Rorug07G0115300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015995
Physical Location & Seq
Reverse (-)
8978217 .. 8979626
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0115300.1

Sequence Viewer

Length: 1410 bp
ATGACGGATCCGATCTCCAGCCTTGCGGCTGCTTTTACTCTCAAAGACGACACTCATGTCGATCTAGGCTTTGCCAGGGAAGCGGCGTTGCAGGACTCTCACCATTACATGGTGGGACAATTGCTTACTCGGAAGCCAAATCTAGCAGGTTTCATTGGTTCGATGACCACCATATGGCGCATGAAGGGGGATCTTTCCATCAAAGCGGTGGGAAATCGATTTGTTTTCCAGTTTGATTGGGAAGAAGATCGAAACCGTTATTTGCACGGAGGCCTATGGTTTTACCGGAACACTATGCTGCTCTTAGCCCTATATGATGGGATAGCTAATGTGGATTCAATCCCTCTTCATTCTCTGGAGTTATGGATCAGTGTTCAAGGGCTTCCTCCTACGCTTCGGAACAAGCTGTCCCTATCCATGATTGGATCTACTATTGGTAGGGTTTTGAGGCTTGATACGGTAGCATTGAAGCGTAAGGATGAGGAACAGAGGATCAGGATGGTTATTGACACCAAGAGAAGGTTTAGGGTGTTCAGAAGTTTCTCTTTCTTCTCCTCGGTTGAAGTGGATGTCACAATCCAATATGAGAAAGTCTGGGGGCATTGTCGTGACTGTGGGTTGTTTGATCACCCAATGGAAGGTTGTGATCGTCTGTTCATCAAGGAGGAGGAAGCCCGCAAATCGGCTGTAGCTGTGGATGCGATGTTGGGGCTGACTCTATTCAACTCTGCTCGGACTTCTAGGGCTCGGACTGGTATGGTGCAAAGAGATACGAATGTTAGGGTTGGGTTCCTATCTTCTGAGGCGGATGAACGTGGGGCACAGCATCTTGGTCAAGCAACTTTCTTCTCAGAATACCTCAATTCCGGACTCAAGGTTGCCGGTCTGCTTCAAAAGTTGGTGAAACCGGGCCCTTCGGTGGAACCGAAACGTAGTCTGGTTAGCTGTATGCTTAATGAATCACCTAGGGATCAGTTCTTACAAGCATGCAAACAAGGAGGCTTTCAGCTGCCAGCGTTTGAGACTACCAAGACACAGGAAGCTTCTGTTGTTATTAGTGGCCACAAGCGTGGTGCTGATCTTTCTCTTGTGCGGCCTGGCAAAAAGTTACTAGCACTACCTTCTCCTGCTATGGATGGGATTAGGAATCTGTCCCTGGCTTTACCTCAGAAGGATGATCGTCTGATCATTTCGCCACAAAAGAAGAAGGTAGGTCGCCCCAAGGGATCAAAGAATAAGATTAAAGGGTCTGCGGAGAAGGATGCTCGAGTCAAAGTGAAAGGGCGAAAGCGTTTTCTGAAGCTTCTTGAGGAGGAGGAAGGGAGTGATTCCTCTCCGAGGAAGGAAAAAACTACTCAAGCTAATGAGGTGATGACTTCAATTGTGGGGAAGCTTCAAGTGAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

469

Amino Acids

52.58

Weight (kDa)

9.79

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 35 - 103 3.9e-11 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46795
fragaria_vesca FvH4_5g22030
prunus_persica Prupe.5G036900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209671
rosa_laevigata RLG00000002967 RLG00000003105
rosa_roxburghii Rroxscaffold_3G00249160
rosa_rugosa Rorug07G0115200 Rorug07G0115300
rosa_samantha Rh5BG034200 Rh7AG248900 Rh7BG242900 Rh7CG264800 Rh7DG254800
rosa_wichuraiana Rw7G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 137
AccB7I CCANNNNNTGG 2 cut(s) 109, 174
AccIII TCCGGA 1 cut(s) 866
AciI CCGC 7 cut(s) 26, 83, 206, 676, 806, 1093, 1253
AclWI GGATC 8 cut(s) 2, 15, 198, 374, 433, 500, 978, 1234
