Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008221

Physical Location & Seq

Genomic Coordinates Forward (+)

2743359 .. 2744772

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G057400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCATTCAGGCAGCGTTGAACAAAGGCTCCAAGCCTTAGCACAACATTTTATTGCCGAGAAAGCAGTGAAACCGGGTCCAGCAGGTCCTGCCAGCACCGCCGCCGGTACAAGCAAACGAGCAGCGGTTCTGGTGTGTTTGTTCAAAGGGGAAGATGGCGATCTGCACGTCATTCTCACAAAGCGAGCCTCAACTCTCTCTTCTAACCCCGGCGATGTTGCGCTCCCCGGCGGGAAAAGAGAGGAAGGGGATGCTGATGACGTGGACACTGCCCTTCGGGAGGCCAAGGAGGAGATCGGCTTGGACCCTTCCCTAGTCAACGTTATCACCGTTCTTCAACCCATTGTAACCAAGCGTGGTATGGCTGTGGTTCCTGTAATTGGCCTACTTTCAGACATAAAAGCATTTAGTCCAGCTCCAAATGCTGCAGAAGTGGAAGCAATGTTCTATGCTCCCTTGGAAATGTTTCTCAAGGATGAGAATAGGAGAGCAGAGGAGAGAGAATGGATGGGAGCCAAGTATCTGTTACATTATTTTAACTATGAAGCAGATGGTAAAGAGTATGTCATCTGGGCTTTAACTGCTGGCATTCTGATAAGGACTGCATCAATTGTGTACCAAAGGCAGCCACCATTTTCCGAGCAGAGGCCGAAATTCTGGAGTGATGTTGCTCAGAACACTGCCATGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000210 GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008893 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044273 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

231

Amino Acids

25.06

Weight (kDa)

