Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008221

Physical Location & Seq

Genomic Coordinates Reverse (-)

37434217 .. 37435483

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1284100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGTTCTGCTGAACTAAGACTTCAAACTCTAGCACAACATTTCAGACCCGAAGAATCAGTCAAACCACCTCCACCACCTACCGGTTCCGCCTCCTCCGATTCAACAACCAAACGGGCGGCGGTTCTGGTGTGTCTGTTCAAAGGGGATGACGGCGAGCTGCGCGTCATTCTCACGAAACGATCTTCATCTCTGTCTTCCAGCCCTGGCGACGTTGCGCTCCCCGGTGGGAAAAGAGACGAAGCGGATGCTGATGACGTAGACACCGCCCTCCGGGAGGCCAAGGAGGAGATCGGCCTGGACCCTTCCCTAGTCAACGTCGTCACCGTTCTCGACCACATTGTAAACAAGCATGGTGTGACTGTGGTTCCGGTAATTGGCCTACTTTCTGACATAAAAGCATTTAGTCCGGCTCCAAATGCTGCAGAAGTGGAGGCAATTTTTGATGCTCCTTTAGAAATGTTTCTCAAGGATGAGAAGAGGAGAGAGGAGGAGAGAGAATGGATGGGAGACAAGTATCTCTTACATTACTTCGACTTTGAAGCAGATGATGGTAAAGAGTATGTCATATGGGCCCTAACTGCTGCCCTTCTGATAAGCGCTGCTTCAGCAGTGTATGAGCGGCCGCCAGCGTTTCTCGAGCGGAGGCCAAAGTTCTGGACGAGTGGCCAGGGAGCACCACCATGCCCTAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000210 GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006195 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008893 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009154 GO:0009165 GO:0009166 GO:0009259 GO:0009260 GO:0009261 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0033865 GO:0033866 GO:0033869 GO:0033875 GO:0034030 GO:0034031 GO:0034032 GO:0034033 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044273 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046434 GO:0046483 GO:0046700 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:2001293 GO:2001294

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

233

Amino Acids

25.37

Weight (kDa)

