Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009088

Physical Location & Seq

Genomic Coordinates Reverse (-)

7814920 .. 7824281

Gene Structure 9362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031726

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAGGCCGAAGATTTACCTTTTTGGTGATTCGATCACGGAGGAGTCGTTCGGCGACGGTGGCTGGGGTGCTTCTCTTGCCCACCAATTCTCTCGCACGGTTGATGTGGTGCTGAGAGGTTATAGCGGGTACAACACTCGGTGGGCTCAGAAGGTTCTAGAGAGGGTTTTTCCGGGGAGTCAAGACGGCGGCGGTGAAGCGCCGTTAGCCGTCACCGTCTTCTTCGGCGCTAATGACGCTTGCCTTCCCGATAGATGCTCTGGTTTTCAGCACGTGCCCCTTGACGAGTACAAGCAGAACCTCCGCTCCATTGTCTCCTTCCTCAAGAAGCAATGGCCTACCACTCACATTATTCTCATCACACCTCCTCCGATTGATGAAGATGGACGCCTTCAATTTCCCTATATTGAGAATCCATTGAATCAGCCCGAGAGGACAAATGAAGCTGCTGGTGCTTTTGCAGAGGCTTGTGTTGCCGTAGCTCGAGAAAGTGGTCTTCCAGTAATAGATCTCTGGACCAAAATGCAGCAGTTTCCTGACTGGCAGAAAGCTCAGCTAAGGGATGGTTTGCACCTTACTCTGCGGGGAAACAGACTCGTTTTTGAGGAAGTGGTTGCGAAGCTGAGGGATGAAGGATTGAGTCTAGAAAGTTTGCCGGTTGATCTCCCACTTATAGCTGATATTGACCCTAATGACCCTCTTAAGGCTTTTCAGAATGAAGCCCAGAACTCTCAGTCGGCGGGAAACAGGAATCAGGAAGTTAGAAGTTGGAAGTGGGCACTTCAATTCAAGACACTTATCTCCCCAGCACAAGAAATGGCTTCATTCTGCAGATCAGCGCTTATAGCTGGCTCAAGGTGTATCTCAGCTCGCTCCAGATCCCTCAACCACAGCTCACTAAATGCTACAAGCCCTAAAGTCTTGTCGTCTCCTTTTGCTTCATCGACTAAAGCAAACCCTAGGTCTATTAGGTTCATTTCAGTTCTTGGAAGCGTGGAGTCAATGATGCCATTTGACAGTGCCATTGCTTCTCCTCGGCTCAACTCCACAATTGCCTTTGATTTCACCTGCTGGAGTTGCCTTTCTCAAGGACTTCTTGATACTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

370

Amino Acids

40.74

Weight (kDa)

