Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008221

Physical Location & Seq

Genomic Coordinates Reverse (-)

4287539 .. 4288696

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0056000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTTCTGATGGCAGGAAAATGCCTCCTCAAAAGCAAGAATCTCAGCCTGGAAAAGAACACGCCATGAACCCCAACCCTCAGTTCTCAAACCCAGATTACAAACCCTCTAACAAGCTTCAAGGAAAGGTGGCGATAGTGACCGGAGGAGACTCCGGTATAGGGCGAGCGGTAAGCCATTACTTTGCTCAGGAGGGTGCAACTGTGGCCTTCACTTATGTGAAGGGCCAGGAGGACAAGGATGCACGTGACACACTCAAAATGATCAAGACGGTGAAAACTTCTGATGCCAAAGACCCGATTGCAGTTGCAGCTGATCTCGGTTTCGATGAGAATTGCAGGAGGGTTGTGGAGGAGGTGGTGAAAGCCTACGGCCGCATTGATATTCTGGTTAACAATGCGGCTGAGCAGTACACGACCAGCTCGGTGGAAGATATCGATGAGGCTCGTATTGAAAGGGTGTTTAGGACCAACATCTTTGCTTACTTTTTCATGGCAAGGCATGCTTTGAAGCACATGAAAGAAGGCAGCAATATAATTTGCACAACATCGGTTGTGGCTTACAAAGGAAATCAGAAGCTGCTTGATTATACAGCAACCAAGGGTGCGATTGTGGCATTCGTGAGAGGATTGTCACTTGAGCTAGTGAACAAAGGCATCCGGGTCAATGGTGTAGCTCCTGGACCAATATGGACCCCGTTGATTCCGGCATCTTTTGATGAGGAGGAGACTGCAAAGTTTGGCTCTGAAGTGCCAATGCAGCGACCTGGTCAGCCCTGTGAGGTTGCGCCTGCCTATGTCTTCCTTGCTTCCGATGCTTTCTCTTCTTACATAACCGGCCAAATCATCCATCCTAATGGTGGGATTATAGTAAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

293

Amino Acids

31.91

Weight (kDa)

