Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008221

Physical Location & Seq

Genomic Coordinates Reverse (-)

26313577 .. 26314992

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G282000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTTGTACAGAGGATTGGGGAAGAAGCCAAATGCTCCGAAGGCTTGCCAAGCAGCTTCAGTTTTACAAACCACCCTCAGTGCTGGACGAATTGGAGGACGATAACGACGACGGTATAGGCTTAAGCTCTGGCATCAGCTGCAACTCTTTAGCAGTCAGAAATGTAAAGTGTTCTTGTGCCAACAATTTGAGGGAGAGAAGAGCAGCTGTCCTGATATGCCTCTTTGAGGGTCCTGAGGGTGAGCTGAGAGTTATTCTTACTAGGAGATCCATGAAGTTGGCATCACACCCAGGAGATGTGGCGTTGCCGGGTGGCAAAATGGAGGAGGAAGATGCAGATGAATCTGCAACAGCACTGAGGGAAGCCATGGAAGAGATTGGCCTAAATTCAGGCCTAGTTCAAGTTGTTGCAAAACTAGAGTGCTTTATGTCCCAGCATTTAGTCACGGTTGTCCCGGTGATAGGACTTGTAGCTGAAATAGAAGATTTCAAGCCTGTACTTAATCCCGACGAAGTTGATGCTATTTTTGATGTTCCATTGGAGATGTTTCTTAAGGAAGACAATCACAGATTTGAGGAGAGAGAATGGATGGGTTGGAAGTACATCCTCCATCTTTTCGATTTCGAATCAGAGCAAGGACAGTTTCTAATTTGGGGATTAACTGCAAGCATTTTAATTCGAGCGGCCTCTGTTATCTACCAGCAACCTCCATTCTTCCAAGGACATCTCCCTGACTTCCAAAAACTGCAAAAAGCCTTGCACAATGTGCATAATGTTAATTCAAATGTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

266

Amino Acids

29.85

Weight (kDa)

4.84

Isoelectric Point (pI)

