Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008221

Physical Location & Seq

Genomic Coordinates Forward (+)

2741011 .. 2742856

Gene Structure 1846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G057300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGATTCGGACAGCGTTGAACGAAGGCTCCACACCTTAGCACAACATTTCATCGCCGATAAAGCAGTCAAACCGGGTCCGGAAGCTACTGCCAGCACCACCTGTTGGAGCAAACGAGCGGCGGTTCTGGTGTGTTTGTTTAAAGGGGAAGAAGACGACCTGCACGTCATTCTCACAAGGCGAGCCTCAACTCTCTCTTCTAACCCTGGCGACGTTGCGCTCCCCGGTGGGAAAAGAGAGGAAGGGGATGCTGATGACGTGGACACTGCCCTCCGGGAGGCCAAGGAGGAGATCGGCTTGGACCCGTCCCTAGTCAAGGTTATCACCGTTTTTCAACCCAGTTTAACCAAGAATGGTATGACTGTGGTTCCTGTAATTGGCCTACTTTCAGACTTAAAAGCATTTAGTCCCGCTCCAAATGCTGCAGAAGTGGAATCAATTTTTTATGTTCCCTTAGAAATGTTTCTCAAGGATGAGAACAGAAGAGCGGAGGAGAAAGAATGGATGGGACACAAGTATCTGTTACATTGCTTTAACTATGAAGCAGATGGTAAAGAGTATGTCATCTGGGCTTTCACTGCTGGCATTCTGATAAGGGTTGCTTCAATTGTGTACCAAAGGCAGCCGGCATTTCTCGAACAGAGGCCCAAATTCTGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000210 GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008893 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044273 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

221

Amino Acids

24.58

Weight (kDa)

