Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008221

Physical Location & Seq

Genomic Coordinates Reverse (-)

17414861 .. 17416116

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTAGCATAGAGGGTTGGGGAAGAAGCCAAACTCTACATAGCCTTGCCAAGCAGCTTGAGTTTTACAAACCTCCCTCCGCACCGGATAAATCCGAGGATTATAATGAAAGCGATACATGCTTAAACTCCGGTATAAGCTTCAACTCTTTAGCAGCCACAAATGAAAAGTGTTCTTGTGTCAAGTTGAGATTGAGAGAGAGAAGAGCGGCTGTACTGGTATGCATCTTTGAGGGTCCTGAGGGTGAGCTAAGAGTTATTCTTACTAGGAGATCCATGAATTTGACATCACACCCAGGAGATGTAGCATTGCCGGGAGGAAAAATGGAGAAGGAAGATGCAGATGAATCTGCAACAGCACAAAGGGAAGCCATGGAAGAGATTGGACTGAATCCAAGTCTAGTTCAAGTTGTTGCAAAGCTAGAGTGCTTTATGTCCCAGCATTTGGTCTCCGTTGTCCCGGTGATAGGGCTAGTAGCTAGAATTGAAGATTTCAAGCCTGTACTCAGCGCCGACGAAGTTGACGCCATTTTTGATGTTCCATTGGAGATGTTTCTCAAGAATGATAATCACAGATTTGAGGAGAGAGAATGGATGGGTTGGAAGTATATTCTCCATCTTTTCGATTTTGAATCAGAGCAGGGGCCGTTTCTAATTTGGGGACTAACTGCAAGCATTTTAATTCGAGCAGCCGCTGTTATCTACCAGCAGCCTCCATTCTTCCAAGGACACAGCCTCCCTGACTTCCAAGAATTGCAAAGAGCCTTGCATAGTGTGCATAATGTTAAACACGATAATAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

NUDIX

Protein Analysis

269

Amino Acids

30.2

Weight (kDa)