AcoI YGGCCR 1 cut(s) 1060
AcuI CTGAAG 1 cut(s) 1319
AfiI CCNNNNNNNGG 7 cut(s) 109, 174, 519, 638, 682, 919, 1338
AgsI TTSAA 8 cut(s) 339, 377, 469, 563, 724, 893, 1380, 1397
AjnI CCWGG 3 cut(s) 74, 1096, 1155
AleI CACNNNNGTG 1 cut(s) 1068
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
AluBI AGCT 9 cut(s) 326, 406, 692, 945, 1009, 1043, 1303, 1361, 1393
AluI AGCT 9 cut(s) 326, 406, 692, 945, 1009, 1043, 1303, 1361, 1393
Alw26I GTCTC 1 cut(s) 1016
AlwI GGATC 8 cut(s) 2, 15, 198, 374, 433, 500, 978, 1234
Ama87I CYCGRG 1 cut(s) 1266
Aor13HI TCCGGA 1 cut(s) 866
AoxI GGCC 4 cut(s) 271, 910, 1060, 1094
ApaI GGGCCC 1 cut(s) 914
ApeKI GCWGC 3 cut(s) 29, 298, 1009
AspA2I CCTAGG 1 cut(s) 965
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 910, 911
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 5 cut(s) 92, 620, 913, 954, 1381
AvaI CYCGRG 1 cut(s) 1266
AvrII CCTAGG 1 cut(s) 965
BaeGI GKGCMC 2 cut(s) 823, 914
BaeI ACNNNNGTAYC 2 cut(s) 762, 795
BalI TGGCCA 1 cut(s) 1062
BamHI GGATCC 1 cut(s) 7
BanII GRGCYC 2 cut(s) 748, 914
BbvI GCAGC 3 cut(s) 16, 285, 996
BccI CCATC 4 cut(s) 206, 311, 493, 1130
BciT130I CCWGG 3 cut(s) 76, 1098, 1157
BclI TGATCA 2 cut(s) 625, 1185
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 1 cut(s) 1016
BfaI CTAG 5 cut(s) 65, 143, 741, 966, 1112
BfmI CTRYAG 1 cut(s) 687
BfuAI ACCTGC 1 cut(s) 137
BisI GCNGC 6 cut(s) 27, 30, 84, 299, 1010, 1094
BlnI CCTAGG 1 cut(s) 965
BlsI GCNGC 6 cut(s) 28, 31, 85, 300, 1011, 1095
Bme1390I CCNGG 4 cut(s) 76, 909, 1098, 1157
BmeT110I CYCGRG 1 cut(s) 1266
BmgT120I GGNCC 2 cut(s) 910, 911
BmiI GGNNCC 4 cut(s) 9, 791, 912, 924
BmrFI CCNGG 4 cut(s) 76, 909, 1098, 1157
BmsI GCATC 3 cut(s) 688, 835, 1252
BpmI CTGGAG 1 cut(s) 377
BpuEI CTTGAG 3 cut(s) 857, 1328, 1341
BpuMI CCSGG 1 cut(s) 909
Bsa29I ATCGAT 1 cut(s) 217
BsaJI CCNNGG 6 cut(s) 75, 555, 965, 1155, 1221, 1337
BsaWI WCCGGW 2 cut(s) 285, 866
Bsc4I CCNNNNNNNGG 7 cut(s) 109, 174, 519, 638, 682, 919, 1338
Bse118I RCCGGY 1 cut(s) 881
Bse1I ACTGG 2 cut(s) 229, 757
BseAI TCCGGA 1 cut(s) 866
BseBI CCWGG 3 cut(s) 76, 1098, 1157
BseCI ATCGAT 1 cut(s) 217
BseDI CCNNGG 6 cut(s) 75, 555, 965, 1155, 1221, 1337
BseGI GGATG 8 cut(s) 484, 504, 574, 703, 814, 1141, 1180, 1267
BseLI CCNNNNNNNGG 7 cut(s) 109, 174, 519, 638, 682, 919, 1338
BseMII CTCAG 3 cut(s) 792, 864, 1181
BseNI ACTGG 2 cut(s) 229, 757
BseRI GAGGAG 4 cut(s) 544, 680, 1325, 1328
BseSI GKGCMC 2 cut(s) 823, 914
