Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000818.1

Orthogroup ID

OG0009088

Physical Location & Seq

Genomic Coordinates Reverse (-)

27143 .. 30211

Gene Structure 3069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000818.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgaggccgaagatttacctttttggtgattcgatcacggaggagtcgttcggcgacggtggctggggtgcttctcttgcccaccaattctctcgcacggttgatgtggtgctgagaggttatagcgggtacaacactcggtgggctcagaaggttctggagagggtttttccggggagtcaagacggcggcggtgaagcgccgttagctgtcaccgtcttcttcggcgctaatgacgcttgccttcccgatagatgctctggttttcagcacgtgccggttgacgagtacaagcagaacctccgctccattgtctccttcctcaagaagcaatggcctactactcacattattctcatcacacctcctccgattgatgaagatggacgccttcaatttccctatattgagaatccattgaatcagcccgagaggacaaatgaagctgctggtgcttttgcagaggcttgtgttgccgtagctcgagaaagtggtcttccagtaatagatctctggaccaaaatgcagcagtttcctgactggcagaaagctcatctaagggatggtttgcaccttactccgcggggaaacagactcgtttttgaggaagtggttgtgaagctgagggatgaaggattgagtctagaaagtttgccagttgatctcccacttatagctgatattgaccctaatgaccctcttaaggcttttcagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

239

Amino Acids

26.69

Weight (kDa)

