FvH4_6g11030

Nudix hydrolase 15, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008221
Physical Location & Seq
Forward (+)
6601452 .. 6602878
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11030.t1

Sequence Viewer

Length: 771 bp
ATGGCTTGTATAGTTCCTCCTCCTCCTCTGTGCCAAACAGAGGATTTGGGAAGCGAAAATCTCCAAAGGCTTGCCAAGCAGCTTCAGTTTTACAAACCAACCAAAACAGCGGACAAAGTGGAGGAAAATGTCGAGCTTGACATAAATGAAGAGCCTTGTTATGTAAAAATGAGGGAAAGAAGGGCAGCTGTTCTGATATGCCTCTTTGAAGGTCCTGAGGGTGAGCTAAGAGTTATTCTTACTAGAAGATCAGTGAACTTGGCTTCACATCCAGGTGATGTAGCATTGCCAGGTGGGAAAATGGAGGAGGGAGATAAAGATGAATCTGCAACTGCACTGAGGGAAGCCATGGAAGAGATTGGCCTAGATTCTAGTCTAGTTCAAGTTGTAGCTAAACTAGAAATCTTTTTATCGCAGCACTTACTCACAGTTGTCCCTGTGATCGGACTAGTACCCCGGATAGAAGATTTCGAGCCTCTACTCAACACTGACGAAGTCGATGCTATATTTGATGTCCCACTGGAGATGTTTCTCAAGAAAGAAAATCACAGATTTGAGGAGAGAGAATGGAGTGGATGGAAATATGTTGTTCATCATTTCGAGTTCGAGTCCAAGCAAGGAGAGTTTCTAATATGGGGACTAACTGCAAGCATTCTGATTAGAGCTGCCTCTGTTATCTACCAGCAGCAATGTCCATTCTTCCAAACACATCTCCCTGACTTCCAAACTTTGCAAAAAACCTTGCATACTGTTGACTCTAATGTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
NUDIX

Protein Analysis

257

Amino Acids

29.1

Weight (kDa)

