Rorug04G0449300

GDSL esterase lipase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
60444744 .. 60445362
619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0449300.1

Sequence Viewer

Length: 342 bp
ATGGAAGGTCTCTGGAATCCCATGTTTGACTATTGGATAAAGAAATGTCTTGTACAAGTGAGGCAACTTGATGATTCCCTTGTAGAAAAAATGAAAGTTTCAAGCAGTGCAGAGGAATGGAAATCGCGTGGCATGAAGCTGTATCATGAGCGTAATTATGAAATGGCCAATATGTGCTTCCAAAATGCACATGATTCTTACTGGGAAAGAAGGTCAAAAGCCGGCGGCCTCAAAGTTATGGCTTATTGTATGCAAACATCAAATCCTGAAAAGGCTAAATCCATTCTTAGGGAAGCTGCTGAAATTTTTGAAGATATAGGGATGTCAATTTCTGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

13.19

Weight (kDa)

6.73

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 127
AciI CCGC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 303
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 2 cut(s) 102, 311
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 2 cut(s) 139, 296
AluI AGCT 2 cut(s) 139, 296
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 2 cut(s) 165, 226
ApeKI GCWGC 2 cut(s) 296, 335
ApoI RAATTY 1 cut(s) 303
BalI TGGCCA 1 cut(s) 167
BbvI GCAGC 2 cut(s) 283, 322
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 340
BisI GCNGC 3 cut(s) 226, 297, 336
BlsI GCNGC 3 cut(s) 227, 298, 337
BmrI ACTGGG 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 211
BsaI GGTCTC 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 283, 322
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 127
BshFI GGCC 2 cut(s) 167, 228
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 14
BsnI GGCC 2 cut(s) 167, 228
Bso31I GGTCTC 1 cut(s) 14
Bsp1407I TGTACA 1 cut(s) 52
BspACI CCGC 1 cut(s) 225
BspANI GGCC 2 cut(s) 167, 228
BspFNI CGCG 1 cut(s) 127
BspHI TCATGA 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 221
BsrGI TGTACA 1 cut(s) 52
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 14
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 283, 322
BsuRI GGCC 2 cut(s) 167, 228
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 223
CciI TCATGA 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 221
Csp6I GTAC 1 cut(s) 53
CviAII CATG 4 cut(s) 22, 133, 146, 191
CviJI RGCY 7 cut(s) 139, 167, 221, 228, 242, 275, 296
CviKI_1 RGCY 7 cut(s) 139, 167, 221, 228, 242, 275, 296
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 14
FaeI CATG 4 cut(s) 25, 136, 149, 194
FaiI YATR 9 cut(s) 23, 134, 147, 159, 173, 192, 239, 251, 317
FatI CATG 4 cut(s) 21, 132, 145, 190
Fnu4HI GCNGC 3 cut(s) 226, 297, 336
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 3 cut(s) 226, 297, 336
FspBI CTAG 1 cut(s) 340
GluI GCNGC 3 cut(s) 226, 297, 336
HaeIII GGCC 2 cut(s) 167, 228
HapII CCGG 1 cut(s) 222
Hin1II CATG 4 cut(s) 25, 136, 149, 194
HinfI GANTC 3 cut(s) 16, 74, 194
HpaII CCGG 1 cut(s) 222
Hpy188III TCNNGA 3 cut(s) 13, 146, 266
HpyAV CCTTC 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 110, 188, 253
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 4 cut(s) 25, 136, 149, 194
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
LpnPI CCDG 3 cut(s) 187, 235, 279
Lsp1109I GCAGC 2 cut(s) 283, 322
MaeI CTAG 1 cut(s) 340
MboII GAAGA 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 3 cut(s) 154, 303, 327
MluNI TGGCCA 1 cut(s) 167
MnlI CCTC 3 cut(s) 54, 106, 239
Mox20I TGGCCA 1 cut(s) 167
MroNI GCCGGC 1 cut(s) 221
MscI TGGCCA 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 127
NaeI GCCGGC 1 cut(s) 223
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 4 cut(s) 25, 136, 149, 194
PagI TCATGA 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 3 cut(s) 16, 74, 194
PkrI GCNGC 3 cut(s) 227, 298, 337
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SatI GCNGC 3 cut(s) 226, 297, 336
SetI ASST 4 cut(s) 10, 141, 215, 298
Sse9I AATT 3 cut(s) 154, 303, 327
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 340
TasI AATT 3 cut(s) 154, 303, 327
TatI WGTACW 1 cut(s) 52
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 3 cut(s) 16, 74, 194
TscAI CASTG 1 cut(s) 112
TseI GCWGC 2 cut(s) 296, 335
TspDTI ATGAA 3 cut(s) 107, 149, 174
TspRI CASTG 1 cut(s) 112
XapI RAATTY 1 cut(s) 303
XspI CTAG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.