5.16

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45920 AT5G45920 AT5G45920 AT5G45920
fragaria_vesca	FvH4_3g04000 FvH4_3g08070 FvH4_3g08070
malus_domestica	MD05G1304500.v1.1
prunus_persica	Prupe.4G058000_v2.0.a1 Prupe.4G058000_v2.0.a1
pyrus_communis	pycom05g28170
rosa_chinensis	RchiOBHm_Chr5g0010151
rosa_laevigata	RLG00000031726
rosa_multiflora	Rmu_sc0000818.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066040
rosa_rugosa	Rorug04G0449300 Rorug04G0449400
rosa_samantha	Rh5AG080300 Rh5BG074800 Rh5CG088600 Rh5DG075700
rosa_wichuraiana	Rw5G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	306
AccII	CGCG	1 cut(s)	583
AciI	CCGC	6 cut(s)	126, 189, 192, 304, 581, 583
AcvI	CACGTG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	388
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	131, 290
AfiI	CCNNNNNNNGG	1 cut(s)	703
AflII	CTTAAG	1 cut(s)	701
AgsI	TTSAA	2 cut(s)	395, 421
AloI	GAACNNNNNNTCC	4 cut(s)	32, 64, 290, 322
AluBI	AGCT	6 cut(s)	209, 446, 482, 551, 622, 677
AluI	AGCT	6 cut(s)	209, 446, 482, 551, 622, 677
Alw26I	GTCTC	1 cut(s)	319
Ama87I	CYCGRG	2 cut(s)	428, 483
AoxI	GGCC	2 cut(s)	5, 335
ApeKI	GCWGC	2 cut(s)	446, 526
AspLEI	GCGC	2 cut(s)	202, 230
AspS9I	GGNCC	1 cut(s)	516
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	3 cut(s)	38, 205, 206
AvaI	CYCGRG	2 cut(s)	428, 483
AvaII	GGWCC	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	274
BbsI	GAAGAC	2 cut(s)	211, 488
BbvCI	CCTCAGC	1 cut(s)	623
BbvI	GCAGC	2 cut(s)	433, 538
BccI	CCATC	2 cut(s)	377, 557
BceAI	ACGGC	3 cut(s)	187, 202, 461
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	644
BfoI	RGCGCY	2 cut(s)	203, 231
BfrI	CTTAAG	1 cut(s)	701
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	3 cut(s)	190, 447, 527
BlsI	GCNGC	3 cut(s)	191, 448, 528
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	516
BmeT110I	CYCGRG	2 cut(s)	428, 483
BmgT120I	GGNCC	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	245
BpiI	GAAGAC	2 cut(s)	211, 488
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	623
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	388
BsaJI	CCNNGG	2 cut(s)	173, 581
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 62, 290, 320, 352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	703
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	3 cut(s)	500, 545, 656
Bse3DI	GCAATG	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	173, 581
BseGI	GGATG	2 cut(s)	568, 634
BseLI	CCNNNNNNNGG	1 cut(s)	703
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	3 cut(s)	104, 161, 614
BseNI	ACTGG	3 cut(s)	500, 545, 656
BseRI	GAGGAG	2 cut(s)	56, 357
BseXI	GCAGC	2 cut(s)	433, 538
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	2 cut(s)	7, 337
BsiHKCI	CYCGRG	2 cut(s)	428, 483
BsiSI	CCGG	2 cut(s)	173, 278
BslI	CCNNNNNNNGG	1 cut(s)	703
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	7, 337
BsoBI	CYCGRG	2 cut(s)	428, 483
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	33, 508, 661
BspACI	CCGC	6 cut(s)	126, 189, 192, 304, 581, 583
BspANI	GGCC	2 cut(s)	7, 337
BspCNI	CTCAG	3 cut(s)	105, 160, 615
BspFNI	CGCG	1 cut(s)	583
BspTI	CTTAAG	1 cut(s)	701
BsrBI	CCGCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	500, 545, 656
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	173, 581
BssMI	GATC	3 cut(s)	33, 508, 661
BssNI	GRCGYC	1 cut(s)	388
Bst4CI	ACNGT	3 cut(s)	59, 100, 217
BstACI	GRCGYC	1 cut(s)	388
BstAFI	CTTAAG	1 cut(s)	701
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	4 cut(s)	113, 147, 557, 623
BstDSI	CCRYGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	568, 634
BstFNI	CGCG	1 cut(s)	583
BstH2I	RGCGCY	2 cut(s)	203, 231
BstHHI	GCGC	2 cut(s)	202, 230
BstKTI	GATC	3 cut(s)	36, 511, 664
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	33, 508, 661
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 77, 206, 236, 452, 473
BstSCI	CCNGG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	433, 538
BstV2I	GAAGAC	2 cut(s)	211, 488
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	7, 337
BtgI	CCRYGG	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	568, 634
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	2 cut(s)	202, 230
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	516
Cfr42I	CCGCGG	1 cut(s)	584
CseI	GACGC	2 cut(s)	245, 396
Csp6I	GTAC	2 cut(s)	130, 289
CviQI	GTAC	2 cut(s)	130, 289
DdeI	CTNAG	4 cut(s)	113, 147, 557, 623
DpnI	GATC	3 cut(s)	35, 510, 663
DpnII	GATC	3 cut(s)	33, 508, 661
DraIII	CACNNNGTG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	516
Eco72I	CACGTG	1 cut(s)	274
Eco88I	CYCGRG	2 cut(s)	428, 483
EcoT38I	GRGCYC	1 cut(s)	148
FaiI	YATR	3 cut(s)	123, 405, 674
FauI	CCCGC	2 cut(s)	119, 576
Fnu4HI	GCNGC	3 cut(s)	190, 447, 527
FokI	GGATG	2 cut(s)	575, 641
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	3 cut(s)	190, 447, 527
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	2 cut(s)	201, 229
GluI	GCNGC	3 cut(s)	190, 447, 527
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	2 cut(s)	203, 231
HaeIII	GGCC	2 cut(s)	7, 337
HapII	CCGG	2 cut(s)	173, 278
HgaI	GACGC	2 cut(s)	245, 396
HhaI	GCGC	2 cut(s)	202, 230
Hin1I	GRCGYC	1 cut(s)	388
Hin6I	GCGC	2 cut(s)	200, 228
HinP1I	GCGC	2 cut(s)	200, 228
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	7 cut(s)	29, 44, 178, 412, 421, 594, 640
HpaII	CCGG	2 cut(s)	173, 278
HphI	GGTGA	3 cut(s)	38, 205, 206
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	3 cut(s)	150, 372, 714
Hpy188III	TCNNGA	8 cut(s)	158, 182, 248, 325, 485, 514, 536, 644
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	145, 254, 328, 401, 626
HpyCH4III	ACNGT	3 cut(s)	59, 100, 217
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	461, 526, 571
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 77, 206, 236, 452, 473
HpyF3I	CTNAG	4 cut(s)	113, 147, 557, 623
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	388
HspAI	GCGC	2 cut(s)	200, 228
KspI	CCGCGG	1 cut(s)	584
Kzo9I	GATC	3 cut(s)	33, 508, 661
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	2 cut(s)	433, 538
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	35, 510, 663
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	3 cut(s)	33, 508, 661
MboII	GAAGA	5 cut(s)	22, 211, 214, 392, 488
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	86, 395
MlyI	GAGTC	4 cut(s)	53, 187, 588, 649
MseI	TTAA	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	583
MspCI	CTTAAG	1 cut(s)	701
MspI	CCGG	2 cut(s)	173, 278
MspR9I	CCNGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	6 cut(s)	60, 77, 206, 236, 452, 473
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	3 cut(s)	33, 508, 661
NmuCI	GTSAC	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	29, 412, 421
PkrI	GCNGC	3 cut(s)	191, 448, 528
PleI	GAGTC	4 cut(s)	52, 186, 588, 648
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
PpsI	GAGTC	4 cut(s)	52, 186, 588, 648
Ppu21I	YACGTR	1 cut(s)	274
PspCI	CACGTG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	2 cut(s)	131, 290
RsaNI	GTAC	2 cut(s)	130, 289
SacII	CCGCGG	1 cut(s)	584
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	3 cut(s)	190, 447, 527
Sau3AI	GATC	3 cut(s)	33, 508, 661
Sau96I	GGNCC	1 cut(s)	516
SchI	GAGTC	4 cut(s)	53, 187, 588, 649
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	245
Sfr274I	CTCGAG	1 cut(s)	483
Sfr303I	CCGCGG	1 cut(s)	584
SgrBI	CCGCGG	1 cut(s)	584
SinI	GGWCC	1 cut(s)	516
SlaI	CTCGAG	1 cut(s)	483
SmlI	CTYRAG	3 cut(s)	323, 483, 701
SmoI	CTYRAG	3 cut(s)	323, 483, 701
Sse9I	AATT	2 cut(s)	86, 395
SsiI	CCGC	6 cut(s)	126, 189, 192, 304, 581, 583
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	3 cut(s)	59, 100, 217
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	32, 484
TasI	AATT	2 cut(s)	86, 395
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	3 cut(s)	29, 412, 421
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	446, 526
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	393, 456, 645
TspGWI	ACGGA	1 cut(s)	53
Vha464I	CTTAAG	1 cut(s)	701
VpaK11BI	GGWCC	1 cut(s)	516
XbaI	TCTAGA	1 cut(s)	643
XhoI	CTCGAG	1 cut(s)	483
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.