4.91

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	38 - 122	7.7e-12	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45940 AT5G45940 AT5G45940
fragaria_vesca	FvH4_6g11030
malus_domestica	MD04G1162300.v1.1 MD10G1284100.v1.1 MD12G1174800.v1.1
prunus_persica	Prupe.4G057300_v2.0.a1 Prupe.4G057400_v2.0.a1 Prupe.6G282000_v2.0.a1
pyrus_communis	pycom04g14530 pycom10g23700 pycom10g23710
rosa_chinensis	RchiOBHm_Chr3g0462341
rosa_laevigata	RLG00000024865
rosa_multiflora	Rmu_sc0015540.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417570
rosa_rugosa	Rorug03G0056000
rosa_samantha	Rh3AG114600 Rh3BG117800 Rh3CG120600 Rh3DG119800
rosa_wichuraiana	Rw3G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	622, 643
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	1 cut(s)	165
AciI	CCGC	8 cut(s)	90, 119, 122, 245, 267, 622, 626, 643
AcoI	YGGCCR	2 cut(s)	623, 667
AcuI	CTGAAG	1 cut(s)	591
AfeI	AGCGCT	1 cut(s)	601
AfiI	CCNNNNNNNGG	4 cut(s)	83, 273, 277, 377
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	26, 105, 142, 542
AjnI	CCWGG	3 cut(s)	205, 297, 669
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	2 cut(s)	231, 504
Ama87I	CYCGRG	1 cut(s)	638
Aor51HI	AGCGCT	1 cut(s)	601
AoxI	GGCC	7 cut(s)	279, 295, 379, 573, 623, 647, 667
ApaI	GGGCCC	1 cut(s)	577
ApeKI	GCWGC	4 cut(s)	160, 422, 584, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AsiGI	ACCGGT	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	462
AspA2I	CCTAGG	1 cut(s)	689
AspLEI	GCGC	3 cut(s)	165, 220, 602
AspS9I	GGNCC	3 cut(s)	301, 573, 574
AsuC2I	CCSGG	2 cut(s)	225, 275
AsuHPI	GGTGA	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	301
AvrII	CCTAGG	1 cut(s)	689
BaeGI	GKGCMC	1 cut(s)	577
BalI	TGGCCA	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	577
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	679
BbvI	GCAGC	4 cut(s)	147, 409, 571, 589
BccI	CCATC	2 cut(s)	499, 545
BceAI	ACGGC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	3 cut(s)	207, 299, 671
BcnI	CCSGG	2 cut(s)	225, 275
BcoDI	GTCTC	2 cut(s)	231, 504
BfaI	CTAG	3 cut(s)	32, 311, 690
BfmI	CTRYAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	603
BisI	GCNGC	7 cut(s)	120, 161, 423, 585, 603, 623, 626
BlnI	CCTAGG	1 cut(s)	689
BlsI	GCNGC	7 cut(s)	121, 162, 424, 586, 604, 624, 627
Bme1390I	CCNGG	5 cut(s)	207, 225, 275, 299, 671
Bme18I	GGWCC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	3 cut(s)	301, 573, 574
BmiI	GGNNCC	5 cut(s)	88, 303, 369, 414, 575
BmrFI	CCNGG	5 cut(s)	207, 225, 275, 299, 671
BmsI	GCATC	2 cut(s)	238, 436
BpiI	GAAGAC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	2 cut(s)	225, 275
BsaBI	GATNNNNATC	1 cut(s)	187
BsaJI	CCNNGG	5 cut(s)	205, 223, 282, 670, 689
BsaWI	WCCGGW	2 cut(s)	83, 370
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 273, 277, 377
Bse118I	RCCGGY	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	187
BseBI	CCWGG	3 cut(s)	207, 299, 671
BseDI	CCNNGG	5 cut(s)	205, 223, 282, 670, 689
BseGI	GGATG	4 cut(s)	154, 253, 478, 510
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	4 cut(s)	83, 273, 277, 377
BseRI	GAGGAG	5 cut(s)	85, 302, 496, 503, 506
BseSI	GKGCMC	1 cut(s)	577
BseX3I	CGGCCG	1 cut(s)	623
BseXI	GCAGC	4 cut(s)	147, 409, 571, 589
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	626
BshFI	GGCC	7 cut(s)	281, 297, 381, 575, 625, 649, 669
BshTI	ACCGGT	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	626
BsiHKAI	GWGCWC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	5 cut(s)	84, 225, 274, 371, 410