64.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45940 AT5G45940 AT5G45940
fragaria_vesca	FvH4_6g11030
malus_domestica	MD04G1162300.v1.1 MD10G1284100.v1.1 MD12G1174800.v1.1
prunus_persica	Prupe.4G057300_v2.0.a1 Prupe.4G057400_v2.0.a1 Prupe.6G282000_v2.0.a1
pyrus_communis	pycom04g14530 pycom10g23700 pycom10g23710
rosa_chinensis	RchiOBHm_Chr3g0462341
rosa_laevigata	RLG00000024865
rosa_multiflora	Rmu_sc0015540.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417570
rosa_rugosa	Rorug03G0056000
rosa_samantha	Rh3AG114600 Rh3BG117800 Rh3CG120600 Rh3DG119800
rosa_wichuraiana	Rw3G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	686
AciI	CCGC	1 cut(s)	686
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	769
AfaI	GTAC	3 cut(s)	10, 501, 605
AfiI	CCNNNNNNNGG	2 cut(s)	229, 464
AflII	CTTAAG	2 cut(s)	124, 554
AgsI	TTSAA	3 cut(s)	404, 493, 786
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	6 cut(s)	58, 129, 141, 209, 247, 476
AluI	AGCT	6 cut(s)	58, 129, 141, 209, 247, 476
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	3 cut(s)	382, 394, 687
ApeKI	GCWGC	3 cut(s)	55, 141, 206
ApoI	RAATTY	1 cut(s)	388
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	2 cut(s)	312, 458
AsuHPI	GGTGA	2 cut(s)	254, 472
AsuII	TTCGAA	1 cut(s)	627
AvaII	GGWCC	1 cut(s)	233
AxyI	CCTNAGG	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	567
BbvI	GCAGC	3 cut(s)	67, 128, 218
BccI	CCATC	2 cut(s)	586, 621
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	2 cut(s)	312, 458
BfaI	CTAG	3 cut(s)	264, 398, 419
BfrI	CTTAAG	2 cut(s)	124, 554
BisI	GCNGC	4 cut(s)	56, 142, 207, 687
BlsI	GCNGC	4 cut(s)	57, 143, 208, 688
Bme1390I	CCNGG	3 cut(s)	294, 312, 458
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	3 cut(s)	294, 312, 458
BmsI	GCATC	4 cut(s)	144, 293, 325, 511
BpiI	GAAGAC	1 cut(s)	567
Bpu14I	TTCGAA	1 cut(s)	627
BpuMI	CCSGG	2 cut(s)	312, 458
BsaJI	CCNNGG	3 cut(s)	292, 369, 721
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 464
Bse21I	CCTNAGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	3 cut(s)	292, 369, 721
BseGI	GGATG	2 cut(s)	597, 606
BseLI	CCNNNNNNNGG	2 cut(s)	229, 464
BseMII	CTCAG	4 cut(s)	93, 228, 239, 350
BseRI	GAGGAG	2 cut(s)	341, 593
BseXI	GCAGC	3 cut(s)	67, 128, 218
BseYI	CCCAGC	1 cut(s)	435
BshFI	GGCC	3 cut(s)	384, 396, 689
BsiSI	CCGG	2 cut(s)	311, 458
BslFI	GGGAC	2 cut(s)	418, 440
BslI	CCNNNNNNNGG	2 cut(s)	229, 464
BsmFI	GGGAC	2 cut(s)	418, 440
BsnI	GGCC	3 cut(s)	384, 396, 689
Bsp119I	TTCGAA	1 cut(s)	627
Bsp1407I	TGTACA	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	686
BspANI	GGCC	3 cut(s)	384, 396, 689
BspCNI	CTCAG	4 cut(s)	92, 229, 240, 351
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	196
BspT104I	TTCGAA	1 cut(s)	627
BspTI	CTTAAG	2 cut(s)	124, 554
BsrBI	CCGCTC	1 cut(s)	686
BsrGI	TGTACA	1 cut(s)	8
BssECI	CCNNGG	3 cut(s)	292, 369, 721
BssMI	GATC	1 cut(s)	269
BssT1I	CCWWGG	2 cut(s)	369, 721
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	116, 451, 645
Bst6I	CTCTTC	2 cut(s)	196, 369
BstAFI	CTTAAG	2 cut(s)	124, 554
BstAPI	GCANNNNNTGC	2 cut(s)	141, 769
BstAUI	TGTACA	1 cut(s)	8
BstBI	TTCGAA	1 cut(s)	627
BstC8I	GCNNGC	2 cut(s)	48, 670
BstDEI	CTNAG	4 cut(s)	79, 237, 248, 359
BstDSI	CCRYGG	1 cut(s)	369
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	597, 606
BstKTI	GATC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 52, 141, 769
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	3 cut(s)	292, 310, 456
BstV1I	GCAGC	3 cut(s)	67, 128, 218
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	269
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	384, 396, 689
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	597, 606
BtsIMutI	CAGTG	2 cut(s)	87, 356
Cac8I	GCNNGC	2 cut(s)	48, 670
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	3 cut(s)	9, 500, 604
CviAII	CATG	3 cut(s)	274, 370, 795
CviQI	GTAC	3 cut(s)	9, 500, 604
DdeI	CTNAG	4 cut(s)	79, 237, 248, 359