BseXI GCAGC 3 cut(s) 16, 285, 996
BshFI GGCC 4 cut(s) 273, 912, 1062, 1096
BshVI ATCGAT 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 1266
BsiSI CCGG 4 cut(s) 286, 867, 882, 908
BslFI GGGAC 3 cut(s) 129, 394, 1138
BslI CCNNNNNNNGG 7 cut(s) 109, 174, 519, 638, 682, 919, 1338
BsmAI GTCTC 1 cut(s) 1016
BsmFI GGGAC 3 cut(s) 129, 394, 1138
BsnI GGCC 4 cut(s) 273, 912, 1062, 1096
BsoBI CYCGRG 1 cut(s) 1266
Bsp120I GGGCCC 1 cut(s) 910
Bsp1286I GDGCHC 3 cut(s) 748, 823, 914
Bsp13I TCCGGA 1 cut(s) 866
BspACI CCGC 7 cut(s) 26, 83, 206, 676, 806, 1093, 1253
BspANI GGCC 4 cut(s) 273, 912, 1062, 1096
BspCNI CTCAG 3 cut(s) 793, 863, 1180
BspDI ATCGAT 1 cut(s) 217
BspEI TCCGGA 1 cut(s) 866
BspLI GGNNCC 4 cut(s) 9, 791, 912, 924
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 8 cut(s) 2, 15, 198, 374, 433, 500, 978, 1234
BsrFI RCCGGY 1 cut(s) 881
BsrI ACTGG 2 cut(s) 229, 757
BssAI RCCGGY 1 cut(s) 881
BssECI CCNNGG 6 cut(s) 75, 555, 965, 1155, 1221, 1337
BssT1I CCWWGG 2 cut(s) 965, 1221
Bst2UI CCWGG 3 cut(s) 76, 1098, 1157
Bst4CI ACNGT 3 cut(s) 257, 460, 614
Bst6I CTCTTC 2 cut(s) 351, 1397
BstC8I GCNNGC 3 cut(s) 676, 988, 1014
BstDEI CTNAG 4 cut(s) 304, 801, 850, 1167
BstENI CCTNNNNNAGG 1 cut(s) 1336
BstF5I GGATG 8 cut(s) 484, 504, 574, 703, 814, 1141, 1180, 1267
BstHHI GCGC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 1016
BstMWI GCNNNNNNNGC 2 cut(s) 80, 698
BstNI CCWGG 3 cut(s) 76, 1098, 1157
BstNSI RCATGY 1 cut(s) 990
BstSCI CCNGG 4 cut(s) 74, 907, 1096, 1155
BstSFI CTRYAG 1 cut(s) 687
BstSLI GKGCMC 2 cut(s) 823, 914
BstV1I GCAGC 3 cut(s) 16, 285, 996
BstX2I RGATCY 3 cut(s) 7, 190, 425
BstXI CCANNNNNNTGG 1 cut(s) 1070
BstYI RGATCY 3 cut(s) 7, 190, 425
Bsu15I ATCGAT 1 cut(s) 217
BsuRI GGCC 4 cut(s) 273, 912, 1062, 1096
BsuTUI ATCGAT 1 cut(s) 217
BtgZI GCGATG 1 cut(s) 716
BtsCI GGATG 8 cut(s) 484, 504, 574, 703, 814, 1141, 1180, 1267
BtsIMutI CAGTG 1 cut(s) 376
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 3 cut(s) 676, 988, 1014
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 881
Cfr13I GGNCC 2 cut(s) 910, 911
ClaI ATCGAT 1 cut(s) 217
CviAII CATG 5 cut(s) 56, 109, 181, 418, 987
DdeI CTNAG 4 cut(s) 304, 801, 850, 1167
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 1060
Eam1104I CTCTTC 2 cut(s) 351, 1397
EarI CTCTTC 2 cut(s) 351, 1397
EciI GGCGGA 1 cut(s) 821
Eco130I CCWWGG 2 cut(s) 965, 1221
Eco147I AGGCCT 1 cut(s) 273
Eco24I GRGCYC 2 cut(s) 748, 914
Eco57I CTGAAG 1 cut(s) 1319