6.54

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	37 - 288	2.1e-10	SDR-like rossmann domain
adh_short	PF00106	43 - 239	2.2e-44	short chain dehydrogenase
KR	PF08659	46 - 209	6.4e-09	KR domain
adh_short_C2	PF13561	51 - 289	3.1e-55	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45940 AT5G45940 AT5G45940
fragaria_vesca	FvH4_6g11030
malus_domestica	MD04G1162300.v1.1 MD10G1284100.v1.1 MD12G1174800.v1.1
prunus_persica	Prupe.4G057300_v2.0.a1 Prupe.4G057400_v2.0.a1 Prupe.6G282000_v2.0.a1
pyrus_communis	pycom04g14530 pycom10g23700 pycom10g23710
rosa_chinensis	RchiOBHm_Chr3g0462341
rosa_laevigata	RLG00000024865
rosa_multiflora	Rmu_sc0015540.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417570
rosa_rugosa	Rorug03G0056000
rosa_samantha	Rh3AG114600 Rh3BG117800 Rh3CG120600 Rh3DG119800
rosa_wichuraiana	Rw3G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	3 cut(s)	170, 376, 401
AcoI	YGGCCR	2 cut(s)	373, 838
AcuI	CTGAAG	1 cut(s)	768
AcvI	CACGTG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	2 cut(s)	162, 860
AgsI	TTSAA	3 cut(s)	122, 455, 511
AjnI	CCWGG	4 cut(s)	49, 228, 679, 766
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	118, 314, 423, 580, 643, 677
AluI	AGCT	6 cut(s)	118, 314, 423, 580, 643, 677
Alw26I	GTCTC	2 cut(s)	144, 722
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	4 cut(s)	207, 226, 373, 838
ApeKI	GCWGC	4 cut(s)	311, 528, 580, 760
AspLEI	GCGC	1 cut(s)	790
AspS9I	GGNCC	4 cut(s)	226, 468, 683, 693
AsuC2I	CCSGG	1 cut(s)	662
AsuHPI	GGTGA	2 cut(s)	286, 373
AvaII	GGWCC	3 cut(s)	468, 683, 693
BbrPI	CACGTG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	793
BbvI	GCAGC	4 cut(s)	323, 540, 567, 772
BccI	CCATC	2 cut(s)	5, 858
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	4 cut(s)	51, 230, 681, 768
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	662
BcoDI	GTCTC	2 cut(s)	144, 722
BfaI	CTAG	1 cut(s)	644
BisI	GCNGC	6 cut(s)	312, 376, 402, 529, 581, 761
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	6 cut(s)	313, 377, 403, 530, 582, 762
Bme1390I	CCNGG	5 cut(s)	51, 230, 662, 681, 768
Bme18I	GGWCC	3 cut(s)	468, 683, 693
BmgT120I	GGNCC	4 cut(s)	226, 468, 683, 693
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	5 cut(s)	51, 230, 662, 681, 768
BmsI	GCATC	5 cut(s)	232, 277, 666, 719, 805
BpiI	GAAGAC	1 cut(s)	793
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	662
Bsa29I	ATCGAT	1 cut(s)	438
BsaAI	YACGTR	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	600
BsaWI	WCCGGW	2 cut(s)	143, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 860
Bse118I	RCCGGY	1 cut(s)	836
BseBI	CCWGG	4 cut(s)	51, 230, 681, 768
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	4 cut(s)	247, 657, 846, 850
BseLI	CCNNNNNNNGG	2 cut(s)	162, 860
BseMII	CTCAG	4 cut(s)	59, 95, 203, 396
BseRI	GAGGAG	5 cut(s)	18, 162, 368, 737, 740
BseX3I	CGGCCG	1 cut(s)	373
BseXI	GCAGC	4 cut(s)	323, 540, 567, 772
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	4 cut(s)	209, 228, 375, 840
BshVI	ATCGAT	1 cut(s)	438
BsiEI	CGRYCG	1 cut(s)	376
BsiSI	CCGG	5 cut(s)	144, 156, 661, 707, 837
BslI	CCNNNNNNNGG	2 cut(s)	162, 860
BsmAI	GTCTC	2 cut(s)	144, 722
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	4 cut(s)	209, 228, 375, 840
Bsp143I	GATC	2 cut(s)	264, 316
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	3 cut(s)	170, 376, 401
BspANI	GGCC	4 cut(s)	209, 228, 375, 840
BspCNI	CTCAG	4 cut(s)	58, 94, 202, 397
BspDI	ATCGAT	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	695
BsrBI	CCGCTC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	836
BssAI	RCCGGY	1 cut(s)	836
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	2 cut(s)	264, 316
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	4 cut(s)	51, 230, 681, 768
Bst4CI	ACNGT	2 cut(s)	205, 274
Bst6I	CTCTTC	1 cut(s)	829
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	168, 504, 792
BstDEI	CTNAG	4 cut(s)	45, 81, 189, 405
BstF5I	GGATG	4 cut(s)	247, 657, 846, 850
BstHHI	GCGC	1 cut(s)	790
BstKTI	GATC	2 cut(s)	267, 319
BstMAI	GTCTC	2 cut(s)	144, 722
BstMBI	GATC	2 cut(s)	264, 316
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 311, 503, 614, 760, 815
BstNI	CCWGG	4 cut(s)	51, 230, 681, 768
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	5 cut(s)	49, 228, 660, 679, 766
BstV1I	GCAGC	4 cut(s)	323, 540, 567, 772
BstV2I	GAAGAC	1 cut(s)	793
BstXI	CCANNNNNNTGG	2 cut(s)	427, 857
BstZI	CGGCCG	1 cut(s)	373
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	4 cut(s)	209, 228, 375, 840
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	4 cut(s)	247, 657, 846, 850
Cac8I	GCNNGC	3 cut(s)	168, 504, 792
CaiI	CAGNNNCTG	1 cut(s)	580
CfoI	GCGC	1 cut(s)	790
Cfr10I	RCCGGY	1 cut(s)	836
Cfr13I	GGNCC	4 cut(s)	226, 468, 683, 693
ClaI	ATCGAT	1 cut(s)	438
CsiI	ACCWGGT	1 cut(s)	766