BslI	CCNNNNNNNGG	4 cut(s)	83, 273, 277, 377
BsmAI	GTCTC	2 cut(s)	231, 504
BsmBI	CGTCTC	1 cut(s)	231
BsnI	GGCC	7 cut(s)	281, 297, 381, 575, 625, 649, 669
BsoBI	CYCGRG	1 cut(s)	638
Bsp120I	GGGCCC	1 cut(s)	573
Bsp1286I	GDGCHC	2 cut(s)	577, 679
Bsp143I	GATC	2 cut(s)	182, 291
BspACI	CCGC	8 cut(s)	90, 119, 122, 245, 267, 622, 626, 643
BspANI	GGCC	7 cut(s)	281, 297, 381, 575, 625, 649, 669
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	5 cut(s)	88, 303, 369, 414, 575
BspMAI	CTGCAG	1 cut(s)	427
BsrBI	CCGCTC	2 cut(s)	622, 643
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	5 cut(s)	205, 223, 282, 670, 689
BssMI	GATC	2 cut(s)	182, 291
BssT1I	CCWWGG	2 cut(s)	282, 689
Bst2UI	CCWGG	3 cut(s)	207, 299, 671
Bst4CI	ACNGT	2 cut(s)	328, 364
Bst6I	CTCTTC	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	158, 630
BstDEI	CTNAG	1 cut(s)	17
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	4 cut(s)	154, 253, 478, 510
BstFNI	CGCG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	603
BstHHI	GCGC	3 cut(s)	165, 220, 602
BstKTI	GATC	2 cut(s)	185, 294
BstMAI	GTCTC	2 cut(s)	231, 504
BstMBI	GATC	2 cut(s)	182, 291
BstMCI	CGRYCG	1 cut(s)	626
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 419, 581, 608
BstNI	CCWGG	3 cut(s)	207, 299, 671
BstSCI	CCNGG	5 cut(s)	205, 223, 273, 297, 669
BstSFI	CTRYAG	1 cut(s)	423
BstSLI	GKGCMC	1 cut(s)	577
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	147, 409, 571, 589
BstV2I	GAAGAC	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	657
BstZI	CGGCCG	1 cut(s)	623
BsuRI	GGCC	7 cut(s)	281, 297, 381, 575, 625, 649, 669
BtsCI	GGATG	4 cut(s)	154, 253, 478, 510
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	2 cut(s)	158, 630
CciNI	GCGGCCGC	1 cut(s)	623
CfoI	GCGC	3 cut(s)	165, 220, 602
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	3 cut(s)	301, 573, 574
CseI	GACGC	1 cut(s)	154
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	2 cut(s)	353, 684
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	2 cut(s)	184, 293
DpnII	GATC	2 cut(s)	182, 291
EaeI	YGGCCR	2 cut(s)	623, 667
EagI	CGGCCG	1 cut(s)	623
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
EciI	GGCGGA	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	623
Eco130I	CCWWGG	2 cut(s)	282, 689
Eco24I	GRGCYC	1 cut(s)	577
Eco47I	GGWCC	1 cut(s)	301
Eco47III	AGCGCT	1 cut(s)	601
Eco52I	CGGCCG	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	638
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	574
EcoRII	CCWGG	3 cut(s)	205, 297, 669
EcoT14I	CCWWGG	2 cut(s)	282, 689
EcoT38I	GRGCYC	1 cut(s)	577
ErhI	CCWWGG	2 cut(s)	282, 689
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	2 cut(s)	356, 687
FaiI	YATR	7 cut(s)	354, 395, 564, 569, 571, 618, 685
FalI	AAGNNNNNCTT	4 cut(s)	506, 538, 589, 621
FatI	CATG	2 cut(s)	352, 683
FauNDI	CATATG	1 cut(s)	569
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	7 cut(s)	120, 161, 423, 585, 603, 623, 626
FokI	GGATG	4 cut(s)	161, 260, 485, 517
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	7 cut(s)	120, 161, 423, 585, 603, 623, 626
FspBI	CTAG	3 cut(s)	32, 311, 690
GlaI	GCGC	3 cut(s)	164, 219, 601
GluI	GCNGC	7 cut(s)	120, 161, 423, 585, 603, 623, 626
HaeII	RGCGCY	1 cut(s)	603
HaeIII	GGCC	7 cut(s)	281, 297, 381, 575, 625, 649, 669
HapII	CCGG	5 cut(s)	84, 225, 274, 371, 410
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	3 cut(s)	165, 220, 602
Hin1II	CATG	2 cut(s)	356, 687
Hin6I	GCGC	3 cut(s)	163, 218, 600
HinP1I	GCGC	3 cut(s)	163, 218, 600
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	56, 101