Eco88I CYCGRG 1 cut(s) 1266
EcoNI CCTNNNNNAGG 1 cut(s) 1336
EcoO109I RGGNCCY 1 cut(s) 911
EcoRII CCWGG 3 cut(s) 74, 1096, 1155
EcoT14I CCWWGG 2 cut(s) 965, 1221
EcoT38I GRGCYC 2 cut(s) 748, 914
ErhI CCWWGG 2 cut(s) 965, 1221
FaeI CATG 5 cut(s) 59, 112, 184, 421, 990
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FaqI GGGAC 3 cut(s) 129, 394, 1138
FatI CATG 5 cut(s) 55, 108, 180, 417, 986
FauI CCCGC 1 cut(s) 683
FauNDI CATATG 1 cut(s) 173
FbaI TGATCA 2 cut(s) 625, 1185
Fnu4HI GCNGC 6 cut(s) 27, 30, 84, 299, 1010, 1094
FokI GGATG 8 cut(s) 491, 511, 581, 710, 821, 1148, 1187, 1274
FriOI GRGCYC 2 cut(s) 748, 914
Fsp4HI GCNGC 6 cut(s) 27, 30, 84, 299, 1010, 1094
FspBI CTAG 5 cut(s) 65, 143, 741, 966, 1112
GlaI GCGC 1 cut(s) 179
GluI GCNGC 6 cut(s) 27, 30, 84, 299, 1010, 1094
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 4 cut(s) 273, 912, 1062, 1096
HapII CCGG 4 cut(s) 286, 867, 882, 908
HhaI GCGC 1 cut(s) 180
Hin1II CATG 5 cut(s) 59, 112, 184, 421, 990
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HindIII AAGCTT 3 cut(s) 1041, 1301, 1391
HinfI GANTC 8 cut(s) 95, 335, 715, 870, 959, 1147, 1269, 1328
HpaII CCGG 4 cut(s) 286, 867, 882, 908
HphI GGTGA 5 cut(s) 92, 620, 913, 954, 1381
Hpy188III TCNNGA 5 cut(s) 356, 496, 608, 867, 1307
HpyCH4III ACNGT 3 cut(s) 257, 460, 614
HpyCH4IV ACGT 2 cut(s) 814, 931
HpyCH4V TGCA 4 cut(s) 91, 265, 763, 990
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 698
HpyF3I CTNAG 4 cut(s) 304, 801, 850, 1167
HpySE526I ACGT 2 cut(s) 814, 931
Hsp92II CATG 5 cut(s) 59, 112, 184, 421, 990
HspAI GCGC 1 cut(s) 178
Kpn2I TCCGGA 1 cut(s) 866
Ksp22I TGATCA 2 cut(s) 625, 1185
Lsp1109I GCAGC 3 cut(s) 16, 285, 996
LweI GCATC 3 cut(s) 688, 835, 1252
MaeI CTAG 5 cut(s) 65, 143, 741, 966, 1112
MaeII ACGT 2 cut(s) 814, 931
MaeIII GTNAC 3 cut(s) 571, 608, 1107
MboII GAAGA 7 cut(s) 254, 257, 338, 541, 789, 838, 1216
MfeI CAATTG 2 cut(s) 119, 1380
MflI RGATCY 3 cut(s) 7, 190, 425
MhlI GDGCHC 3 cut(s) 748, 823, 914
MlsI TGGCCA 1 cut(s) 1062
MluCI AATT 3 cut(s) 119, 862, 1380
MluNI TGGCCA 1 cut(s) 1062
MlyI GAGTC 4 cut(s) 89, 709, 864, 1278
Mox20I TGGCCA 1 cut(s) 1062
MroI TCCGGA 1 cut(s) 866
MscI TGGCCA 1 cut(s) 1062
MseI TTAA 2 cut(s) 954, 1242
MslI CAYNNNNRTG 2 cut(s) 606, 1068
Msp20I TGGCCA 1 cut(s) 1062
MspA1I CMGCKG 1 cut(s) 1009
MspI CCGG 4 cut(s) 286, 867, 882, 908
MspR9I CCNGG 4 cut(s) 76, 909, 1098, 1157
MunI CAATTG 2 cut(s) 119, 1380