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	4 cut(s)	67, 493, 503, 517
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	4 cut(s)	45, 81, 189, 405
DpnI	GATC	2 cut(s)	266, 318
DpnII	GATC	2 cut(s)	264, 316
EaeI	YGGCCR	2 cut(s)	373, 838
EagI	CGGCCG	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	829
EarI	CTCTTC	1 cut(s)	829
EclXI	CGGCCG	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	600
Eco32I	GATATC	1 cut(s)	436
Eco47I	GGWCC	3 cut(s)	468, 683, 693
Eco52I	CGGCCG	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	768
Eco72I	CACGTG	1 cut(s)	248
EcoRII	CCWGG	4 cut(s)	49, 228, 679, 766
EcoRV	GATATC	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	4 cut(s)	70, 496, 506, 520
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FatI	CATG	4 cut(s)	66, 492, 502, 516
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	6 cut(s)	312, 376, 402, 529, 581, 761
FokI	GGATG	4 cut(s)	254, 644, 833, 837
Fsp4HI	GCNGC	6 cut(s)	312, 376, 402, 529, 581, 761
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	6 cut(s)	312, 376, 402, 529, 581, 761
HaeIII	GGCC	4 cut(s)	209, 228, 375, 840
HapII	CCGG	5 cut(s)	144, 156, 661, 707, 837
HhaI	GCGC	1 cut(s)	790
Hin1II	CATG	4 cut(s)	70, 496, 506, 520
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	41, 152, 703
HpaI	GTTAAC	1 cut(s)	394
HpaII	CCGG	5 cut(s)	144, 156, 661, 707, 837
HphI	GGTGA	2 cut(s)	286, 373
Hpy166II	GTNNAC	3 cut(s)	394, 414, 649
Hpy188I	TCNGA	5 cut(s)	10, 286, 576, 748, 814
Hpy188III	TCNNGA	4 cut(s)	191, 268, 622, 879
Hpy8I	GTNNAC	3 cut(s)	394, 414, 649
HpyAV	CCTTC	3 cut(s)	217, 220, 518
HpyCH4III	ACNGT	2 cut(s)	205, 274
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	8 cut(s)	200, 245, 305, 311, 339, 543, 734, 760
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 311, 503, 614, 760, 815
HpyF3I	CTNAG	4 cut(s)	45, 81, 189, 405
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	4 cut(s)	70, 496, 506, 520
HspAI	GCGC	1 cut(s)	788
Ksp22I	TGATCA	1 cut(s)	264
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	264, 316
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	4 cut(s)	323, 540, 567, 772
LweI	GCATC	5 cut(s)	232, 277, 666, 719, 805
MabI	ACCWGGT	1 cut(s)	766
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	3 cut(s)	139, 248, 633
MalI	GATC	2 cut(s)	266, 318
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	2 cut(s)	264, 316
MboII	GAAGA	3 cut(s)	443, 793, 816
MluCI	AATT	2 cut(s)	334, 537
MlyI	GAGTC	1 cut(s)	146
MseI	TTAA	1 cut(s)	393
MslI	CAYNNNNRTG	2 cut(s)	218, 855
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	5 cut(s)	144, 156, 661, 707, 837
MspR9I	CCNGG	5 cut(s)	51, 230, 662, 681, 768
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	4 cut(s)	51, 230, 681, 768
MwoI	GCNNNNNNNGC	6 cut(s)	206, 311, 503, 614, 760, 815
NciI	CCSGG	1 cut(s)	662
NdeII	GATC	2 cut(s)	264, 316
NlaIII	CATG	4 cut(s)	70, 496, 506, 520
NlaIV	GGNNCC	1 cut(s)	695
NmuCI	GTSAC	3 cut(s)	139, 248, 633
NspI	RCATGY	1 cut(s)	506
OliI	CACNNNNGTG	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	506
PctI	GAATGC	1 cut(s)	617
PfeI	GAWTC	2 cut(s)	41, 703
PflFI	GACNNNGTC	1 cut(s)	768
PfoI	TCCNGGA	1 cut(s)	679
PkrI	GCNGC	6 cut(s)	313, 377, 403, 530, 582, 762
PleI	GAGTC	1 cut(s)	146
PmaCI	CACGTG	1 cut(s)	248
PmlI	CACGTG	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	248
Psp6I	CCWGG	4 cut(s)	49, 228, 679, 766
PspCI	CACGTG	1 cut(s)	248
PspGI	CCWGG	4 cut(s)	49, 228, 679, 766
PspN4I	GGNNCC	1 cut(s)	695
PspPI	GGNCC	4 cut(s)	226, 468, 683, 693
PstNI	CAGNNNCTG	1 cut(s)	580
PsyI	GACNNNGTC	1 cut(s)	768
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	2 cut(s)	218, 855
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	6 cut(s)	312, 376, 402, 529, 581, 761
Sau3AI	GATC	2 cut(s)	264, 316
Sau96I	GGNCC	4 cut(s)	226, 468, 683, 693
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	5 cut(s)	51, 230, 662, 681, 768
SexAI	ACCWGGT	1 cut(s)	766
SfaNI	GCATC	5 cut(s)	232, 277, 666, 719, 805
SinI	GGWCC	3 cut(s)	468, 683, 693
SmiMI	CAYNNNNRTG	2 cut(s)	218, 855
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	2 cut(s)	334, 537
SsiI	CCGC	3 cut(s)	170, 376, 401
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	5 cut(s)	49, 228, 660, 679, 766
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	205, 274
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	2 cut(s)	327, 438
TasI	AATT	2 cut(s)	334, 537
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	2 cut(s)	378, 404
TfiI	GAWTC	2 cut(s)	41, 703
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TseFI	GTSAC	3 cut(s)	139, 248, 633
TseI	GCWGC	4 cut(s)	311, 528, 580, 760
Tsp45I	GTSAC	3 cut(s)	139, 248, 633
TspDTI	ATGAA	3 cut(s)	83, 481, 533
Tth111I	GACNNNGTC	1 cut(s)	768
VpaK11BI	GGWCC	3 cut(s)	468, 683, 693
XceI	RCATGY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.