pycom10g23700

Nudix hydrolase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
25769575 .. 25770552
978 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g23700.1

Sequence Viewer

Length: 699 bp
ATGGGTTCTGCTGAGCTAAGACTCCAAACTCTAGCACAACATTTCAGACTCGAAGAATCAGTCAAACCACCTCCACCACCTACCGGTTCCGCCACCTCCGATTCAACAACCAAACGGGCGGCGGTTCTGGTGTGTCTGTTCAAAGGGGATGACGGTGAGCTGCGCGTCATTCTCACGAAACGATCTTCATCTCTGTCTTCCAGCCCTGGCGACGTTGCGCTCCCCGGTGGGAAAAGAGAGGAAGCGGATGCTGATGACGTGCACACCGCCCTCCGGGAGGCCAAGGAGGAGATCGGCCTGGACCCTTCCCTAGTCAACGTCGTCTCCGTTCTCGATCACATTGTAAACTCGCATGGTGTGATTGTGGTTCCGGTAATTGGCCTACTTTCTGACATAAAAGCTTTTAGTCCGGCTCCAAATGCTGCAGAAGTGGAGGCAATTTTTTATGCTCCTTTAGAAACGTTTCTCAAGGATGAGAAGAGGAGAGAGGAGGAGAGAGAATGGATGGGAGACAAGTATCTCTTACATTACTTCGACTTTGAAGCAGATGATGGTGAAGTATATGTGATATGGGCCCTAACTGCTGGCCTTCTGATAAGCGCTGCTTCAGCAGTGTATCAGCGGCCGCCGGCGTTTCTCGAGCGGAGGCCAAAGTTCTGGAAGAGTGGCCAGGGAGCACCACCATGCCCTAGGTTTTAA

Protein Analysis

233

Amino Acids

25.4

Weight (kDa)