6.02

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	5 - 204	3.1e-29	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	7 - 199	3.5e-29	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45920 AT5G45920 AT5G45920 AT5G45920
fragaria_vesca	FvH4_3g04000 FvH4_3g08070 FvH4_3g08070
malus_domestica	MD05G1304500.v1.1
prunus_persica	Prupe.4G058000_v2.0.a1 Prupe.4G058000_v2.0.a1
pyrus_communis	pycom05g28170
rosa_chinensis	RchiOBHm_Chr5g0010151
rosa_laevigata	RLG00000031726
rosa_multiflora	Rmu_sc0000818.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066040
rosa_rugosa	Rorug04G0449300 Rorug04G0449400
rosa_samantha	Rh5AG080300 Rh5BG074800 Rh5CG088600 Rh5DG075700
rosa_wichuraiana	Rw5G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1076
Acc36I	ACCTGC	1 cut(s)	1076
AccBSI	CCGCTC	1 cut(s)	306
AciI	CCGC	6 cut(s)	126, 189, 192, 304, 583, 740
AclWI	GGATC	1 cut(s)	873
AcvI	CACGTG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	388
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	131, 290
AfeI	AGCGCT	1 cut(s)	840
AfiI	CCNNNNNNNGG	1 cut(s)	703
AflII	CTTAAG	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	395, 421, 785, 790
AloI	GAACNNNNNNTCC	4 cut(s)	32, 64, 290, 322
Alw26I	GTCTC	2 cut(s)	319, 933
AlwI	GGATC	1 cut(s)	873
Ama87I	CYCGRG	2 cut(s)	428, 483
Aor51HI	AGCGCT	1 cut(s)	840
AoxI	GGCC	2 cut(s)	5, 335
ApeKI	GCWGC	2 cut(s)	446, 526
ArsI	GACNNNNNNTTYG	2 cut(s)	947, 979
AspA2I	CCTAGG	1 cut(s)	959
AspLEI	GCGC	3 cut(s)	202, 230, 841
AspS9I	GGNCC	1 cut(s)	516
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	4 cut(s)	38, 205, 206, 1057
AvaI	CYCGRG	2 cut(s)	428, 483
AvaII	GGWCC	1 cut(s)	516
AvrII	CCTAGG	1 cut(s)	959
BaeGI	GKGCMC	2 cut(s)	279, 781
BanII	GRGCYC	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	274
BbsI	GAAGAC	2 cut(s)	211, 488
BbvCI	CCTCAGC	1 cut(s)	623
BbvI	GCAGC	2 cut(s)	433, 538
BccI	CCATC	2 cut(s)	377, 557
BceAI	ACGGC	4 cut(s)	187, 194, 202, 461
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	319, 933
BfaI	CTAG	4 cut(s)	158, 644, 960, 1104
BfmI	CTRYAG	1 cut(s)	829
BfoI	RGCGCY	3 cut(s)	203, 231, 842
BfrI	CTTAAG	1 cut(s)	701
BfuAI	ACCTGC	1 cut(s)	1076
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	3 cut(s)	190, 447, 527
BlnI	CCTAGG	1 cut(s)	959
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	3 cut(s)	191, 448, 528
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	516
BmeT110I	CYCGRG	2 cut(s)	428, 483
BmgT120I	GGNCC	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	245, 996
BpiI	GAAGAC	2 cut(s)	211, 488
BpmI	CTGGAG	2 cut(s)	859, 1093
Bpu10I	CCTNAGC	2 cut(s)	557, 623
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	3 cut(s)	308, 838, 1071
BpuMI	CCSGG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	388
BsaJI	CCNNGG	3 cut(s)	173, 959, 1034
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 62, 290, 320, 352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	703
Bse118I	RCCGGY	1 cut(s)	655
Bse1I	ACTGG	2 cut(s)	500, 545
Bse3DI	GCAATG	2 cut(s)	338, 1023
BseDI	CCNNGG	3 cut(s)	173, 959, 1034
BseGI	GGATG	2 cut(s)	568, 634
BseLI	CCNNNNNNNGG	1 cut(s)	703
BseMI	GCAATG	2 cut(s)	338, 1023
BseMII	CTCAG	6 cut(s)	104, 161, 566, 614, 746, 879
BseNI	ACTGG	2 cut(s)	500, 545
BseRI	GAGGAG	3 cut(s)	56, 357, 1023
BseSI	GKGCMC	2 cut(s)	279, 781
BseXI	GCAGC	2 cut(s)	433, 538
BseYI	CCCAGC	2 cut(s)	63, 805