5.15

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45940 AT5G45940 AT5G45940
fragaria_vesca	FvH4_6g11030
malus_domestica	MD04G1162300.v1.1 MD10G1284100.v1.1 MD12G1174800.v1.1
prunus_persica	Prupe.4G057300_v2.0.a1 Prupe.4G057400_v2.0.a1 Prupe.6G282000_v2.0.a1
pyrus_communis	pycom04g14530 pycom10g23700 pycom10g23710
rosa_chinensis	RchiOBHm_Chr3g0462341
rosa_laevigata	RLG00000024865
rosa_multiflora	Rmu_sc0015540.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417570
rosa_rugosa	Rorug03G0056000
rosa_samantha	Rh3AG114600 Rh3BG117800 Rh3CG120600 Rh3DG119800
rosa_wichuraiana	Rw3G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AccB7I	CCANNNNNTGG	1 cut(s)	445
AccBSI	CCGCTC	1 cut(s)	209
AciI	CCGC	3 cut(s)	81, 209, 693
AclWI	GGATC	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	216, 504
AfiI	CCNNNNNNNGG	2 cut(s)	445, 467
AgsI	TTSAA	5 cut(s)	145, 407, 488, 496, 632
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	5 cut(s)	58, 141, 250, 421, 479
AluI	AGCT	5 cut(s)	58, 141, 250, 421, 479
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	1 cut(s)	644
ApeKI	GCWGC	4 cut(s)	55, 155, 689, 709
ApoI	RAATTY	1 cut(s)	280
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspLEI	GCGC	1 cut(s)	512
AspS9I	GGNCC	2 cut(s)	236, 644
AsuC2I	CCSGG	2 cut(s)	315, 461
AsuHPI	GGTGA	2 cut(s)	257, 475
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	236
AxyI	CCTNAGG	1 cut(s)	240
BbvI	GCAGC	4 cut(s)	67, 167, 701, 721
BccI	CCATC	2 cut(s)	589, 624
BceAI	ACGGC	1 cut(s)	631
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	2 cut(s)	315, 461
BcoDI	GTCTC	1 cut(s)	454
BfaI	CTAG	6 cut(s)	6, 267, 401, 422, 473, 480
BfoI	RGCGCY	1 cut(s)	513
BisI	GCNGC	6 cut(s)	56, 156, 210, 690, 693, 710
BlsI	GCNGC	6 cut(s)	57, 157, 211, 691, 694, 711
Bme1390I	CCNGG	3 cut(s)	297, 315, 461
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	236, 644
BmiI	GGNNCC	2 cut(s)	237, 645
BmrFI	CCNGG	3 cut(s)	297, 315, 461
BmsI	GCATC	2 cut(s)	234, 328
BmtI	GCTAGC	1 cut(s)	9
BpuEI	CTTGAG	2 cut(s)	80, 542
BpuMI	CCSGG	2 cut(s)	315, 461
BsaHI	GRCGYC	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	4 cut(s)	96, 295, 372, 724
BsaWI	WCCGGW	2 cut(s)	85, 131
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 467
Bse1I	ACTGG	1 cut(s)	222
Bse21I	CCTNAGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	4 cut(s)	96, 295, 372, 724
BseGI	GGATG	1 cut(s)	600
BseLI	CCNNNNNNNGG	2 cut(s)	445, 467
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	2 cut(s)	231, 520
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	4 cut(s)	67, 167, 701, 721
BseYI	CCCAGC	1 cut(s)	438
BshFI	GGCC	1 cut(s)	646
BsiSI	CCGG	4 cut(s)	86, 132, 314, 461
BslFI	GGGAC	3 cut(s)	421, 443, 675
BslI	CCNNNNNNNGG	2 cut(s)	445, 467
BsmAI	GTCTC	1 cut(s)	454
BsmFI	GGGAC	3 cut(s)	421, 443, 675
BsnI	GGCC	1 cut(s)	646
Bso31I	GGTCTC	1 cut(s)	454
Bsp143I	GATC	1 cut(s)	272
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	3 cut(s)	81, 209, 693
BspANI	GGCC	1 cut(s)	646
BspCNI	CTCAG	2 cut(s)	232, 519
BspLI	GGNNCC	2 cut(s)	237, 645
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	454
BsrBI	CCGCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	4 cut(s)	96, 295, 372, 724
BssMI	GATC	1 cut(s)	272
BssNI	GRCGYC	1 cut(s)	525
BssT1I	CCWWGG	2 cut(s)	372, 724
Bst2UI	CCWGG	1 cut(s)	297
Bst6I	CTCTTC	2 cut(s)	199, 372
BstACI	GRCGYC	1 cut(s)	525
BstAPI	GCANNNNNTGC	1 cut(s)	775
BstC8I	GCNNGC	2 cut(s)	7, 673
BstDEI	CTNAG	3 cut(s)	240, 251, 506
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	600
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	1 cut(s)	512
BstKTI	GATC	1 cut(s)	275
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 775
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	3 cut(s)	295, 313, 459
BstV1I	GCAGC	4 cut(s)	67, 167, 701, 721
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	646
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	600
Cac8I	GCNNGC	2 cut(s)	7, 673
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	1 cut(s)	512
Cfr13I	GGNCC	2 cut(s)	236, 644
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	2 cut(s)	215, 503