5.13

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 38 - 166 6.8e-12 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 643
AccII CGCG 1 cut(s) 165
AciI CCGC 8 cut(s) 90, 119, 122, 245, 267, 622, 626, 643
AclI AACGTT 1 cut(s) 461
AcoI YGGCCR 2 cut(s) 623, 667
AcuI CTGAAG 1 cut(s) 591
AfeI AGCGCT 1 cut(s) 601
AfiI CCNNNNNNNGG 4 cut(s) 83, 273, 277, 377
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 3 cut(s) 105, 142, 542
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 3 cut(s) 205, 297, 669
AluBI AGCT 3 cut(s) 16, 160, 401
AluI AGCT 3 cut(s) 16, 160, 401
Alw21I GWGCWC 2 cut(s) 264, 679
Alw26I GTCTC 2 cut(s) 328, 504
Alw44I GTGCAC 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 638
Aor51HI AGCGCT 1 cut(s) 601
AoxI GGCC 8 cut(s) 279, 295, 379, 573, 586, 623, 647, 667
ApaI GGGCCC 1 cut(s) 577
ApaLI GTGCAC 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 160, 422, 602
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
AsiGI ACCGGT 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 462
AspA2I CCTAGG 1 cut(s) 689
AspLEI GCGC 3 cut(s) 165, 220, 602
AspS9I GGNCC 3 cut(s) 301, 573, 574
AsuC2I CCSGG 2 cut(s) 225, 275
AsuHPI GGTGA 2 cut(s) 167, 566
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 1 cut(s) 301
AvrII CCTAGG 1 cut(s) 689
BaeGI GKGCMC 2 cut(s) 264, 577
BalI TGGCCA 1 cut(s) 669
BanII GRGCYC 1 cut(s) 577
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 264, 679
BbvI GCAGC 3 cut(s) 147, 409, 589
BccI CCATC 2 cut(s) 499, 545
BciT130I CCWGG 3 cut(s) 207, 299, 671
BcnI CCSGG 2 cut(s) 225, 275
BcoDI GTCTC 2 cut(s) 328, 504
BfaI CTAG 3 cut(s) 32, 311, 690
BfmI CTRYAG 1 cut(s) 423
BfoI RGCGCY 1 cut(s) 603
BisI GCNGC 6 cut(s) 120, 161, 423, 603, 623, 626
BlnI CCTAGG 1 cut(s) 689
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 6 cut(s) 121, 162, 424, 604, 624, 627
Bme1390I CCNGG 5 cut(s) 207, 225, 275, 299, 671
Bme18I GGWCC 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 638
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 3 cut(s) 301, 573, 574
BmiI GGNNCC 5 cut(s) 88, 303, 369, 414, 575
BmrFI CCNGG 5 cut(s) 207, 225, 275, 299, 671
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 452
BpuMI CCSGG 2 cut(s) 225, 275
BsaBI GATNNNNATC 1 cut(s) 187
BsaJI CCNNGG 5 cut(s) 205, 223, 282, 670, 689
BsaWI WCCGGW 2 cut(s) 83, 370
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 273, 277, 377
Bse118I RCCGGY 2 cut(s) 83, 628
Bse8I GATNNNNATC 1 cut(s) 187
BseBI CCWGG 3 cut(s) 207, 299, 671
BseDI CCNNGG 5 cut(s) 205, 223, 282, 670, 689
BseGI GGATG 4 cut(s) 154, 253, 478, 510
BseJI GATNNNNATC 1 cut(s) 187
BseLI CCNNNNNNNGG 4 cut(s) 83, 273, 277, 377
BseRI GAGGAG 4 cut(s) 302, 496, 503, 506
BseSI GKGCMC 2 cut(s) 264, 577
BseX3I CGGCCG 1 cut(s) 623
BseXI GCAGC 3 cut(s) 147, 409, 589
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 626
BshFI GGCC 8 cut(s) 281, 297, 381, 575, 588, 625, 649, 669
BshTI ACCGGT 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 626
BsiHKAI GWGCWC 2 cut(s) 264, 679
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 6 cut(s) 84, 225, 274, 371, 410, 629
BslI CCNNNNNNNGG 4 cut(s) 83, 273, 277, 377
BsmAI GTCTC 2 cut(s) 328, 504
BsmBI CGTCTC 1 cut(s) 328
BsnI GGCC 8 cut(s) 281, 297, 381, 575, 588, 625, 649, 669
BsoBI CYCGRG 1 cut(s) 638
Bsp120I GGGCCC 1 cut(s) 573
Bsp1286I GDGCHC 3 cut(s) 264, 577, 679
Bsp143I GATC 3 cut(s) 182, 291, 334
Bsp1720I GCTNAGC 1 cut(s) 12
BspACI CCGC 8 cut(s) 90, 119, 122, 245, 267, 622, 626, 643
BspANI GGCC 8 cut(s) 281, 297, 381, 575, 588, 625, 649, 669