BshFI	GGCC	2 cut(s)	7, 337
BsiHKCI	CYCGRG	2 cut(s)	428, 483
BsiSI	CCGG	2 cut(s)	173, 656
BslI	CCNNNNNNNGG	1 cut(s)	703
BsmAI	GTCTC	2 cut(s)	319, 933
BsmBI	CGTCTC	1 cut(s)	933
BsnI	GGCC	2 cut(s)	7, 337
BsoBI	CYCGRG	2 cut(s)	428, 483
Bsp1286I	GDGCHC	3 cut(s)	148, 279, 781
Bsp143I	GATC	5 cut(s)	33, 508, 661, 833, 878
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	6 cut(s)	126, 189, 192, 304, 583, 740
BspANI	GGCC	2 cut(s)	7, 337
BspCNI	CTCAG	6 cut(s)	105, 160, 565, 615, 745, 878
BspMAI	CTGCAG	1 cut(s)	833
BspMI	ACCTGC	1 cut(s)	1076
BspPI	GGATC	1 cut(s)	873
BspTI	CTTAAG	1 cut(s)	701
BsrBI	CCGCTC	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	338, 1023
BsrFI	RCCGGY	1 cut(s)	655
BsrI	ACTGG	2 cut(s)	500, 545
BssAI	RCCGGY	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	173, 959, 1034
BssMI	GATC	5 cut(s)	33, 508, 661, 833, 878
BssNI	GRCGYC	1 cut(s)	388
BssT1I	CCWWGG	1 cut(s)	959
Bst4CI	ACNGT	4 cut(s)	59, 100, 217, 1019
BstACI	GRCGYC	1 cut(s)	388
BstAFI	CTTAAG	1 cut(s)	701
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	241, 850, 871
BstDEI	CTNAG	7 cut(s)	113, 147, 552, 557, 623, 732, 865
BstF5I	GGATG	2 cut(s)	568, 634
BstH2I	RGCGCY	3 cut(s)	203, 231, 842
BstHHI	GCGC	3 cut(s)	202, 230, 841
BstKTI	GATC	5 cut(s)	36, 511, 664, 836, 881
BstMAI	GTCTC	2 cut(s)	319, 933
BstMBI	GATC	5 cut(s)	33, 508, 661, 833, 878
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 77, 206, 236, 452, 473, 845, 1077
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	829
BstSLI	GKGCMC	2 cut(s)	279, 781
BstV1I	GCAGC	2 cut(s)	433, 538
BstV2I	GAAGAC	2 cut(s)	211, 488
BstX2I	RGATCY	2 cut(s)	508, 878
BstYI	RGATCY	2 cut(s)	508, 878
BsuRI	GGCC	2 cut(s)	7, 337
BtsCI	GGATG	2 cut(s)	568, 634
BtsIMutI	CAGTG	1 cut(s)	1024
BveI	ACCTGC	1 cut(s)	1076
Cac8I	GCNNGC	3 cut(s)	241, 850, 871
CfoI	GCGC	3 cut(s)	202, 230, 841
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	1 cut(s)	516
CseI	GACGC	2 cut(s)	245, 396
Csp6I	GTAC	2 cut(s)	130, 289
CviQI	GTAC	2 cut(s)	130, 289
DdeI	CTNAG	7 cut(s)	113, 147, 552, 557, 623, 732, 865
DpnI	GATC	5 cut(s)	35, 510, 663, 835, 880
DpnII	GATC	5 cut(s)	33, 508, 661, 833, 878
DraIII	CACNNNGTG	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	959
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	516
Eco47III	AGCGCT	1 cut(s)	840
Eco72I	CACGTG	1 cut(s)	274
Eco88I	CYCGRG	2 cut(s)	428, 483
EcoT14I	CCWWGG	1 cut(s)	959
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	959
Esp3I	CGTCTC	1 cut(s)	933
FaiI	YATR	4 cut(s)	123, 405, 674, 845
FalI	AAGNNNNNCTT	1 cut(s)	1080
FauI	CCCGC	3 cut(s)	119, 576, 733
Fnu4HI	GCNGC	3 cut(s)	190, 447, 527
FokI	GGATG	2 cut(s)	575, 641
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	3 cut(s)	190, 447, 527
FspBI	CTAG	4 cut(s)	158, 644, 960, 1104
GlaI	GCGC	3 cut(s)	201, 229, 840
GluI	GCNGC	3 cut(s)	190, 447, 527
GsaI	CCCAGC	2 cut(s)	67, 809
GsuI	CTGGAG	2 cut(s)	859, 1093
HaeII	RGCGCY	3 cut(s)	203, 231, 842
HaeIII	GGCC	2 cut(s)	7, 337
HapII	CCGG	2 cut(s)	173, 656
HgaI	GACGC	2 cut(s)	245, 396
HhaI	GCGC	3 cut(s)	202, 230, 841
Hin1I	GRCGYC	1 cut(s)	388
Hin6I	GCGC	3 cut(s)	200, 228, 839
HinP1I	GCGC	3 cut(s)	200, 228, 839
HinfI	GANTC	9 cut(s)	29, 44, 178, 412, 421, 594, 640, 751, 998
HpaII	CCGG	2 cut(s)	173, 656
HphI	GGTGA	4 cut(s)	38, 205, 206, 1057
Hpy188I	TCNGA	3 cut(s)	150, 372, 714
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	145, 254, 328, 401, 626
