Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015540.1

Orthogroup ID

OG0008221

Physical Location & Seq

Genomic Coordinates Reverse (-)

5605 .. 7218

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015540.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgaacattgcaattggcctaaataataacatggcttatatagttcctccctctctgtgccaaacagaggatttgggaagcgaaaatctccgaaggcttgccaaacagcttcagttttacaaaccacccaaaccaattgacgaagtggaggaaaatattgagcatggcataaatgacgtgccttcttctgtaaaaatgagggagagaagagcagctgttctgatatgcctctttgaagatcctgaggatgagctaagagttattcttactagaagatcaatgaacttggcttcacatccaggtgatgtagcattgccaggtgggaaaatggaggagggagatgaagatgaatctgcaactgcactgagggaagccatggaagagattggcctagattctagtctagttcaagttgttgctcaactagagttctttttatctcagcacttgctcacagttgtccctgtaattggactcgtatcccggatagaagatttcaagcctctactcaacgctgacgaagttgatgcaatatttgatgtcccattggagatgtttctcaagaaagaaaatcacagatttgaggacagagaatggaggggatggaagtatgttgtccatcattttgatttcgaatccgagcaaggggagtttttaatatggggactaactgcaagcattctgattagagctgcctctgttatctaccaacaatctccattcttccaagcacatctccctgacttccaaactttgcaaagagccttgcatagtgttgactctaatgtagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

264

Amino Acids

30.01

Weight (kDa)