CviAII	CATG	3 cut(s)	120, 277, 373
CviQI	GTAC	2 cut(s)	215, 503
DdeI	CTNAG	3 cut(s)	240, 251, 506
DpnI	GATC	1 cut(s)	274
DpnII	GATC	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	199, 372
EarI	CTCTTC	2 cut(s)	199, 372
Eco130I	CCWWGG	2 cut(s)	372, 724
Eco31I	GGTCTC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	372, 724
EcoT22I	ATGCAT	1 cut(s)	227
ErhI	CCWWGG	2 cut(s)	372, 724
FaeI	CATG	3 cut(s)	123, 280, 376
FaqI	GGGAC	3 cut(s)	421, 443, 675
FatI	CATG	3 cut(s)	119, 276, 372
Fnu4HI	GCNGC	6 cut(s)	56, 156, 210, 690, 693, 710
FokI	GGATG	1 cut(s)	607
Fsp4HI	GCNGC	6 cut(s)	56, 156, 210, 690, 693, 710
FspBI	CTAG	6 cut(s)	6, 267, 401, 422, 473, 480
GlaI	GCGC	1 cut(s)	511
GluI	GCNGC	6 cut(s)	56, 156, 210, 690, 693, 710
GsaI	CCCAGC	1 cut(s)	442
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	646
HapII	CCGG	4 cut(s)	86, 132, 314, 461
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	1 cut(s)	512
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	3 cut(s)	123, 280, 376
Hin6I	GCGC	1 cut(s)	510
HinP1I	GCGC	1 cut(s)	510
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	3 cut(s)	347, 391, 632
HpaII	CCGG	4 cut(s)	86, 132, 314, 461
HphI	GGTGA	2 cut(s)	257, 475
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	2 cut(s)	97, 637
Hpy188III	TCNNGA	2 cut(s)	239, 559
Hpy8I	GTNNAC	1 cut(s)	523
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	1 cut(s)	325
HpyCH4V	TGCA	8 cut(s)	225, 341, 353, 416, 671, 757, 769, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 775
HpyF3I	CTNAG	3 cut(s)	240, 251, 506
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	3 cut(s)	123, 280, 376
HspAI	GCGC	1 cut(s)	510
Kzo9I	GATC	1 cut(s)	272
LguI	GCTCTTC	1 cut(s)	199
Lsp1109I	GCAGC	4 cut(s)	67, 167, 701, 721
LweI	GCATC	2 cut(s)	234, 328
MaeI	CTAG	6 cut(s)	6, 267, 401, 422, 473, 480
MalI	GATC	1 cut(s)	274
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	1 cut(s)	272
MboII	GAAGA	6 cut(s)	36, 216, 347, 389, 500, 712
MflI	RGATCY	1 cut(s)	272
MluCI	AATT	5 cut(s)	280, 483, 654, 681, 752
MmeI	TCCRAC	1 cut(s)	581
Mph1103I	ATGCAT	1 cut(s)	227
MseI	TTAA	3 cut(s)	125, 680, 786
MspA1I	CMGCKG	1 cut(s)	695
MspI	CCGG	4 cut(s)	86, 132, 314, 461
MspR9I	CCNGG	3 cut(s)	297, 315, 461
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	120, 775
NciI	CCSGG	2 cut(s)	315, 461
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	1 cut(s)	272
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	123, 280, 376
NlaIV	GGNNCC	2 cut(s)	237, 645
NsiI	ATGCAT	1 cut(s)	227
NspI	RCATGY	1 cut(s)	123
PciSI	GCTCTTC	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	347, 391, 632
PflMI	CCANNNNNTGG	1 cut(s)	445
PkrI	GCNGC	6 cut(s)	57, 157, 211, 691, 694, 711
PpuMI	RGGWCCY	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	237, 645
PspPI	GGNCC	2 cut(s)	236, 644
PspPPI	RGGWCCY	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	272
RsaI	GTAC	2 cut(s)	216, 504
RsaNI	GTAC	2 cut(s)	215, 503
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	3 cut(s)	125, 680, 786
SatI	GCNGC	6 cut(s)	56, 156, 210, 690, 693, 710
Sau3AI	GATC	1 cut(s)	272
Sau96I	GGNCC	2 cut(s)	236, 644
ScrFI	CCNGG	3 cut(s)	297, 315, 461
SetI	ASST	6 cut(s)	60, 76, 143, 252, 423, 481
SfaNI	GCATC	2 cut(s)	234, 328
SinI	GGWCC	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	59, 557
SmoI	CTYRAG	2 cut(s)	59, 557
Sse9I	AATT	5 cut(s)	280, 483, 654, 681, 752
SsiI	CCGC	3 cut(s)	81, 209, 693
SspMI	CTAG	6 cut(s)	6, 267, 401, 422, 473, 480
StyD4I	CCNGG	3 cut(s)	295, 313, 459
StyI	CCWWGG	2 cut(s)	372, 724
TaqI	TCGA	2 cut(s)	624, 685
TasI	AATT	5 cut(s)	280, 483, 654, 681, 752
TatI	WGTACW	2 cut(s)	214, 502
TauI	GCSGC	2 cut(s)	212, 695
TfiI	GAWTC	3 cut(s)	347, 391, 632
Tru1I	TTAA	3 cut(s)	125, 680, 786
Tru9I	TTAA	3 cut(s)	125, 680, 786
TseI	GCWGC	4 cut(s)	55, 155, 689, 709
TspDTI	ATGAA	4 cut(s)	123, 180, 293, 360
TspGWI	ACGGA	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	280
XceI	RCATGY	1 cut(s)	123
XspI	CTAG	6 cut(s)	6, 267, 401, 422, 473, 480
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.