HpyCH4III	ACNGT	4 cut(s)	59, 100, 217, 1019
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	4 cut(s)	461, 526, 571, 831
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 77, 206, 236, 452, 473, 845, 1077
HpyF3I	CTNAG	7 cut(s)	113, 147, 552, 557, 623, 732, 865
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	388
HspAI	GCGC	3 cut(s)	200, 228, 839
Kzo9I	GATC	5 cut(s)	33, 508, 661, 833, 878
LmnI	GCTCC	2 cut(s)	311, 878
Lsp1109I	GCAGC	2 cut(s)	433, 538
LweI	GCATC	2 cut(s)	245, 996
MaeI	CTAG	4 cut(s)	158, 644, 960, 1104
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	5 cut(s)	35, 510, 663, 835, 880
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	5 cut(s)	33, 508, 661, 833, 878
MboII	GAAGA	5 cut(s)	22, 211, 214, 392, 488
MfeI	CAATTG	1 cut(s)	1050
MflI	RGATCY	2 cut(s)	508, 878
MhlI	GDGCHC	3 cut(s)	148, 279, 781
MluCI	AATT	4 cut(s)	86, 395, 785, 1050
MlyI	GAGTC	5 cut(s)	53, 187, 588, 649, 1007
MmeI	TCCRAC	1 cut(s)	749
MseI	TTAA	1 cut(s)	702
MspCI	CTTAAG	1 cut(s)	701
MspI	CCGG	2 cut(s)	173, 656
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	1050
MwoI	GCNNNNNNNGC	8 cut(s)	60, 77, 206, 236, 452, 473, 845, 1077
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	5 cut(s)	33, 508, 661, 833, 878
NmeAIII	GCCGAG	1 cut(s)	1015
NmuCI	GTSAC	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	483
PaqCI	CACCTGC	1 cut(s)	1076
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	4 cut(s)	29, 412, 421, 751
PkrI	GCNGC	3 cut(s)	191, 448, 528
PleI	GAGTC	5 cut(s)	52, 186, 588, 648, 1006
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
PpsI	GAGTC	5 cut(s)	52, 186, 588, 648, 1006
Ppu21I	YACGTR	1 cut(s)	274
PspCI	CACGTG	1 cut(s)	274
PspFI	CCCAGC	2 cut(s)	63, 805
PspPI	GGNCC	1 cut(s)	516
PstI	CTGCAG	1 cut(s)	833
PsuI	RGATCY	2 cut(s)	508, 878
RsaI	GTAC	2 cut(s)	131, 290
RsaNI	GTAC	2 cut(s)	130, 289
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	3 cut(s)	190, 447, 527
Sau3AI	GATC	5 cut(s)	33, 508, 661, 833, 878
Sau96I	GGNCC	1 cut(s)	516
SchI	GAGTC	5 cut(s)	53, 187, 588, 649, 1007
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	3 cut(s)	148, 279, 781
SfaNI	GCATC	2 cut(s)	245, 996
SfcI	CTRYAG	1 cut(s)	829
Sfr274I	CTCGAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	516
SlaI	CTCGAG	1 cut(s)	483
SmlI	CTYRAG	5 cut(s)	323, 483, 701, 853, 1086
SmoI	CTYRAG	5 cut(s)	323, 483, 701, 853, 1086
Sse9I	AATT	4 cut(s)	86, 395, 785, 1050
SsiI	CCGC	6 cut(s)	126, 189, 192, 304, 583, 740
SspMI	CTAG	4 cut(s)	158, 644, 960, 1104
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	959
TaaI	ACNGT	4 cut(s)	59, 100, 217, 1019
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	3 cut(s)	32, 484, 944
TasI	AATT	4 cut(s)	86, 395, 785, 1050
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	4 cut(s)	29, 412, 421, 751
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	1 cut(s)	1024
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	446, 526
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	7 cut(s)	393, 456, 645, 732, 813, 930, 964
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	1024
Vha464I	CTTAAG	1 cut(s)	701
VpaK11BI	GGWCC	1 cut(s)	516
XbaI	TCTAGA	2 cut(s)	157, 643
XhoI	CTCGAG	1 cut(s)	483
XmaJI	CCTAGG	1 cut(s)	959
XspI	CTAG	4 cut(s)	158, 644, 960, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.