5.33

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45940 AT5G45940 AT5G45940
fragaria_vesca	FvH4_6g11030
malus_domestica	MD04G1162300.v1.1 MD10G1284100.v1.1 MD12G1174800.v1.1
prunus_persica	Prupe.4G057300_v2.0.a1 Prupe.4G057400_v2.0.a1 Prupe.6G282000_v2.0.a1
pyrus_communis	pycom04g14530 pycom10g23700 pycom10g23710
rosa_chinensis	RchiOBHm_Chr3g0462341
rosa_laevigata	RLG00000024865
rosa_multiflora	Rmu_sc0015540.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417570
rosa_rugosa	Rorug03G0056000
rosa_samantha	Rh3AG114600 Rh3BG117800 Rh3CG120600 Rh3DG119800
rosa_wichuraiana	Rw3G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	168
AccB7I	CCANNNNNTGG	2 cut(s)	105, 654
AccBSI	CCGCTC	3 cut(s)	119, 413, 488
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	4 cut(s)	119, 122, 411, 488
AcsI	RAATTY	1 cut(s)	650
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	5 cut(s)	105, 277, 316, 377, 654
AgsI	TTSAA	3 cut(s)	20, 335, 606
AjiI	CACGTC	2 cut(s)	166, 259
AjnI	CCWGG	1 cut(s)	205
AloI	GAACNNNNNNTCC	2 cut(s)	12, 44
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	3 cut(s)	279, 379, 644
ApeKI	GCWGC	2 cut(s)	422, 622
ApoI	RAATTY	1 cut(s)	650
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	3 cut(s)	77, 301, 645
AsuC2I	CCSGG	3 cut(s)	75, 225, 275
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	77, 301
BaeI	ACNNNNGTAYC	2 cut(s)	500, 533
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	409, 634
BccI	CCATC	2 cut(s)	499, 542
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	3 cut(s)	75, 225, 275
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	168
BisI	GCNGC	3 cut(s)	120, 423, 623
BlsI	GCNGC	3 cut(s)	121, 424, 624
Bme1390I	CCNGG	4 cut(s)	75, 207, 225, 275
Bme18I	GGWCC	2 cut(s)	77, 301
BmgBI	CACGTC	2 cut(s)	166, 259
BmgT120I	GGNCC	3 cut(s)	77, 301, 645
BmiI	GGNNCC	4 cut(s)	29, 78, 303, 369
BmrFI	CCNGG	4 cut(s)	75, 207, 225, 275
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	3 cut(s)	75, 225, 275
BsaJI	CCNNGG	3 cut(s)	205, 223, 282
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 277, 316, 377, 654
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	526
BseAI	TCCGGA	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	205, 223, 282
BseGI	GGATG	3 cut(s)	253, 478, 510
BseLI	CCNNNNNNNGG	5 cut(s)	105, 277, 316, 377, 654
BseMI	GCAATG	1 cut(s)	526
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	2 cut(s)	302, 506
BseXI	GCAGC	2 cut(s)	409, 634
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	3 cut(s)	281, 381, 646
BsiSI	CCGG	5 cut(s)	74, 80, 225, 274, 626
BslFI	GGGAC	3 cut(s)	292, 393, 522
BslI	CCNNNNNNNGG	5 cut(s)	105, 277, 316, 377, 654
BsmFI	GGGAC	3 cut(s)	292, 393, 522
BsmI	GAATGC	1 cut(s)	585
BsnI	GGCC	3 cut(s)	281, 381, 646
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	4 cut(s)	119, 122, 411, 488
BspANI	GGCC	3 cut(s)	281, 381, 646
BspEI	TCCGGA	1 cut(s)	79
BspLI	GGNNCC	4 cut(s)	29, 78, 303, 369
BspMAI	CTGCAG	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	478
BsrBI	CCGCTC	3 cut(s)	119, 413, 488
BsrDI	GCAATG	1 cut(s)	526
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	339
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	3 cut(s)	205, 223, 282
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	328, 364
Bst6I	CTCTTC	2 cut(s)	202, 478
BstC8I	GCNNGC	4 cut(s)	94, 183, 583, 627
BstDEI	CTNAG	2 cut(s)	37, 454
BstENI	CCTNNNNNAGG	2 cut(s)	275, 314
BstF5I	GGATG	3 cut(s)	253, 478, 510
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 419, 578
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	4 cut(s)	73, 205, 223, 273
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	409, 634
BstV2I	GAAGAC	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	281, 381, 646
BtgZI	GCGATG	1 cut(s)	37
BtrI	CACGTC	2 cut(s)	166, 259
BtsCI	GGATG	3 cut(s)	253, 478, 510
BtsI	GCAGTG	2 cut(s)	264, 576
BtsIMutI	CAGTG	2 cut(s)	264, 576
BveI	ACCTGC	1 cut(s)	168
Cac8I	GCNNGC	4 cut(s)	94, 183, 583, 627
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	3 cut(s)	77, 301, 645
Csp6I	GTAC	1 cut(s)	613
CviJI	RGCY	9 cut(s)	28, 86, 185, 281, 297, 381, 572, 625, 646
