
BseRI	GAGGAG	5 cut(s)	56, 212, 215, 299, 363
BseXI	GCAGC	2 cut(s)	439, 544
BseYI	CCCAGC	2 cut(s)	63, 455
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	4 cut(s)	7, 71, 146, 343
BshNI	GGYRCC	1 cut(s)	393
BshVI	ATCGAT	1 cut(s)	381
BsiHKCI	CYCGRG	2 cut(s)	489, 588
BsiSI	CCGG	3 cut(s)	173, 506, 589
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	3 cut(s)	100, 179, 709
BsmAI	GTCTC	2 cut(s)	48, 325
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	581
BsnI	GGCC	4 cut(s)	7, 71, 146, 343
BsoBI	CYCGRG	2 cut(s)	489, 588
Bsp143I	GATC	3 cut(s)	501, 514, 667
BspACI	CCGC	6 cut(s)	60, 94, 180, 206, 209, 674
BspANI	GGCC	4 cut(s)	7, 71, 146, 343
BspCNI	CTCAG	4 cut(s)	105, 427, 555, 594
BspDI	ATCGAT	1 cut(s)	381
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	4 cut(s)	70, 204, 395, 503
BspPI	GGATC	2 cut(s)	496, 509
BspT107I	GGYRCC	1 cut(s)	393
BspTI	CTTAAG	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	551, 662
BssECI	CCNNGG	3 cut(s)	587, 588, 589
BssMI	GATC	3 cut(s)	501, 514, 667
BssNI	GRCGYC	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	4 cut(s)	100, 125, 223, 572
BstACI	GRCGYC	1 cut(s)	394
BstAFI	CTTAAG	1 cut(s)	707
BstBAI	YACGTR	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	213, 247
BstDEI	CTNAG	4 cut(s)	113, 435, 563, 581
BstF5I	GGATG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	2 cut(s)	236, 396
BstKTI	GATC	3 cut(s)	504, 517, 670
BstMAI	GTCTC	2 cut(s)	48, 325
BstMBI	GATC	3 cut(s)	501, 514, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 242, 458, 591
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	5 cut(s)	137, 172, 504, 587, 588
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	439, 544
BstX2I	RGATCY	2 cut(s)	501, 514
BstYI	RGATCY	2 cut(s)	501, 514
Bsu15I	ATCGAT	1 cut(s)	381
Bsu36I	CCTNAGG	1 cut(s)	563
BsuI	GTATCC	1 cut(s)	122
BsuRI	GGCC	4 cut(s)	7, 71, 146, 343
BsuTUI	ATCGAT	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	352
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	213, 247
CfoI	GCGC	2 cut(s)	236, 396
Cfr13I	GGNCC	4 cut(s)	69, 144, 522, 619
Cfr9I	CCCGGG	1 cut(s)	588
ClaI	ATCGAT	1 cut(s)	381
CseI	GACGC	1 cut(s)	251
CsiI	ACCWGGT	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	121, 295
CviAII	CATG	1 cut(s)	474
CviQI	GTAC	2 cut(s)	121, 295
DdeI	CTNAG	4 cut(s)	113, 435, 563, 581
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	3 cut(s)	503, 516, 669
DpnII	GATC	3 cut(s)	501, 514, 667
DraIII	CACNNNGTG	1 cut(s)	141
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
Eco47I	GGWCC	2 cut(s)	522, 619
Eco57I	CTGAAG	1 cut(s)	650
Eco72I	CACGTG	1 cut(s)	280
Eco81I	CCTNAGG	1 cut(s)	563
Eco88I	CYCGRG	2 cut(s)	489, 588
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	137
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	1 cut(s)	477
FaiI	YATR	3 cut(s)	411, 475, 680
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	1 cut(s)	473
FauI	CCCGC	2 cut(s)	101, 681
Fnu4HI	GCNGC	5 cut(s)	61, 206, 209, 453, 533
FokI	GGATG	1 cut(s)	647
Fsp4HI	GCNGC	5 cut(s)	61, 206, 209, 453, 533
FspBI	CTAG	1 cut(s)	650
GlaI	GCGC	2 cut(s)	235, 395
GluI	GCNGC	5 cut(s)	61, 206, 209, 453, 533
GsaI	CCCAGC	2 cut(s)	67, 459
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	4 cut(s)	7, 71, 146, 343
HapII	CCGG	3 cut(s)	173, 506, 589
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	236, 396
Hin1I	GRCGYC	1 cut(s)	394
Hin1II	CATG	1 cut(s)	477
Hin6I	GCGC	2 cut(s)	234, 394
HinP1I	GCGC	2 cut(s)	234, 394
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	5 cut(s)	29, 44, 304, 427, 646