MvaI CCWGG 3 cut(s) 76, 1098, 1157
MwoI GCNNNNNNNGC 2 cut(s) 80, 698
NciI CCSGG 1 cut(s) 909
NdeI CATATG 1 cut(s) 173
NlaIII CATG 5 cut(s) 59, 112, 184, 421, 990
NlaIV GGNNCC 4 cut(s) 9, 791, 912, 924
NmuCI GTSAC 2 cut(s) 571, 608
NspI RCATGY 1 cut(s) 990
OliI CACNNNNGTG 1 cut(s) 1068
PaeI GCATGC 1 cut(s) 990
PaeR7I CTCGAG 1 cut(s) 1266
PceI AGGCCT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 923
PfeI GAWTC 4 cut(s) 335, 959, 1147, 1328
PflMI CCANNNNNTGG 2 cut(s) 109, 174
PkrI GCNGC 6 cut(s) 28, 31, 85, 300, 1011, 1095
PleI GAGTC 4 cut(s) 89, 709, 864, 1277
PpsI GAGTC 4 cut(s) 89, 709, 864, 1277
Psp6I CCWGG 3 cut(s) 74, 1096, 1155
PspGI CCWGG 3 cut(s) 74, 1096, 1155
PspN4I GGNNCC 4 cut(s) 9, 791, 912, 924
PspOMI GGGCCC 1 cut(s) 910
PspPI GGNCC 2 cut(s) 910, 911
PspXI VCTCGAGB 1 cut(s) 1266
PsuI RGATCY 3 cut(s) 7, 190, 425
PvuII CAGCTG 1 cut(s) 1009
RseI CAYNNNNRTG 2 cut(s) 606, 1068
SaqAI TTAA 2 cut(s) 954, 1242
SatI GCNGC 6 cut(s) 27, 30, 84, 299, 1010, 1094
Sau96I GGNCC 2 cut(s) 910, 911
SchI GAGTC 4 cut(s) 89, 709, 864, 1278
ScrFI CCNGG 4 cut(s) 76, 909, 1098, 1157
SduI GDGCHC 3 cut(s) 748, 823, 914
SfaNI GCATC 3 cut(s) 688, 835, 1252
SfcI CTRYAG 1 cut(s) 687
Sfr274I CTCGAG 1 cut(s) 1266
SlaI CTCGAG 1 cut(s) 1266
SmiMI CAYNNNNRTG 2 cut(s) 606, 1068
SmlI CTYRAG 4 cut(s) 872, 1266, 1307, 1356
SmoI CTYRAG 4 cut(s) 872, 1266, 1307, 1356
SphI GCATGC 1 cut(s) 990
Sse9I AATT 3 cut(s) 119, 862, 1380
SseBI AGGCCT 1 cut(s) 273
SsiI CCGC 7 cut(s) 26, 83, 206, 676, 806, 1093, 1253
SspMI CTAG 5 cut(s) 65, 143, 741, 966, 1112
StuI AGGCCT 1 cut(s) 273
StyD4I CCNGG 4 cut(s) 74, 907, 1096, 1155
StyI CCWWGG 2 cut(s) 965, 1221
TaaI ACNGT 3 cut(s) 257, 460, 614
TaiI ACGT 2 cut(s) 817, 934
TaqI TCGA 5 cut(s) 60, 161, 217, 250, 1267
TasI AATT 3 cut(s) 119, 862, 1380
TauI GCSGC 3 cut(s) 29, 86, 1096
TfiI GAWTC 4 cut(s) 335, 959, 1147, 1328
Tru1I TTAA 2 cut(s) 954, 1242
Tru9I TTAA 2 cut(s) 954, 1242
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 2 cut(s) 571, 608
TseI GCWGC 3 cut(s) 29, 298, 1009
Tsp45I GTSAC 2 cut(s) 571, 608
TspDTI ATGAA 6 cut(s) 142, 197, 338, 646, 825, 972
TspGWI ACGGA 2 cut(s) 20, 282
TspRI CASTG 1 cut(s) 376
Van91I CCANNNNNTGG 2 cut(s) 109, 174
XagI CCTNNNNNAGG 1 cut(s) 1336
XceI RCATGY 1 cut(s) 990
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 1266
XmaJI CCTAGG 1 cut(s) 965
XspI CTAG 5 cut(s) 65, 143, 741, 966, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.