Rh3CG120600

Nudix hydrolase 15, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0008221
Physical Location & Seq
Forward (+)
9730913 .. 9732637
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG120600.1

Sequence Viewer

Length: 591 bp
ATGGCTTATATAGTTCCTCCCTCTCTGTGCCAAACAGAGGATTTGGGAAGCGAAAATCTCCGAAGGCTTGCCAAACAGCTTCAGTTTTACAAACCACCCAAACCAATTGACGAAGTGGAGGAAAATATTGAGCATGGCATAAATGACGTGCCTTCTTCTGTAAAAATGAGGGAGAGAAGAGCAGCTGTTCTGATATGCCTCTTTGAAGATCCTGAGGATGAGCTAAGAGTTATTCTTACTAGAAGATCAATGAACTTGGCTTCACATCCAGGTGATGTAGCATTGCCAGGTGGGAAAATGGAGGAGGGAGATGAAGATGAATCTGCAACTGCACTGAGGGAAGCCATGGAAGAGATTGGCCTAGATTCTAGTCTAGTTCAAGTTGTTGCTCAACTAGAGTTCTTTTTATCTCAGCACTTGCTCACAGTTGTCCCTGTAATTGGACTCGTATCCCGGATAGAAGATTTCAAGCCTCTACTCAACGCTGACGAAGTTGATGCAATATTTGATGTCCCATTGGAGATGTTTCTCAAGGTCATGTTAATTCCCATTGCACTCAACAAGAAAATCATGATGCCAATCAGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
NUDIX

Protein Analysis

196

Amino Acids

21.92

Weight (kDa)

4.57

Isoelectric Point (pI)