CviKI_1	RGCY	9 cut(s)	28, 86, 185, 281, 297, 381, 572, 625, 646
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	2 cut(s)	37, 454
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
DraI	TTTAAA	1 cut(s)	142
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Eam1104I	CTCTTC	2 cut(s)	202, 478
EarI	CTCTTC	2 cut(s)	202, 478
Eco130I	CCWWGG	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	77, 301
EcoNI	CCTNNNNNAGG	2 cut(s)	275, 314
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaiI	YATR	4 cut(s)	359, 447, 540, 561
FalI	AAGNNNNNCTT	2 cut(s)	586, 618
FaqI	GGGAC	3 cut(s)	292, 393, 522
FauI	CCCGC	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	120, 423, 623
FokI	GGATG	3 cut(s)	260, 485, 517
Fsp4HI	GCNGC	3 cut(s)	120, 423, 623
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	120, 423, 623
HaeIII	GGCC	3 cut(s)	281, 381, 646
HapII	CCGG	5 cut(s)	74, 80, 225, 274, 626
HhaI	GCGC	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	2 cut(s)	5, 434
HpaII	CCGG	5 cut(s)	74, 80, 225, 274, 626
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	2 cut(s)	262, 613
Hpy188I	TCNGA	3 cut(s)	10, 391, 591
Hpy188III	TCNNGA	3 cut(s)	80, 635, 655
Hpy8I	GTNNAC	2 cut(s)	262, 613
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	18, 236
HpyCH4III	ACNGT	2 cut(s)	328, 364
HpyCH4IV	ACGT	3 cut(s)	165, 213, 258
HpyCH4V	TGCA	2 cut(s)	163, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 419, 578
HpyF3I	CTNAG	2 cut(s)	37, 454
HpySE526I	ACGT	3 cut(s)	165, 213, 258
HspAI	GCGC	1 cut(s)	218
Kpn2I	TCCGGA	1 cut(s)	79
KroI	GCCGGC	1 cut(s)	625
KroNI	GCCGGC	1 cut(s)	627
Kzo9I	GATC	1 cut(s)	291
LguI	GCTCTTC	1 cut(s)	478
LmnI	GCTCC	4 cut(s)	33, 108, 225, 418
Lsp1109I	GCAGC	2 cut(s)	409, 634
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	3 cut(s)	165, 213, 258
MaeIII	GTNAC	1 cut(s)	522
MalI	GATC	1 cut(s)	293
MbiI	CCGCTC	3 cut(s)	119, 413, 488
MboI	GATC	1 cut(s)	291
MboII	GAAGA	4 cut(s)	161, 164, 189, 495
MfeI	CAATTG	1 cut(s)	606
MluCI	AATT	5 cut(s)	375, 438, 606, 650, 658
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	7 cut(s)	196, 232, 271, 280, 281, 484, 636
MroI	TCCGGA	1 cut(s)	79
MroNI	GCCGGC	1 cut(s)	625
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	4 cut(s)	141, 344, 395, 534
MspI	CCGG	5 cut(s)	74, 80, 225, 274, 626
MspR9I	CCNGG	4 cut(s)	75, 207, 225, 275
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	62, 419, 578
NaeI	GCCGGC	1 cut(s)	627
NciI	CCSGG	3 cut(s)	75, 225, 275
NdeII	GATC	1 cut(s)	291
NgoMIV	GCCGGC	1 cut(s)	625
NlaIV	GGNNCC	4 cut(s)	29, 78, 303, 369
PciSI	GCTCTTC	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	1 cut(s)	585
PdiI	GCCGGC	1 cut(s)	627
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	5, 434
PflMI	CCANNNNNTGG	2 cut(s)	105, 654
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	121, 424, 624
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	4 cut(s)	29, 78, 303, 369
PspPI	GGNCC	3 cut(s)	77, 301, 645
PstI	CTGCAG	1 cut(s)	427
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	4 cut(s)	141, 344, 395, 534
SatI	GCNGC	3 cut(s)	120, 423, 623
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	3 cut(s)	77, 301, 645
ScrFI	CCNGG	4 cut(s)	75, 207, 225, 275
SetI	ASST	8 cut(s)	38, 88, 104, 162, 168, 216, 261, 321
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	2 cut(s)	77, 301
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	5 cut(s)	375, 438, 606, 650, 658
SsiI	CCGC	4 cut(s)	119, 122, 411, 488
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	4 cut(s)	73, 205, 223, 273
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	328, 364
TaiI	ACGT	3 cut(s)	168, 216, 261
TaqI	TCGA	1 cut(s)	636
TasI	AATT	5 cut(s)	375, 438, 606, 650, 658
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	5, 434
Tru1I	TTAA	4 cut(s)	141, 344, 395, 534
Tru9I	TTAA	4 cut(s)	141, 344, 395, 534
TscAI	CASTG	2 cut(s)	271, 583
TseI	GCWGC	2 cut(s)	422, 622
TspDTI	ATGAA	2 cut(s)	40, 555
TspRI	CASTG	2 cut(s)	271, 583
Van91I	CCANNNNNTGG	2 cut(s)	105, 654
VpaK11BI	GGWCC	2 cut(s)	77, 301
XagI	CCTNNNNNAGG	2 cut(s)	275, 314
XapI	RAATTY	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.