BspCNI CTCAG 1 cut(s) 4
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 5 cut(s) 88, 303, 369, 414, 575
BspMAI CTGCAG 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 643
BsrFI RCCGGY 2 cut(s) 83, 628
BssAI RCCGGY 2 cut(s) 83, 628
BssECI CCNNGG 5 cut(s) 205, 223, 282, 670, 689
BssMI GATC 3 cut(s) 182, 291, 334
BssT1I CCWWGG 2 cut(s) 282, 689
Bst2UI CCWGG 3 cut(s) 207, 299, 671
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 2 cut(s) 473, 656
BstC8I GCNNGC 2 cut(s) 586, 630
BstDEI CTNAG 2 cut(s) 12, 17
BstENI CCTNNNNNAGG 1 cut(s) 275
BstF5I GGATG 4 cut(s) 154, 253, 478, 510
BstFNI CGCG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 3 cut(s) 165, 220, 602
BstKTI GATC 3 cut(s) 185, 294, 337
BstMAI GTCTC 2 cut(s) 328, 504
BstMBI GATC 3 cut(s) 182, 291, 334
BstMCI CGRYCG 1 cut(s) 626
BstMWI GCNNNNNNNGC 3 cut(s) 419, 581, 608
BstNI CCWGG 3 cut(s) 207, 299, 671
BstSCI CCNGG 5 cut(s) 205, 223, 273, 297, 669
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 2 cut(s) 264, 577
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 3 cut(s) 147, 409, 589
BstV2I GAAGAC 1 cut(s) 189
BstXI CCANNNNNNTGG 1 cut(s) 657
BstZI CGGCCG 1 cut(s) 623
BsuRI GGCC 8 cut(s) 281, 297, 381, 575, 588, 625, 649, 669
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 4 cut(s) 154, 253, 478, 510
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 618
Cac8I GCNNGC 2 cut(s) 586, 630
CciNI GCGGCCGC 1 cut(s) 623
CfoI GCGC 3 cut(s) 165, 220, 602
Cfr10I RCCGGY 2 cut(s) 83, 628
Cfr13I GGNCC 3 cut(s) 301, 573, 574
CseI GACGC 1 cut(s) 154
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 2 cut(s) 353, 684
DdeI CTNAG 2 cut(s) 12, 17
DpnI GATC 3 cut(s) 184, 293, 336
DpnII GATC 3 cut(s) 182, 291, 334
EaeI YGGCCR 2 cut(s) 623, 667
EagI CGGCCG 1 cut(s) 623
Eam1104I CTCTTC 2 cut(s) 473, 656
EarI CTCTTC 2 cut(s) 473, 656
EciI GGCGGA 1 cut(s) 79
EclXI CGGCCG 1 cut(s) 623
Eco130I CCWWGG 2 cut(s) 282, 689
Eco24I GRGCYC 1 cut(s) 577
Eco47I GGWCC 1 cut(s) 301
Eco47III AGCGCT 1 cut(s) 601
Eco52I CGGCCG 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 591
Eco88I CYCGRG 1 cut(s) 638
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 574
EcoRII CCWGG 3 cut(s) 205, 297, 669
EcoT14I CCWWGG 2 cut(s) 282, 689
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 2 cut(s) 282, 689
Esp3I CGTCTC 1 cut(s) 328
FaeI CATG 2 cut(s) 356, 687
FaiI YATR 7 cut(s) 354, 395, 447, 562, 564, 571, 685
FalI AAGNNNNNCTT 4 cut(s) 506, 538, 589, 621
FatI CATG 2 cut(s) 352, 683
Fnu4HI GCNGC 6 cut(s) 120, 161, 423, 603, 623, 626
FokI GGATG 4 cut(s) 161, 260, 485, 517
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 6 cut(s) 120, 161, 423, 603, 623, 626
FspBI CTAG 3 cut(s) 32, 311, 690
GlaI GCGC 3 cut(s) 164, 219, 601
GluI GCNGC 6 cut(s) 120, 161, 423, 603, 623, 626
HaeII RGCGCY 1 cut(s) 603
HaeIII GGCC 8 cut(s) 281, 297, 381, 575, 588, 625, 649, 669
HapII CCGG 6 cut(s) 84, 225, 274, 371, 410, 629
HgaI GACGC 1 cut(s) 154
HhaI GCGC 3 cut(s) 165, 220, 602
Hin1II CATG 2 cut(s) 356, 687
Hin6I GCGC 3 cut(s) 163, 218, 600
HinP1I GCGC 3 cut(s) 163, 218, 600
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 4 cut(s) 21, 48, 56, 101
HpaII CCGG 6 cut(s) 84, 225, 274, 371, 410, 629
HphI GGTGA 2 cut(s) 167, 566
Hpy166II GTNNAC 3 cut(s) 262, 316, 346
Hpy188I TCNGA 4 cut(s) 47, 100, 391, 594
Hpy188III TCNNGA 4 cut(s) 175, 332, 638, 658
Hpy8I GTNNAC 3 cut(s) 262, 316, 346
Hpy99I CGWCG 2 cut(s) 215, 323
HpyAV CCTTC 2 cut(s) 315, 599
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 4 cut(s) 213, 258, 318, 461