5.48

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45940 AT5G45940 AT5G45940
fragaria_vesca	FvH4_6g11030
malus_domestica	MD04G1162300.v1.1 MD10G1284100.v1.1 MD12G1174800.v1.1
prunus_persica	Prupe.4G057300_v2.0.a1 Prupe.4G057400_v2.0.a1 Prupe.6G282000_v2.0.a1
pyrus_communis	pycom04g14530 pycom10g23700 pycom10g23710
rosa_chinensis	RchiOBHm_Chr3g0462341
rosa_laevigata	RLG00000024865
rosa_multiflora	Rmu_sc0015540.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417570
rosa_rugosa	Rorug03G0056000
rosa_samantha	Rh3AG114600 Rh3BG117800 Rh3CG120600 Rh3DG119800
rosa_wichuraiana	Rw3G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	74
AciI	CCGC	4 cut(s)	99, 102, 125, 231
AclI	AACGTT	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	653
AfaI	GTAC	2 cut(s)	109, 617
AfiI	CCNNNNNNNGG	3 cut(s)	280, 380, 645
AgsI	TTSAA	3 cut(s)	20, 145, 338
AjiI	CACGTC	2 cut(s)	169, 262
AloI	GAACNNNNNNTCC	4 cut(s)	12, 44, 428, 460
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	3 cut(s)	282, 382, 647
ApeKI	GCWGC	4 cut(s)	12, 122, 425, 625
ApoI	RAATTY	1 cut(s)	653
Asp700I	GAANNNNTTC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	3 cut(s)	77, 86, 304
AsuC2I	CCSGG	3 cut(s)	75, 210, 228
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	3 cut(s)	77, 86, 304
BbvI	GCAGC	4 cut(s)	24, 134, 412, 637
BccI	CCATC	3 cut(s)	149, 502, 545
BcnI	CCSGG	3 cut(s)	75, 210, 228
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	74
BisI	GCNGC	5 cut(s)	13, 102, 123, 426, 626
BlsI	GCNGC	5 cut(s)	14, 103, 124, 427, 627
Bme1390I	CCNGG	3 cut(s)	75, 210, 228
Bme18I	GGWCC	3 cut(s)	77, 86, 304
BmgBI	CACGTC	2 cut(s)	169, 262
BmgT120I	GGNCC	3 cut(s)	77, 86, 304
BmiI	GGNNCC	5 cut(s)	29, 78, 306, 372, 514
BmrFI	CCNGG	3 cut(s)	75, 210, 228
BmsI	GCATC	2 cut(s)	241, 614
BpmI	CTGGAG	1 cut(s)	679
Bpu10I	CCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	3 cut(s)	75, 210, 228
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	208, 226, 285, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 380, 645
Bse118I	RCCGGY	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	4 cut(s)	208, 226, 285, 456
BseGI	GGATG	3 cut(s)	256, 481, 513
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	280, 380, 645
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	686
BseRI	GAGGAG	2 cut(s)	305, 509
BseXI	GCAGC	4 cut(s)	24, 134, 412, 637
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	284, 384, 649
BsiSI	CCGG	4 cut(s)	74, 105, 210, 228
BslI	CCNNNNNNNGG	3 cut(s)	280, 380, 645
BsmI	GAATGC	2 cut(s)	4, 588
BsnI	GGCC	3 cut(s)	284, 384, 649
Bsp143I	GATC	2 cut(s)	160, 294
BspACI	CCGC	4 cut(s)	99, 102, 125, 231
BspANI	GGCC	3 cut(s)	284, 384, 649
BspCNI	CTCAG	1 cut(s)	685
BspLI	GGNNCC	5 cut(s)	29, 78, 306, 372, 514
BspMAI	CTGCAG	1 cut(s)	430
BspMI	ACCTGC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	4 cut(s)	208, 226, 285, 456
BssMI	GATC	2 cut(s)	160, 294
BssT1I	CCWWGG	2 cut(s)	285, 456
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	205
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	94, 186, 586
BstDEI	CTNAG	2 cut(s)	37, 672
BstENI	CCTNNNNNAGG	1 cut(s)	278
BstF5I	GGATG	3 cut(s)	256, 481, 513
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	163, 297
BstMBI	GATC	2 cut(s)	160, 294
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 89, 98, 422, 581
BstSCI	CCNGG	3 cut(s)	73, 208, 226
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	4 cut(s)	24, 134, 412, 637
BsuRI	GGCC	3 cut(s)	284, 384, 649
BtgZI	GCGATG	1 cut(s)	228
BtrI	CACGTC	2 cut(s)	169, 262
BtsCI	GGATG	3 cut(s)	256, 481, 513
BtsI	GCAGTG	3 cut(s)	72, 267, 678
BtsIMutI	CAGTG	3 cut(s)	72, 267, 678
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	3 cut(s)	94, 186, 586
CaiI	CAGNNNCTG	1 cut(s)	89
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	3 cut(s)	77, 86, 304
Csp6I	GTAC	2 cut(s)	108, 616
CviAII	CATG	1 cut(s)	685
CviQI	GTAC	2 cut(s)	108, 616