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
DraIII	CACNNNGTG	1 cut(s)	769
Eam1104I	CTCTTC	2 cut(s)	196, 369
EarI	CTCTTC	2 cut(s)	196, 369
Eco130I	CCWWGG	2 cut(s)	369, 721
Eco147I	AGGCCT	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	237
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	369, 721
ErhI	CCWWGG	2 cut(s)	369, 721
FaeI	CATG	3 cut(s)	277, 373, 798
FaiI	YATR	7 cut(s)	119, 220, 275, 371, 431, 774, 796
FaqI	GGGAC	2 cut(s)	418, 440
FatI	CATG	3 cut(s)	273, 369, 794
Fnu4HI	GCNGC	4 cut(s)	56, 142, 207, 687
FokI	GGATG	2 cut(s)	593, 604
Fsp4HI	GCNGC	4 cut(s)	56, 142, 207, 687
FspBI	CTAG	3 cut(s)	264, 398, 419
GluI	GCNGC	4 cut(s)	56, 142, 207, 687
GsaI	CCCAGC	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	384, 396, 689
HapII	CCGG	2 cut(s)	311, 458
Hin1II	CATG	3 cut(s)	277, 373, 798
HinfI	GANTC	2 cut(s)	344, 629
HpaII	CCGG	2 cut(s)	311, 458
HphI	GGTGA	2 cut(s)	254, 472
Hpy188I	TCNGA	3 cut(s)	41, 161, 634
Hpy188III	TCNNGA	3 cut(s)	214, 236, 509
Hpy99I	CGWCG	3 cut(s)	113, 116, 515
HpyAV	CCTTC	1 cut(s)	36
HpyCH4III	ACNGT	3 cut(s)	116, 451, 645
HpyCH4V	TGCA	8 cut(s)	144, 338, 350, 413, 668, 751, 763, 772
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 52, 141, 769
HpyF3I	CTNAG	4 cut(s)	79, 237, 248, 359
Hsp92II	CATG	3 cut(s)	277, 373, 798
Kzo9I	GATC	1 cut(s)	269
LguI	GCTCTTC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	3 cut(s)	67, 128, 218
LweI	GCATC	4 cut(s)	144, 293, 325, 511
MaeI	CTAG	3 cut(s)	264, 398, 419
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	271
MbiI	CCGCTC	1 cut(s)	686
MboI	GATC	1 cut(s)	269
MboII	GAAGA	7 cut(s)	36, 213, 344, 386, 497, 572, 709
MflI	RGATCY	1 cut(s)	269
MluCI	AATT	6 cut(s)	92, 187, 388, 651, 678, 781
MmeI	TCCRAC	1 cut(s)	578
MseI	TTAA	6 cut(s)	125, 504, 555, 662, 677, 780
MspA1I	CMGCKG	2 cut(s)	141, 209
MspCI	CTTAAG	2 cut(s)	124, 554
MspI	CCGG	2 cut(s)	311, 458
MspR9I	CCNGG	3 cut(s)	294, 312, 458
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	43, 52, 141, 769
NciI	CCSGG	2 cut(s)	312, 458
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	1 cut(s)	269
NlaIII	CATG	3 cut(s)	277, 373, 798
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	445
NspV	TTCGAA	1 cut(s)	627
PceI	AGGCCT	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	344, 629
PkrI	GCNGC	4 cut(s)	57, 143, 208, 688
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	233
PspPPI	RGGWCCY	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	269
PvuII	CAGCTG	2 cut(s)	141, 209
RsaI	GTAC	3 cut(s)	10, 501, 605
RsaNI	GTAC	3 cut(s)	9, 500, 604
SapI	GCTCTTC	1 cut(s)	196
SaqAI	TTAA	6 cut(s)	125, 504, 555, 662, 677, 780
SatI	GCNGC	4 cut(s)	56, 142, 207, 687
Sau3AI	GATC	1 cut(s)	269
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	3 cut(s)	294, 312, 458
SetI	ASST	7 cut(s)	60, 131, 143, 211, 249, 478, 712
SfaNI	GCATC	4 cut(s)	144, 293, 325, 511
SfuI	TTCGAA	1 cut(s)	627
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	124, 554
SmoI	CTYRAG	2 cut(s)	124, 554
Sse9I	AATT	6 cut(s)	92, 187, 388, 651, 678, 781
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	1 cut(s)	686
SspMI	CTAG	3 cut(s)	264, 398, 419
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	292, 310, 456
StyI	CCWWGG	2 cut(s)	369, 721
TaaI	ACNGT	3 cut(s)	116, 451, 645
TaqI	TCGA	3 cut(s)	621, 627, 682
TasI	AATT	6 cut(s)	92, 187, 388, 651, 678, 781
TatI	WGTACW	3 cut(s)	8, 499, 603
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	2 cut(s)	344, 629
Tru1I	TTAA	6 cut(s)	125, 504, 555, 662, 677, 780
Tru9I	TTAA	6 cut(s)	125, 504, 555, 662, 677, 780
TscAI	CASTG	2 cut(s)	87, 363
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	3 cut(s)	55, 141, 206
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	2 cut(s)	290, 357
TspRI	CASTG	2 cut(s)	87, 363
Vha464I	CTTAAG	2 cut(s)	124, 554
VpaK11BI	GGWCC	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	388
XspI	CTAG	3 cut(s)	264, 398, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.