Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008221

Physical Location & Seq

Genomic Coordinates Reverse (-)

18629562 .. 18630706

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCTTCAACAACAACAGATTCTACAGAATTGCAAAATCTGATCAAACTGTTTCAAAATTGCCAAACTCATCCTCGTCAACATTTTCCTGCAAAATCTTCAGCTGTATTAGTTTGTCTATACCAAGAACAAAGAGAAGACAAAAACGAGCTACGCGTAATCTTAACCAAACGATCTACTACTCTCTCTTCTCATCCTGGGGAAGTAGCATTGCCTGGAGGAAAAAGAGACCAAGAAGATAAAGATGATATAGCTACTGCGTTGAGAGAAGCTCGTGAAGAAATCGGTTTAGATCCTTCTCTTGTTACAATCATTTCTGTTCTTGAACCATTTGTTAACAAGAAGGGAATGTCGGTAGCACCAGTTATCGGTTTTCTACACGATAAGAAAGCGTTTAAACAGTTACCAAATCCAGCTGAAGTGGAAGAGATCTTTGATGTGCCATTAGAGATGTTCCTCAAGGACAGAAACAGGCGAGCAGAGGAACGAGAGCATGAAGGAGAGAGATATCTTCTTCAATACTTTGATTACTATTCCGAAGATAAAGAGAGAAGCTTTATCATATGGGCACTCACTGCTGGTATTCTGATCAGAGTTGCCTCCATTGTTTATCAGAGATTACCGGAGTTTCAAGAACGTAAACCGAGTTTCTGGAATCAGCCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000210 GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008893 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044273 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

222

Amino Acids

25.68

Weight (kDa)