DdeI	CTNAG	2 cut(s)	37, 672
DpnI	GATC	2 cut(s)	162, 296
DpnII	GATC	2 cut(s)	160, 294
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	285, 456
Eco47I	GGWCC	3 cut(s)	77, 86, 304
EcoNI	CCTNNNNNAGG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	86
EcoT14I	CCWWGG	2 cut(s)	285, 456
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	285, 456
FaeI	CATG	1 cut(s)	688
FaiI	YATR	7 cut(s)	362, 398, 450, 543, 564, 686, 691
FatI	CATG	1 cut(s)	684
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	5 cut(s)	13, 102, 123, 426, 626
FokI	GGATG	3 cut(s)	263, 488, 520
Fsp4HI	GCNGC	5 cut(s)	13, 102, 123, 426, 626
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	5 cut(s)	13, 102, 123, 426, 626
GsuI	CTGGAG	1 cut(s)	679
HaeIII	GGCC	3 cut(s)	284, 384, 649
HapII	CCGG	4 cut(s)	74, 105, 210, 228
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	688
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HpaII	CCGG	4 cut(s)	74, 105, 210, 228
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	3 cut(s)	265, 319, 616
Hpy188I	TCNGA	4 cut(s)	394, 594, 640, 675
Hpy188III	TCNNGA	2 cut(s)	278, 658
Hpy8I	GTNNAC	3 cut(s)	265, 319, 616
HpyAV	CCTTC	3 cut(s)	239, 284, 318
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	3 cut(s)	168, 261, 321
HpyCH4V	TGCA	4 cut(s)	4, 166, 428, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 89, 98, 422, 581
HpyF3I	CTNAG	2 cut(s)	37, 672
HpySE526I	ACGT	3 cut(s)	168, 261, 321
Hsp92II	CATG	1 cut(s)	688
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	2 cut(s)	160, 294
LmnI	GCTCC	5 cut(s)	33, 228, 421, 457, 512
Lsp1109I	GCAGC	4 cut(s)	24, 134, 412, 637
LweI	GCATC	2 cut(s)	241, 614
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	3 cut(s)	168, 261, 321
MaeIII	GTNAC	2 cut(s)	346, 525
MalI	GATC	2 cut(s)	162, 296
MboI	GATC	2 cut(s)	160, 294
MboII	GAAGA	3 cut(s)	164, 192, 326
MfeI	CAATTG	1 cut(s)	609
MluCI	AATT	3 cut(s)	378, 609, 653
MnlI	CCTC	6 cut(s)	199, 235, 274, 283, 487, 639
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	2 cut(s)	537, 578
MslI	CAYNNNNRTG	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	4 cut(s)	74, 105, 210, 228
MspR9I	CCNGG	3 cut(s)	75, 210, 228
MunI	CAATTG	1 cut(s)	609
Mva1269I	GAATGC	2 cut(s)	4, 588
MwoI	GCNNNNNNNGC	5 cut(s)	62, 89, 98, 422, 581
NciI	CCSGG	3 cut(s)	75, 210, 228
NdeII	GATC	2 cut(s)	160, 294
NlaIII	CATG	1 cut(s)	688
NlaIV	GGNNCC	5 cut(s)	29, 78, 306, 372, 514
NmeAIII	GCCGAG	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PctI	GAATGC	2 cut(s)	4, 588
PdmI	GAANNNNTTC	1 cut(s)	465
PkrI	GCNGC	5 cut(s)	14, 103, 124, 427, 627
PpuMI	RGGWCCY	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	86
PspN4I	GGNNCC	5 cut(s)	29, 78, 306, 372, 514
PspPI	GGNCC	3 cut(s)	77, 86, 304
PspPPI	RGGWCCY	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	89
RsaI	GTAC	2 cut(s)	109, 617
RsaNI	GTAC	2 cut(s)	108, 616
RseI	CAYNNNNRTG	1 cut(s)	683
SaqAI	TTAA	2 cut(s)	537, 578
SatI	GCNGC	5 cut(s)	13, 102, 123, 426, 626
Sau3AI	GATC	2 cut(s)	160, 294
Sau96I	GGNCC	3 cut(s)	77, 86, 304
ScrFI	CCNGG	3 cut(s)	75, 210, 228
SetI	ASST	5 cut(s)	88, 171, 264, 324, 418
SfaNI	GCATC	2 cut(s)	241, 614
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	3 cut(s)	77, 86, 304
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	3 cut(s)	378, 609, 653
SsiI	CCGC	4 cut(s)	99, 102, 125, 231
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	3 cut(s)	73, 208, 226
StyI	CCWWGG	2 cut(s)	285, 456
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	3 cut(s)	171, 264, 324
TasI	AATT	3 cut(s)	378, 609, 653
TauI	GCSGC	1 cut(s)	104
Tru1I	TTAA	2 cut(s)	537, 578
Tru9I	TTAA	2 cut(s)	537, 578
TscAI	CASTG	3 cut(s)	72, 274, 685
TseI	GCWGC	4 cut(s)	12, 122, 425, 625
TspDTI	ATGAA	1 cut(s)	558
TspRI	CASTG	3 cut(s)	72, 274, 685
VpaK11BI	GGWCC	3 cut(s)	77, 86, 304
XagI	CCTNNNNNAGG	1 cut(s)	278
XapI	RAATTY	1 cut(s)	653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.