4.72

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45940 AT5G45940 AT5G45940
fragaria_vesca	FvH4_6g11030
malus_domestica	MD04G1162300.v1.1 MD10G1284100.v1.1 MD12G1174800.v1.1
prunus_persica	Prupe.4G057300_v2.0.a1 Prupe.4G057400_v2.0.a1 Prupe.6G282000_v2.0.a1
pyrus_communis	pycom04g14530 pycom10g23700 pycom10g23710
rosa_chinensis	RchiOBHm_Chr3g0462341
rosa_laevigata	RLG00000024865
rosa_multiflora	Rmu_sc0015540.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417570
rosa_rugosa	Rorug03G0056000
rosa_samantha	Rh3AG114600 Rh3BG117800 Rh3CG120600 Rh3DG119800
rosa_wichuraiana	Rw3G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	95
AfiI	CCNNNNNNNGG	3 cut(s)	67, 470, 645
AgsI	TTSAA	3 cut(s)	236, 410, 499
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	298, 316
AluBI	AGCT	4 cut(s)	109, 215, 253, 692
AluI	AGCT	4 cut(s)	109, 215, 253, 692
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	2 cut(s)	16, 388
ApeKI	GCWGC	2 cut(s)	212, 692
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	1 cut(s)	314
AsuII	TTCGAA	1 cut(s)	633
AxyI	CCTNAGG	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	224, 679
BccI	CCATC	2 cut(s)	597, 627
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	2 cut(s)	300, 318
BciVI	GTATCC	1 cut(s)	490
BcnI	CCSGG	1 cut(s)	484
BfaI	CTAG	5 cut(s)	270, 392, 399, 404, 425
BfuI	GTATCC	1 cut(s)	490
BisI	GCNGC	2 cut(s)	213, 693
BlsI	GCNGC	2 cut(s)	214, 694
Bme1390I	CCNGG	3 cut(s)	300, 318, 484
BmgBI	CACGTC	1 cut(s)	178
BmrFI	CCNGG	3 cut(s)	300, 318, 484
BmsI	GCATC	1 cut(s)	517
Bpu14I	TTCGAA	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 470, 645
Bse21I	CCTNAGG	1 cut(s)	243
Bse3DI	GCAATG	2 cut(s)	6, 311
BseBI	CCWGG	2 cut(s)	300, 318
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	3 cut(s)	253, 295, 608
BseLI	CCNNNNNNNGG	3 cut(s)	67, 470, 645
BseMI	GCAATG	2 cut(s)	6, 311
BseMII	CTCAG	3 cut(s)	234, 356, 455
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	224, 679
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	18, 390
BsiSI	CCGG	1 cut(s)	484
BslFI	GGGAC	3 cut(s)	446, 527, 678
BslI	CCNNNNNNNGG	3 cut(s)	67, 470, 645
BsmFI	GGGAC	3 cut(s)	446, 527, 678
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	2 cut(s)	18, 390
Bsp119I	TTCGAA	1 cut(s)	633
Bsp143I	GATC	2 cut(s)	238, 275
Bsp19I	CCATGG	1 cut(s)	375
BspANI	GGCC	2 cut(s)	18, 390
BspCNI	CTCAG	3 cut(s)	235, 357, 454
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	202
BspT104I	TTCGAA	1 cut(s)	633
BsrDI	GCAATG	2 cut(s)	6, 311
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	2 cut(s)	238, 275
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	300, 318
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	2 cut(s)	202, 375
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	99, 676
BstDEI	CTNAG	4 cut(s)	243, 254, 365, 441
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	253, 295, 608
BstKTI	GATC	2 cut(s)	241, 278
BstMBI	GATC	2 cut(s)	238, 275
BstNI	CCWGG	2 cut(s)	300, 318
BstSCI	CCNGG	3 cut(s)	298, 316, 482
BstV1I	GCAGC	2 cut(s)	224, 679
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	18, 390
BtgI	CCRYGG	1 cut(s)	375
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	253, 295, 608
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	2 cut(s)	99, 676
CviAII	CATG	4 cut(s)	31, 164, 376, 792
DdeI	CTNAG	4 cut(s)	243, 254, 365, 441
DpnI	GATC	2 cut(s)	240, 277
DpnII	GATC	2 cut(s)	238, 275
Eam1104I	CTCTTC	2 cut(s)	202, 375
EarI	CTCTTC	2 cut(s)	202, 375
Eco130I	CCWWGG	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	298, 316
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	4 cut(s)	34, 167, 379, 795
FaqI	GGGAC	3 cut(s)	446, 527, 678
FatI	CATG	4 cut(s)	30, 163, 375, 791
Fnu4HI	GCNGC	2 cut(s)	213, 693
FokI	GGATG	3 cut(s)	260, 282, 615
Fsp4HI	GCNGC	2 cut(s)	213, 693
FspBI	CTAG	5 cut(s)	270, 392, 399, 404, 425
GluI	GCNGC	2 cut(s)	213, 693
HaeIII	GGCC	2 cut(s)	18, 390
HapII	CCGG	1 cut(s)	484
Hin1II	CATG	4 cut(s)	34, 167, 379, 795
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HinfI	GANTC	5 cut(s)	350, 395, 474, 635, 779
HpaII	CCGG	1 cut(s)	484
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	4 cut(s)	92, 222, 640, 684
Hpy188III	TCNNGA	2 cut(s)	242, 562
Hpy8I	GTNNAC	1 cut(s)	778
HpyAV	CCTTC	2 cut(s)	87, 192
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	7 cut(s)	11, 356, 362, 530, 674, 757, 769
HpyF3I	CTNAG	4 cut(s)	243, 254, 365, 441
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	34, 167, 379, 795
Kzo9I	GATC	2 cut(s)	238, 275
LguI	GCTCTTC	1 cut(s)	202
LpnPI	CCDG	8 cut(s)	255, 285, 303, 312, 330, 477, 497, 753
Lsp1109I	GCAGC	2 cut(s)	224, 679
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	5 cut(s)	270, 392, 399, 404, 425
MaeII	ACGT	1 cut(s)	177
MalI	GATC	2 cut(s)	240, 277
MboI	GATC	2 cut(s)	238, 275
MboII	GAAGA	8 cut(s)	177, 219, 248, 285, 356, 392, 503, 715
MfeI	CAATTG	2 cut(s)	12, 135
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	3 cut(s)	12, 135, 468
MlyI	GAGTC	2 cut(s)	468, 773
MseI	TTAA	1 cut(s)	656
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	1 cut(s)	484
MspR9I	CCNGG	3 cut(s)	300, 318, 484
MunI	CAATTG	2 cut(s)	12, 135
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	2 cut(s)	300, 318
NciI	CCSGG	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	2 cut(s)	238, 275
NlaIII	CATG	4 cut(s)	34, 167, 379, 795
NspV	TTCGAA	1 cut(s)	633
PciSI	GCTCTTC	1 cut(s)	202
PctI	GAATGC	1 cut(s)	678
PfeI	GAWTC	3 cut(s)	350, 395, 635
PfoI	TCCNGGA	1 cut(s)	482
PkrI	GCNGC	2 cut(s)	214, 694
PleI	GAGTC	2 cut(s)	468, 773
PpsI	GAGTC	2 cut(s)	468, 773
Psp6I	CCWGG	2 cut(s)	298, 316
PspGI	CCWGG	2 cut(s)	298, 316
PsuI	RGATCY	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	656
SatI	GCNGC	2 cut(s)	213, 693
Sau3AI	GATC	2 cut(s)	238, 275
SchI	GAGTC	2 cut(s)	468, 773
ScrFI	CCNGG	3 cut(s)	300, 318, 484
SetI	ASST	7 cut(s)	111, 180, 217, 255, 304, 322, 694
SfaNI	GCATC	1 cut(s)	517
SfuI	TTCGAA	1 cut(s)	633
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	3 cut(s)	12, 135, 468
SspI	AATATT	2 cut(s)	157, 534
SspMI	CTAG	5 cut(s)	270, 392, 399, 404, 425
StyD4I	CCNGG	3 cut(s)	298, 316, 482
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	633
TasI	AATT	3 cut(s)	12, 135, 468
TfiI	GAWTC	3 cut(s)	350, 395, 635
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TscAI	CASTG	1 cut(s)	369
TseI	GCWGC	2 cut(s)	212, 692
TspDTI	ATGAA	4 cut(s)	17, 296, 357, 363
TspRI	CASTG	1 cut(s)	369
XspI	CTAG	5 cut(s)	270, 392, 399, 404, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.