HpyCH4V TGCA 2 cut(s) 262, 425
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 581, 608
HpyF3I CTNAG 2 cut(s) 12, 17
HpySE526I ACGT 4 cut(s) 213, 258, 318, 461
Hsp92II CATG 2 cut(s) 356, 687
HspAI GCGC 3 cut(s) 163, 218, 600
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Kzo9I GATC 3 cut(s) 182, 291, 334
LmnI GCTCC 4 cut(s) 225, 418, 454, 674
Lsp1109I GCAGC 3 cut(s) 147, 409, 589
LweI GCATC 1 cut(s) 238
MaeI CTAG 3 cut(s) 32, 311, 690
MaeII ACGT 4 cut(s) 213, 258, 318, 461
MalI GATC 3 cut(s) 184, 293, 336
MbiI CCGCTC 1 cut(s) 643
MboI GATC 3 cut(s) 182, 291, 334
MboII GAAGA 5 cut(s) 65, 177, 189, 490, 673
MhlI GDGCHC 3 cut(s) 264, 577, 679
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 2 cut(s) 375, 438
MluNI TGGCCA 1 cut(s) 669
MlyI GAGTC 2 cut(s) 15, 42
Mox20I TGGCCA 1 cut(s) 669
MreI CGCCGGCG 1 cut(s) 628
MroNI GCCGGC 1 cut(s) 628
MroXI GAANNNNTTC 1 cut(s) 462
MscI TGGCCA 1 cut(s) 669
MseI TTAA 1 cut(s) 697
MslI CAYNNNNRTG 1 cut(s) 682
Msp20I TGGCCA 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 622
MspI CCGG 6 cut(s) 84, 225, 274, 371, 410, 629
MspR9I CCNGG 5 cut(s) 207, 225, 275, 299, 671
MvaI CCWGG 3 cut(s) 207, 299, 671
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 419, 581, 608
NaeI GCCGGC 1 cut(s) 630
NciI CCSGG 2 cut(s) 225, 275
NdeII GATC 3 cut(s) 182, 291, 334
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 2 cut(s) 356, 687
NlaIV GGNNCC 5 cut(s) 88, 303, 369, 414, 575
NotI GCGGCCGC 1 cut(s) 623
PaeR7I CTCGAG 1 cut(s) 638
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PdiI GCCGGC 1 cut(s) 630
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 56, 101
PfoI TCCNGGA 1 cut(s) 273
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 6 cut(s) 121, 162, 424, 604, 624, 627
PleI GAGTC 2 cut(s) 15, 42
PpsI GAGTC 2 cut(s) 15, 42
Psp1406I AACGTT 1 cut(s) 461
Psp6I CCWGG 3 cut(s) 205, 297, 669
PspGI CCWGG 3 cut(s) 205, 297, 669
PspN4I GGNNCC 5 cut(s) 88, 303, 369, 414, 575
PspOMI GGGCCC 1 cut(s) 573
PspPI GGNCC 3 cut(s) 301, 573, 574
PstI CTGCAG 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 682
SaqAI TTAA 1 cut(s) 697
SatI GCNGC 6 cut(s) 120, 161, 423, 603, 623, 626
Sau3AI GATC 3 cut(s) 182, 291, 334
Sau96I GGNCC 3 cut(s) 301, 573, 574
SchI GAGTC 2 cut(s) 15, 42
ScrFI CCNGG 5 cut(s) 207, 225, 275, 299, 671
SduI GDGCHC 3 cut(s) 264, 577, 679
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 423
Sfr274I CTCGAG 1 cut(s) 638
SgrAI CRCCGGYG 1 cut(s) 628
SinI GGWCC 1 cut(s) 301
SlaI CTCGAG 1 cut(s) 638
SmiMI CAYNNNNRTG 1 cut(s) 682
SmlI CTYRAG 2 cut(s) 467, 638
SmoI CTYRAG 2 cut(s) 467, 638
Sse9I AATT 2 cut(s) 375, 438
SsiI CCGC 8 cut(s) 90, 119, 122, 245, 267, 622, 626, 643
SspMI CTAG 3 cut(s) 32, 311, 690
StyD4I CCNGG 5 cut(s) 205, 223, 273, 297, 669
StyI CCWWGG 2 cut(s) 282, 689
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 4 cut(s) 216, 261, 321, 464
TaqI TCGA 4 cut(s) 51, 333, 534, 639
TasI AATT 2 cut(s) 375, 438
TauI GCSGC 3 cut(s) 122, 625, 628
TfiI GAWTC 2 cut(s) 56, 101
Tru1I TTAA 1 cut(s) 697
Tru9I TTAA 1 cut(s) 697
TscAI CASTG 1 cut(s) 618
TseI GCWGC 3 cut(s) 160, 422, 602
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 316
TspRI CASTG 1 cut(s) 618
VneI GTGCAC 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 301
XagI CCTNNNNNAGG 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 638
XmaJI CCTAGG 1 cut(s) 689
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 3 cut(s) 32, 311, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.