HpaII	CCGG	5 cut(s)	84, 225, 274, 371, 410
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	3 cut(s)	262, 316, 346
Hpy188I	TCNGA	4 cut(s)	47, 100, 391, 594
Hpy188III	TCNNGA	4 cut(s)	175, 332, 638, 658
Hpy8I	GTNNAC	3 cut(s)	262, 316, 346
Hpy99I	CGWCG	2 cut(s)	215, 323
HpyAV	CCTTC	2 cut(s)	315, 599
HpyCH4III	ACNGT	2 cut(s)	328, 364
HpyCH4IV	ACGT	3 cut(s)	213, 258, 318
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 419, 581, 608
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	3 cut(s)	213, 258, 318
Hsp92II	CATG	2 cut(s)	356, 687
HspAI	GCGC	3 cut(s)	163, 218, 600
Kzo9I	GATC	2 cut(s)	182, 291
LmnI	GCTCC	4 cut(s)	225, 418, 454, 674
Lsp1109I	GCAGC	4 cut(s)	147, 409, 571, 589
LweI	GCATC	2 cut(s)	238, 436
MaeI	CTAG	3 cut(s)	32, 311, 690
MaeII	ACGT	3 cut(s)	213, 258, 318
MaeIII	GTNAC	2 cut(s)	322, 358
MalI	GATC	2 cut(s)	184, 293
MbiI	CCGCTC	2 cut(s)	622, 643
MboI	GATC	2 cut(s)	182, 291
MboII	GAAGA	4 cut(s)	65, 177, 189, 490
MhlI	GDGCHC	2 cut(s)	577, 679
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	2 cut(s)	375, 438
MluNI	TGGCCA	1 cut(s)	669
Mox20I	TGGCCA	1 cut(s)	669
MroXI	GAANNNNTTC	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	1 cut(s)	697
MslI	CAYNNNNRTG	1 cut(s)	682
Msp20I	TGGCCA	1 cut(s)	669
MspI	CCGG	5 cut(s)	84, 225, 274, 371, 410
MspR9I	CCNGG	5 cut(s)	207, 225, 275, 299, 671
MvaI	CCWGG	3 cut(s)	207, 299, 671
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	4 cut(s)	162, 419, 581, 608
NciI	CCSGG	2 cut(s)	225, 275
NdeI	CATATG	1 cut(s)	569
NdeII	GATC	2 cut(s)	182, 291
NlaIII	CATG	2 cut(s)	356, 687
NlaIV	GGNNCC	5 cut(s)	88, 303, 369, 414, 575
NmuCI	GTSAC	2 cut(s)	322, 358
NotI	GCGGCCGC	1 cut(s)	623
PaeR7I	CTCGAG	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	56, 101
PfoI	TCCNGGA	1 cut(s)	273
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	7 cut(s)	121, 162, 424, 586, 604, 624, 627
Psp6I	CCWGG	3 cut(s)	205, 297, 669
PspGI	CCWGG	3 cut(s)	205, 297, 669
PspN4I	GGNNCC	5 cut(s)	88, 303, 369, 414, 575
PspOMI	GGGCCC	1 cut(s)	573
PspPI	GGNCC	3 cut(s)	301, 573, 574
PstI	CTGCAG	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	682
SaqAI	TTAA	1 cut(s)	697
SatI	GCNGC	7 cut(s)	120, 161, 423, 585, 603, 623, 626
Sau3AI	GATC	2 cut(s)	182, 291
Sau96I	GGNCC	3 cut(s)	301, 573, 574
ScrFI	CCNGG	5 cut(s)	207, 225, 275, 299, 671
SduI	GDGCHC	2 cut(s)	577, 679
SetI	ASST	7 cut(s)	73, 82, 162, 216, 261, 321, 695
SfaNI	GCATC	2 cut(s)	238, 436
SfcI	CTRYAG	1 cut(s)	423
Sfr274I	CTCGAG	1 cut(s)	638
SinI	GGWCC	1 cut(s)	301
SlaI	CTCGAG	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	682
SmlI	CTYRAG	2 cut(s)	467, 638
SmoI	CTYRAG	2 cut(s)	467, 638
Sse9I	AATT	2 cut(s)	375, 438
SsiI	CCGC	8 cut(s)	90, 119, 122, 245, 267, 622, 626, 643
SspMI	CTAG	3 cut(s)	32, 311, 690
StyD4I	CCNGG	5 cut(s)	205, 223, 273, 297, 669
StyI	CCWWGG	2 cut(s)	282, 689
TaaI	ACNGT	2 cut(s)	328, 364
TaiI	ACGT	3 cut(s)	216, 261, 321
TaqI	TCGA	3 cut(s)	333, 534, 639
TasI	AATT	2 cut(s)	375, 438
TauI	GCSGC	3 cut(s)	122, 625, 628
TfiI	GAWTC	2 cut(s)	56, 101
Tru1I	TTAA	1 cut(s)	697
Tru9I	TTAA	1 cut(s)	697
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	2 cut(s)	322, 358
TseI	GCWGC	4 cut(s)	160, 422, 584, 602
Tsp45I	GTSAC	2 cut(s)	322, 358
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	618
VpaK11BI	GGWCC	1 cut(s)	301
XagI	CCTNNNNNAGG	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	638
XmaJI	CCTAGG	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	3 cut(s)	32, 311, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.