AT5G46795

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
18986936 .. 18988197
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G46795.1

Sequence Viewer

Length: 579 bp
ATGGAGACGATTGAGCAACAAAAACATTCACTCTCTTCTTTGCCTATGCTCTCTAGGCTTGAACACTTGGATTTCGTTATAAAGAATCTAGAGAGACAACAAAACCTTCCGAAATGGAAAGACGAAAGCGCGCCTACCACGCGTGGGTTAATCGATAGAGGCACGGCGATTAGAGAAGCGTATTTCAAAGGATCGTTACTAGATCGAATCGCGGCTTTGGAGACCAGACTTTTTCAGATATGTTTGGAGTTGGAATCGAGCAGTGGATCTTCTACTTCAACTGGAGGGTCTGGTGAAACATCAAGCCAAAGGATTAAGAGAGATTTGACAAAGACATTACCCATTTTCAGTAGCAACATTAATCCTTTTCATGTCCCCTTACAACATCCACAAGACCTTCGGGAGATGGAGGAGAAGATTGAGGAAGAGAAAGAAGAAGAGATCAATGTAGAGAAGCCATTACTGGAGAAGAAAAATAAGAAGACTAAAAAGAATGATGCTAATGAAACTTGCAAACCAAAGAAGAAGAAGACAAAATCTCCCAAGAAATGGTCTCGTTTTAGCTTATTGGGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

22.01

Weight (kDa)