67.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 59 - 143 1e-13 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 37, 440
AgsI TTSAA 3 cut(s) 206, 380, 469
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 2 cut(s) 268, 286
AluBI AGCT 3 cut(s) 79, 185, 223
AluI AGCT 3 cut(s) 79, 185, 223
AlwI GGATC 1 cut(s) 203
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 1 cut(s) 284
AxyI CCTNAGG 1 cut(s) 213
BbvI GCAGC 1 cut(s) 194
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BciT130I CCWGG 2 cut(s) 270, 288
BciVI GTATCC 1 cut(s) 460
BcnI CCSGG 1 cut(s) 454
BfaI CTAG 5 cut(s) 240, 362, 369, 374, 395
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 3 cut(s) 270, 288, 454
BmgBI CACGTC 1 cut(s) 148
BmrFI CCNGG 3 cut(s) 270, 288, 454
BmsI GCATC 2 cut(s) 487, 564
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 454
BsaBI GATNNNNATC 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 440
Bse21I CCTNAGG 1 cut(s) 213
Bse3DI GCAATG 2 cut(s) 281, 549
Bse8I GATNNNNATC 1 cut(s) 578
BseBI CCWGG 2 cut(s) 270, 288
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 223, 265
BseJI GATNNNNATC 1 cut(s) 578
BseLI CCNNNNNNNGG 2 cut(s) 37, 440
BseMI GCAATG 2 cut(s) 281, 549
BseMII CTCAG 3 cut(s) 204, 326, 425
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 315
BshFI GGCC 1 cut(s) 360
BsiSI CCGG 1 cut(s) 454
BslFI GGGAC 2 cut(s) 416, 497
BslI CCNNNNNNNGG 2 cut(s) 37, 440
BsmFI GGGAC 2 cut(s) 416, 497
BsnI GGCC 1 cut(s) 360
Bsp143I GATC 2 cut(s) 208, 245
Bsp19I CCATGG 1 cut(s) 345
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 3 cut(s) 205, 327, 424
BspHI TCATGA 1 cut(s) 570
BspPI GGATC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 281, 549
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 208, 245
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 270, 288
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 2 cut(s) 172, 345
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 4 cut(s) 213, 224, 335, 411
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 223, 265
BstKTI GATC 2 cut(s) 211, 248
BstMBI GATC 2 cut(s) 208, 245
BstNI CCWGG 2 cut(s) 270, 288
BstSCI CCNGG 3 cut(s) 268, 286, 452
BstV1I GCAGC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
Bsu36I CCTNAGG 1 cut(s) 213
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 345
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 223, 265
BtsIMutI CAGTG 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 69
CciI TCATGA 1 cut(s) 570
CviAII CATG 4 cut(s) 134, 346, 538, 571
CviJI RGCY 9 cut(s) 5, 67, 79, 185, 223, 260, 344, 360, 472
CviKI_1 RGCY 9 cut(s) 5, 67, 79, 185, 223, 260, 344, 360, 472
DdeI CTNAG 4 cut(s) 213, 224, 335, 411
DpnI GATC 2 cut(s) 210, 247
DpnII GATC 2 cut(s) 208, 245
Eam1104I CTCTTC 2 cut(s) 172, 345
EarI CTCTTC 2 cut(s) 172, 345
Eco130I CCWWGG 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 65
Eco81I CCTNAGG 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 268, 286
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 4 cut(s) 137, 349, 541, 574
FaiI YATR 8 cut(s) 9, 11, 135, 140, 196, 347, 539, 572
FaqI GGGAC 2 cut(s) 416, 497
FatI CATG 4 cut(s) 133, 345, 537, 570
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 230, 252
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 5 cut(s) 240, 362, 369, 374, 395
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 1 cut(s) 360
HapII CCGG 1 cut(s) 454
Hin1II CATG 4 cut(s) 137, 349, 541, 574
HinfI GANTC 3 cut(s) 320, 365, 444
HpaII CCGG 1 cut(s) 454
HphI GGTGA 1 cut(s) 284
Hpy188I TCNGA 2 cut(s) 62, 192
Hpy188III TCNNGA 2 cut(s) 212, 571
HpyAV CCTTC 2 cut(s) 57, 162
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 4 cut(s) 326, 332, 500, 554
HpyF3I CTNAG 4 cut(s) 213, 224, 335, 411
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 4 cut(s) 137, 349, 541, 574
Kzo9I GATC 2 cut(s) 208, 245
LguI GCTCTTC 1 cut(s) 172
LpnPI CCDG 7 cut(s) 225, 255, 273, 282, 300, 447, 467
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 487, 564
MaeI CTAG 5 cut(s) 240, 362, 369, 374, 395
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 210, 247
MboI GATC 2 cut(s) 208, 245
MboII GAAGA 7 cut(s) 147, 189, 218, 255, 326, 362, 473
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 1 cut(s) 208
MluCI AATT 3 cut(s) 105, 438, 543
MlyI GAGTC 1 cut(s) 438
MseI TTAA 2 cut(s) 542, 589
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 3 cut(s) 270, 288, 454
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 2 cut(s) 270, 288
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 1 cut(s) 345
NdeII GATC 2 cut(s) 208, 245
NlaIII CATG 4 cut(s) 137, 349, 541, 574
PagI TCATGA 1 cut(s) 570
PciSI GCTCTTC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 320, 365
PfoI TCCNGGA 1 cut(s) 452
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 268, 286
PspGI CCWGG 2 cut(s) 268, 286
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 2 cut(s) 542, 589
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 2 cut(s) 208, 245
SchI GAGTC 1 cut(s) 438
ScrFI CCNGG 3 cut(s) 270, 288, 454
SetI ASST 7 cut(s) 81, 150, 187, 225, 274, 292, 537
SfaNI GCATC 2 cut(s) 487, 564
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 3 cut(s) 105, 438, 543
SspI AATATT 2 cut(s) 127, 504
SspMI CTAG 5 cut(s) 240, 362, 369, 374, 395
StyD4I CCNGG 3 cut(s) 268, 286, 452
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 427
TaiI ACGT 1 cut(s) 150
TasI AATT 3 cut(s) 105, 438, 543
TfiI GAWTC 2 cut(s) 320, 365
Tru1I TTAA 2 cut(s) 542, 589
Tru9I TTAA 2 cut(s) 542, 589
TscAI CASTG 1 cut(s) 339
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 266, 327, 333
TspRI CASTG 1 cut(s) 339
XspI CTAG 5 cut(s) 240, 362, 369, 374, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.