4.83

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 60 - 190 4e-14 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 453
AfiI CCNNNNNNNGG 2 cut(s) 40, 443
AgsI TTSAA 2 cut(s) 209, 383
AhlI ACTAGT 1 cut(s) 448
AjnI CCWGG 2 cut(s) 271, 289
AluBI AGCT 6 cut(s) 82, 136, 188, 226, 392, 665
AluI AGCT 6 cut(s) 82, 136, 188, 226, 392, 665
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 5 cut(s) 79, 185, 415, 665, 685
AspS9I GGNCC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 457
AsuHPI GGTGA 2 cut(s) 233, 287
AvaII GGWCC 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 216
BbvI GCAGC 5 cut(s) 91, 197, 427, 652, 697
BccI CCATC 1 cut(s) 570
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 2 cut(s) 273, 291
BcnI CCSGG 1 cut(s) 457
BcuI ACTAGT 1 cut(s) 448
BfaI CTAG 6 cut(s) 243, 365, 372, 377, 398, 449
BisI GCNGC 5 cut(s) 80, 186, 416, 666, 686
BlsI GCNGC 5 cut(s) 81, 187, 417, 667, 687
Bme1390I CCNGG 3 cut(s) 273, 291, 457
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 3 cut(s) 273, 291, 457
BmsI GCATC 1 cut(s) 490
BpmI CTGGAG 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 457
BsaJI CCNNGG 2 cut(s) 348, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 443
Bse1I ACTGG 1 cut(s) 525
Bse21I CCTNAGG 1 cut(s) 216
Bse3DI GCAATG 2 cut(s) 284, 695
BseBI CCWGG 2 cut(s) 273, 291
BseDI CCNNGG 2 cut(s) 348, 455
BseGI GGATG 2 cut(s) 268, 581
BseLI CCNNNNNNNGG 2 cut(s) 40, 443
BseMI GCAATG 2 cut(s) 284, 695
BseMII CTCAG 2 cut(s) 207, 329
BseNI ACTGG 1 cut(s) 525
BseRI GAGGAG 5 cut(s) 9, 12, 15, 320, 572
BseXI GCAGC 5 cut(s) 91, 197, 427, 652, 697
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 363
BsiSI CCGG 1 cut(s) 457
BslFI GGGAC 3 cut(s) 419, 500, 651
BslI CCNNNNNNNGG 2 cut(s) 40, 443
BsmFI GGGAC 3 cut(s) 419, 500, 651
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 248, 441
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 2 cut(s) 208, 330
BspQI GCTCTTC 1 cut(s) 144
BsrDI GCAATG 2 cut(s) 284, 695
BsrI ACTGG 1 cut(s) 525
BssECI CCNNGG 2 cut(s) 348, 455
BssMI GATC 2 cut(s) 248, 441
BssT1I CCWWGG 1 cut(s) 348
Bst2UI CCWGG 2 cut(s) 273, 291
Bst4CI ACNGT 2 cut(s) 430, 751
Bst6I CTCTTC 2 cut(s) 144, 348
BstC8I GCNNGC 2 cut(s) 72, 649
BstDEI CTNAG 3 cut(s) 216, 227, 338
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 268, 581
BstKTI GATC 2 cut(s) 251, 444
BstMBI GATC 2 cut(s) 248, 441
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 2 cut(s) 273, 291
BstSCI CCNGG 3 cut(s) 271, 289, 455
BstV1I GCAGC 5 cut(s) 91, 197, 427, 652, 697
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 268, 581
BtsIMutI CAGTG 4 cut(s) 258, 335, 486, 518
Cac8I GCNNGC 2 cut(s) 72, 649
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 452
CviAII CATG 2 cut(s) 349, 768
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 3 cut(s) 216, 227, 338
DpnI GATC 2 cut(s) 250, 443
DpnII GATC 2 cut(s) 248, 441
Eam1104I CTCTTC 2 cut(s) 144, 348
EarI CTCTTC 2 cut(s) 144, 348
Eco130I CCWWGG 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 68
Eco81I CCTNAGG 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 271, 289
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 2 cut(s) 352, 771
FaqI GGGAC 3 cut(s) 419, 500, 651
FatI CATG 2 cut(s) 348, 767
Fnu4HI GCNGC 5 cut(s) 80, 186, 416, 666, 686
FokI GGATG 2 cut(s) 255, 588
Fsp4HI GCNGC 5 cut(s) 80, 186, 416, 666, 686
FspBI CTAG 6 cut(s) 243, 365, 372, 377, 398, 449
GluI GCNGC 5 cut(s) 80, 186, 416, 666, 686
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 1 cut(s) 363
HapII CCGG 1 cut(s) 457
Hin1II CATG 2 cut(s) 352, 771
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HinfI GANTC 4 cut(s) 323, 368, 608, 755
HpaII CCGG 1 cut(s) 457
HphI GGTGA 2 cut(s) 233, 287
Hpy166II GTNNAC 2 cut(s) 256, 754
Hpy188I TCNGA 3 cut(s) 195, 446, 657
Hpy188III TCNNGA 2 cut(s) 215, 535
Hpy8I GTNNAC 2 cut(s) 256, 754
HpyAV CCTTC 2 cut(s) 174, 203
HpyCH4III ACNGT 2 cut(s) 430, 751
HpyCH4V TGCA 5 cut(s) 329, 335, 647, 733, 745
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 3 cut(s) 216, 227, 338
Hsp92II CATG 2 cut(s) 352, 771
Kzo9I GATC 2 cut(s) 248, 441
LguI GCTCTTC 1 cut(s) 144
Lsp1109I GCAGC 5 cut(s) 91, 197, 427, 652, 697
LweI GCATC 1 cut(s) 490
MaeI CTAG 6 cut(s) 243, 365, 372, 377, 398, 449
MalI GATC 2 cut(s) 250, 443
MboI GATC 2 cut(s) 248, 441
MboII GAAGA 5 cut(s) 161, 258, 365, 476, 691
MlyI GAGTC 2 cut(s) 617, 749
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 2 cut(s) 110, 188
MspI CCGG 1 cut(s) 457
MspR9I CCNGG 3 cut(s) 273, 291, 457
Mva1269I GAATGC 1 cut(s) 651
MvaI CCWGG 2 cut(s) 273, 291
MwoI GCNNNNNNNGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 457
NcoI CCATGG 1 cut(s) 348
NdeII GATC 2 cut(s) 248, 441
NlaIII CATG 2 cut(s) 352, 771
PciSI GCTCTTC 1 cut(s) 144
PctI GAATGC 1 cut(s) 651
PfeI GAWTC 2 cut(s) 323, 368
PflFI GACNNNGTC 1 cut(s) 494
PkrI GCNGC 5 cut(s) 81, 187, 417, 667, 687
PleI GAGTC 2 cut(s) 616, 749
PpsI GAGTC 2 cut(s) 616, 749
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 271, 289
PspGI CCWGG 2 cut(s) 271, 289
PspPI GGNCC 1 cut(s) 212
PspPPI RGGWCCY 1 cut(s) 212
PsyI GACNNNGTC 1 cut(s) 494
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
RseI CAYNNNNRTG 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 144
SatI GCNGC 5 cut(s) 80, 186, 416, 666, 686
Sau3AI GATC 2 cut(s) 248, 441
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 2 cut(s) 617, 749
ScrFI CCNGG 3 cut(s) 273, 291, 457
SfaNI GCATC 1 cut(s) 490
SinI GGWCC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SpeI ACTAGT 1 cut(s) 448
SsiI CCGC 1 cut(s) 110
SspMI CTAG 6 cut(s) 243, 365, 372, 377, 398, 449
StyD4I CCNGG 3 cut(s) 271, 289, 455
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 430, 751
TaqI TCGA 5 cut(s) 132, 471, 498, 600, 606
TfiI GAWTC 2 cut(s) 323, 368
TscAI CASTG 4 cut(s) 258, 342, 493, 525
TseI GCWGC 5 cut(s) 79, 185, 415, 665, 685
TspDTI ATGAA 3 cut(s) 162, 336, 581
TspRI CASTG 4 cut(s) 258, 342, 493, 525
Tth111I GACNNNGTC 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 212
XspI CTAG 6 cut(s) 243, 365, 372, 377, 398, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.