9.17

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015995)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AccB7I CCANNNNNTGG 1 cut(s) 549
AccII CGCG 3 cut(s) 131, 142, 212
AciI CCGC 1 cut(s) 212
AclWI GGATC 2 cut(s) 199, 274
AfiI CCNNNNNNNGG 2 cut(s) 144, 549
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 3 cut(s) 62, 187, 279
AluBI AGCT 1 cut(s) 564
AluI AGCT 1 cut(s) 564
Alw26I GTCTC 3 cut(s) 88, 215, 558
AlwI GGATC 2 cut(s) 199, 274
ApeKI GCWGC 1 cut(s) 573
AseI ATTAAT 1 cut(s) 360
AspLEI GCGC 2 cut(s) 131, 133
AsuHPI GGTGA 1 cut(s) 305
BbsI GAAGAC 2 cut(s) 488, 536
BbvI GCAGC 1 cut(s) 560
BccI CCATC 1 cut(s) 400
BceAI ACGGC 1 cut(s) 180
BcoDI GTCTC 3 cut(s) 88, 215, 558
BfaI CTAG 3 cut(s) 54, 89, 200
BisI GCNGC 2 cut(s) 213, 574
BlsI GCNGC 2 cut(s) 214, 575
BmsI GCATC 1 cut(s) 487
BpiI GAAGAC 2 cut(s) 488, 536
BpmI CTGGAG 2 cut(s) 303, 485
Bsa29I ATCGAT 1 cut(s) 153
BsaI GGTCTC 2 cut(s) 215, 558
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 549
Bse1I ACTGG 2 cut(s) 286, 468
BseCI ATCGAT 1 cut(s) 153
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 2 cut(s) 144, 549
BseNI ACTGG 2 cut(s) 286, 468
BsePI GCGCGC 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 560
Bsh1236I CGCG 3 cut(s) 131, 142, 212
BshVI ATCGAT 1 cut(s) 153
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 144, 549
BsmAI GTCTC 3 cut(s) 88, 215, 558
BsmFI GGGAC 1 cut(s) 359
Bso31I GGTCTC 2 cut(s) 215, 558
Bsp143I GATC 4 cut(s) 191, 202, 266, 441
BspACI CCGC 1 cut(s) 212
BspDI ATCGAT 1 cut(s) 153
BspFNI CGCG 3 cut(s) 131, 142, 212
BspPI GGATC 2 cut(s) 199, 274
BspTNI GGTCTC 2 cut(s) 215, 558
BsrI ACTGG 2 cut(s) 286, 468
BssHII GCGCGC 1 cut(s) 129
BssMI GATC 4 cut(s) 191, 202, 266, 441
Bst6I CTCTTC 3 cut(s) 40, 420, 432
BstC8I GCNNGC 1 cut(s) 131
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 3 cut(s) 131, 142, 212
BstHHI GCGC 2 cut(s) 131, 133
BstKTI GATC 4 cut(s) 194, 205, 269, 444
BstMAI GTCTC 3 cut(s) 88, 215, 558
BstMBI GATC 4 cut(s) 191, 202, 266, 441
BstMWI GCNNNNNNNGC 3 cut(s) 55, 139, 570
BstUI CGCG 3 cut(s) 131, 142, 212
BstV1I GCAGC 1 cut(s) 560
BstV2I GAAGAC 2 cut(s) 488, 536
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
Bsu15I ATCGAT 1 cut(s) 153
BsuTUI ATCGAT 1 cut(s) 153
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 131
CfoI GCGC 2 cut(s) 131, 133
ClaI ATCGAT 1 cut(s) 153
CviAII CATG 1 cut(s) 371
CviJI RGCY 6 cut(s) 58, 215, 306, 457, 564, 573
CviKI_1 RGCY 6 cut(s) 58, 215, 306, 457, 564, 573
DpnI GATC 4 cut(s) 193, 204, 268, 443
DpnII GATC 4 cut(s) 191, 202, 266, 441
Eam1104I CTCTTC 3 cut(s) 40, 420, 432
EarI CTCTTC 3 cut(s) 40, 420, 432
Eco31I GGTCTC 2 cut(s) 215, 558
FaeI CATG 1 cut(s) 374
FaiI YATR 4 cut(s) 47, 80, 241, 372
FaqI GGGAC 1 cut(s) 359
FatI CATG 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 213, 574
FokI GGATG 1 cut(s) 372
Fsp4HI GCNGC 2 cut(s) 213, 574
FspBI CTAG 3 cut(s) 54, 89, 200
GlaI GCGC 2 cut(s) 130, 132
GluI GCNGC 2 cut(s) 213, 574
GsuI CTGGAG 2 cut(s) 303, 485
HhaI GCGC 2 cut(s) 131, 133
Hin1II CATG 1 cut(s) 374
Hin6I GCGC 2 cut(s) 129, 131
HinP1I GCGC 2 cut(s) 129, 131
HinfI GANTC 3 cut(s) 85, 207, 254
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 111, 237
Hpy188III TCNNGA 2 cut(s) 89, 401
HpyAV CCTTC 2 cut(s) 116, 407
HpyCH4V TGCA 1 cut(s) 513
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 139, 570
Hsp92II CATG 1 cut(s) 374
HspAI GCGC 2 cut(s) 129, 131
Kzo9I GATC 4 cut(s) 191, 202, 266, 441
LpnPI CCDG 4 cut(s) 238, 267, 276, 449
Lsp1109I GCAGC 1 cut(s) 560
LweI GCATC 1 cut(s) 487
MaeI CTAG 3 cut(s) 54, 89, 200
MaeIII GTNAC 1 cut(s) 195
MalI GATC 4 cut(s) 193, 204, 268, 443
MboI GATC 4 cut(s) 191, 202, 266, 441
MflI RGATCY 1 cut(s) 266
MluI ACGCGT 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 4 cut(s) 152, 278, 403, 415
MseI TTAA 3 cut(s) 149, 315, 360
MvnI CGCG 3 cut(s) 131, 142, 212
MwoI GCNNNNNNNGC 3 cut(s) 55, 139, 570
NdeII GATC 4 cut(s) 191, 202, 266, 441
NlaIII CATG 1 cut(s) 374
PauI GCGCGC 1 cut(s) 129
PfeI GAWTC 3 cut(s) 85, 207, 254
PflMI CCANNNNNTGG 1 cut(s) 549
PkrI GCNGC 2 cut(s) 214, 575
PshBI ATTAAT 1 cut(s) 360
PsiI TTATAA 1 cut(s) 80
PsuI RGATCY 1 cut(s) 266
PteI GCGCGC 1 cut(s) 129
SaqAI TTAA 3 cut(s) 149, 315, 360
SatI GCNGC 2 cut(s) 213, 574
Sau3AI GATC 4 cut(s) 191, 202, 266, 441
SetI ASST 3 cut(s) 108, 399, 566
SfaNI GCATC 1 cut(s) 487
SsiI CCGC 1 cut(s) 212
SspMI CTAG 3 cut(s) 54, 89, 200
TaqI TCGA 3 cut(s) 153, 205, 257
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 3 cut(s) 85, 207, 254
Tru1I TTAA 3 cut(s) 149, 315, 360
Tru9I TTAA 3 cut(s) 149, 315, 360
TscAI CASTG 1 cut(s) 268
TseI GCWGC 1 cut(s) 573
TspDTI ATGAA 2 cut(s) 359, 519
TspRI CASTG 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 549
VspI ATTAAT 1 cut(s) 360
XbaI TCTAGA 1 cut(s) 88
XspI CTAG 3 cut(s) 54, 89, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.