5.65

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	34 - 152	5.7e-13	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45940 AT5G45940 AT5G45940
fragaria_vesca	FvH4_6g11030
malus_domestica	MD04G1162300.v1.1 MD10G1284100.v1.1 MD12G1174800.v1.1
prunus_persica	Prupe.4G057300_v2.0.a1 Prupe.4G057400_v2.0.a1 Prupe.6G282000_v2.0.a1
pyrus_communis	pycom04g14530 pycom10g23700 pycom10g23710
rosa_chinensis	RchiOBHm_Chr3g0462341
rosa_laevigata	RLG00000024865
rosa_multiflora	Rmu_sc0015540.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417570
rosa_rugosa	Rorug03G0056000
rosa_samantha	Rh3AG114600 Rh3BG117800 Rh3CG120600 Rh3DG119800
rosa_wichuraiana	Rw3G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AclWI	GGATC	1 cut(s)	287
AcuI	CTGAAG	2 cut(s)	84, 438
AfiI	CCNNNNNNNGG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	5 cut(s)	9, 56, 326, 518, 632
AjnI	CCWGG	2 cut(s)	196, 214
AluBI	AGCT	6 cut(s)	104, 151, 254, 272, 416, 555
AluI	AGCT	6 cut(s)	104, 151, 254, 272, 416, 555
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	571
BauI	CACGAG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	144
BciT130I	CCWGG	2 cut(s)	198, 216
BclI	TGATCA	2 cut(s)	42, 588
BcoDI	GTCTC	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	24
BglII	AGATCT	1 cut(s)	429
Bme1390I	CCNGG	2 cut(s)	198, 216
BmrFI	CCNGG	2 cut(s)	198, 216
BpiI	GAAGAC	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	622
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	209
BseBI	CCWGG	2 cut(s)	198, 216
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	2 cut(s)	70, 193
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMI	GCAATG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	571
Bsh1236I	CGCG	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	623
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	222
Bso31I	GGTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	5 cut(s)	42, 173, 292, 429, 588
BspFNI	CGCG	1 cut(s)	156
BspPI	GGATC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	5 cut(s)	42, 173, 292, 429, 588
BssSI	CACGAG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	198, 216
Bst4CI	ACNGT	2 cut(s)	51, 402
Bst6I	CTCTTC	2 cut(s)	193, 420
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	70, 193
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	5 cut(s)	45, 176, 295, 432, 591
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	5 cut(s)	42, 173, 292, 429, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstNI	CCWGG	2 cut(s)	198, 216
BstSCI	CCNGG	2 cut(s)	196, 214
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	571
BstUI	CGCG	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	2 cut(s)	292, 429
BstYI	RGATCY	2 cut(s)	292, 429
BtsCI	GGATG	2 cut(s)	70, 193
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	1 cut(s)	477
CviAII	CATG	1 cut(s)	494
CviJI	RGCY	7 cut(s)	104, 151, 254, 272, 416, 555, 661
CviKI_1	RGCY	7 cut(s)	104, 151, 254, 272, 416, 555, 661
DpnI	GATC	5 cut(s)	44, 175, 294, 431, 590
DpnII	GATC	5 cut(s)	42, 173, 292, 429, 588
DraI	TTTAAA	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	193, 420
EarI	CTCTTC	2 cut(s)	193, 420
Eco31I	GGTCTC	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	509
Eco57I	CTGAAG	2 cut(s)	84, 438
EcoRII	CCWGG	2 cut(s)	196, 214
EcoRV	GATATC	1 cut(s)	509
FaeI	CATG	1 cut(s)	497
FaiI	YATR	5 cut(s)	121, 251, 495, 563, 565
FatI	CATG	1 cut(s)	493
FauNDI	CATATG	1 cut(s)	563
FbaI	TGATCA	2 cut(s)	42, 588
FokI	GGATG	2 cut(s)	57, 180
GsuI	CTGGAG	1 cut(s)	237
HapII	CCGG	1 cut(s)	623
Hin1II	CATG	1 cut(s)	497
HincII	GTYRAC	2 cut(s)	80, 337
HindII	GTYRAC	2 cut(s)	80, 337
HindIII	AAGCTT	1 cut(s)	553
HinfI	GANTC	2 cut(s)	20, 655
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	623
Hpy166II	GTNNAC	3 cut(s)	80, 337, 641
Hpy188I	TCNGA	5 cut(s)	42, 538, 588, 593, 615
Hpy188III	TCNNGA	4 cut(s)	275, 323, 632, 652
Hpy8I	GTNNAC	3 cut(s)	80, 337, 641
HpyAV	CCTTC	3 cut(s)	306, 337, 491
HpyCH4III	ACNGT	2 cut(s)	51, 402
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	2 cut(s)	34, 92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	1 cut(s)	497
Ksp22I	TGATCA	2 cut(s)	42, 588
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	42, 173, 292, 429, 588
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	2 cut(s)	304, 402
MalI	GATC	5 cut(s)	44, 175, 294, 431, 590
MboI	GATC	5 cut(s)	42, 173, 292, 429, 588
MboII	GAAGA	9 cut(s)	90, 149, 180, 248, 290, 437, 503, 506, 551
MflI	RGATCY	2 cut(s)	292, 429
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	2 cut(s)	29, 58
MluI	ACGCGT	1 cut(s)	154
MnlI	CCTC	5 cut(s)	84, 212, 467, 475, 610
MseI	TTAA	3 cut(s)	164, 336, 396
MspA1I	CMGCKG	2 cut(s)	104, 416
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	2 cut(s)	198, 216
MssI	GTTTAAAC	1 cut(s)	397
MvaI	CCWGG	2 cut(s)	198, 216
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	575
NdeI	CATATG	1 cut(s)	563
NdeII	GATC	5 cut(s)	42, 173, 292, 429, 588
NlaIII	CATG	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	20, 655
PmeI	GTTTAAAC	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	196, 214
PspGI	CCWGG	2 cut(s)	196, 214
PsuI	RGATCY	2 cut(s)	292, 429
PvuII	CAGCTG	2 cut(s)	104, 416
SaqAI	TTAA	3 cut(s)	164, 336, 396
Sau3AI	GATC	5 cut(s)	42, 173, 292, 429, 588
ScrFI	CCNGG	2 cut(s)	198, 216
SduI	GDGCHC	1 cut(s)	571
SetI	ASST	7 cut(s)	106, 153, 256, 274, 418, 557, 640
SfcI	CTRYAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	29, 58
StyD4I	CCNGG	2 cut(s)	196, 214
TaaI	ACNGT	2 cut(s)	51, 402
TaiI	ACGT	1 cut(s)	640
TasI	AATT	2 cut(s)	29, 58
TfiI	GAWTC	2 cut(s)	20, 655
Tru1I	TTAA	3 cut(s)	164, 336, 396
Tru9I	TTAA	3 cut(s)	164, 336, 396
TscAI	CASTG	1 cut(s)	580
TspDTI	ATGAA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.