HpaII	CCGG	3 cut(s)	173, 506, 589
HphI	GGTGA	3 cut(s)	206, 211, 358
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	53, 401, 469
Hpy188III	TCNNGA	9 cut(s)	254, 287, 313, 331, 491, 520, 542, 562, 650
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	6 cut(s)	58, 182, 260, 354, 625, 632
HpyCH4III	ACNGT	4 cut(s)	100, 125, 223, 572
HpyCH4IV	ACGT	2 cut(s)	105, 279
HpyCH4V	TGCA	2 cut(s)	532, 577
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 242, 458, 591
HpyF3I	CTNAG	4 cut(s)	113, 435, 563, 581
HpySE526I	ACGT	2 cut(s)	105, 279
Hsp92I	GRCGYC	1 cut(s)	394
Hsp92II	CATG	1 cut(s)	477
HspAI	GCGC	2 cut(s)	234, 394
KasI	GGCGCC	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	501, 514, 667
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	2 cut(s)	439, 544
LweI	GCATC	1 cut(s)	251
MabI	ACCWGGT	1 cut(s)	137
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	2 cut(s)	105, 279
MalI	GATC	3 cut(s)	503, 516, 669
MboI	GATC	3 cut(s)	501, 514, 667
MboII	GAAGA	1 cut(s)	398
MflI	RGATCY	2 cut(s)	501, 514
MluCI	AATT	1 cut(s)	720
Mly113I	GGCGCC	1 cut(s)	394
MlyI	GAGTC	3 cut(s)	23, 53, 655
MseI	TTAA	1 cut(s)	708
MspCI	CTTAAG	1 cut(s)	707
MspI	CCGG	3 cut(s)	173, 506, 589
MspR9I	CCNGG	5 cut(s)	139, 174, 506, 589, 590
MvaI	CCWGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	4 cut(s)	77, 242, 458, 591
NarI	GGCGCC	1 cut(s)	394
NciI	CCSGG	4 cut(s)	174, 506, 589, 590
NdeII	GATC	3 cut(s)	501, 514, 667
NlaIII	CATG	1 cut(s)	477
NlaIV	GGNNCC	4 cut(s)	70, 204, 395, 503
NspI	RCATGY	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	304, 427
PkrI	GCNGC	5 cut(s)	62, 207, 210, 454, 534
PleI	GAGTC	3 cut(s)	23, 52, 654
PluTI	GGCGCC	1 cut(s)	397
PmaCI	CACGTG	1 cut(s)	280
PmlI	CACGTG	1 cut(s)	280
PpsI	GAGTC	3 cut(s)	23, 52, 654
Ppu21I	YACGTR	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	137
PspCI	CACGTG	1 cut(s)	280
PspFI	CCCAGC	2 cut(s)	63, 455
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	4 cut(s)	70, 204, 395, 503
PspPI	GGNCC	4 cut(s)	69, 144, 522, 619
PsuI	RGATCY	2 cut(s)	501, 514
RsaI	GTAC	2 cut(s)	122, 296
RsaNI	GTAC	2 cut(s)	121, 295
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	5 cut(s)	61, 206, 209, 453, 533
Sau3AI	GATC	3 cut(s)	501, 514, 667
Sau96I	GGNCC	4 cut(s)	69, 144, 522, 619
SchI	GAGTC	3 cut(s)	23, 53, 655
ScrFI	CCNGG	5 cut(s)	139, 174, 506, 589, 590
SexAI	ACCWGGT	1 cut(s)	137
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	483
SfoI	GGCGCC	1 cut(s)	395
Sfr274I	CTCGAG	1 cut(s)	489
SinI	GGWCC	2 cut(s)	522, 619
SlaI	CTCGAG	1 cut(s)	489
SmaI	CCCGGG	1 cut(s)	590
SmlI	CTYRAG	4 cut(s)	329, 489, 643, 707
SmoI	CTYRAG	4 cut(s)	329, 489, 643, 707
Sse9I	AATT	1 cut(s)	720
SsiI	CCGC	6 cut(s)	60, 94, 180, 206, 209, 674
SspDI	GGCGCC	1 cut(s)	393
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	5 cut(s)	137, 172, 504, 587, 588
TaaI	ACNGT	4 cut(s)	100, 125, 223, 572
TaiI	ACGT	2 cut(s)	108, 282
TaqI	TCGA	5 cut(s)	288, 314, 381, 490, 690
TasI	AATT	1 cut(s)	720
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	3 cut(s)	63, 208, 211
TfiI	GAWTC	2 cut(s)	304, 427
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	2 cut(s)	452, 532
TspDTI	ATGAA	2 cut(s)	399, 651
TspMI	CCCGGG	1 cut(s)	588
TspRI	CASTG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	707
VpaK11BI	GGWCC	2 cut(s)	522, 619
XapI	RAATTY	1 cut(s)	720
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	1 cut(s)	477
XhoI	CTCGAG	1 cut(s)	489
XmaI	CCCGGG	1 cut(s)	588
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.