Rh5BG034200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
2387493 .. 2389505
2013 bp
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UTR
Exon/CDS
Intron
Rh5BG034200.1

Sequence Viewer

Length: 360 bp
ATGATTGCTTTTGAAGACAATTCTTGGCAGCTGTGCTTAGAGAAGGAATCAAGCAGCTCATCTAGCACTTCTACACAGGCATCATCTGGTGAAACCTACTGGAGCCACGGATTGAAGGGCGAATCATCTTGCTCGCTCCCAACTTTCACTCCCAATATTCCCTTTCATGCTCACAATAAACGACTCTCCCAAGTCCATGCCACTAGGCTTGAAATTCAGGAACAACCCGACCCAAAGCAGAATAAGAAGCCTTCAAGTTCTCCTGCTCAACAGAAACATAGGAAGAAGAAGACAACTAGGGCCAATAAGGATGAAAAATCTCTCAAAACTGAGAAGAAGAGAATCCCTCCCATTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.4

Weight (kDa)

9.7

Isoelectric Point (pI)

68.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015995)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 213
AgsI TTSAA 4 cut(s) 14, 115, 212, 255
AluBI AGCT 2 cut(s) 31, 57
AluI AGCT 2 cut(s) 31, 57
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 28, 54
ApoI RAATTY 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 101
BbsI GAAGAC 2 cut(s) 21, 296
BbvI GCAGC 2 cut(s) 40, 66
BfaI CTAG 3 cut(s) 63, 204, 297
BisI GCNGC 2 cut(s) 29, 55
BlsI GCNGC 2 cut(s) 30, 56
BmgT120I GGNCC 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 104
BmsI GCATC 1 cut(s) 89
BpiI GAAGAC 2 cut(s) 21, 296
BplI GAGNNNNNCTC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 40, 66
BshFI GGCC 1 cut(s) 302
BsnI GGCC 1 cut(s) 302
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 37, 330
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 40, 66
BstV2I GAAGAC 2 cut(s) 21, 296
BsuRI GGCC 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 300
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviAII CATG 2 cut(s) 167, 197
CviJI RGCY 6 cut(s) 31, 57, 105, 208, 250, 302
CviKI_1 RGCY 6 cut(s) 31, 57, 105, 208, 250, 302
DdeI CTNAG 2 cut(s) 37, 330
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
FaeI CATG 2 cut(s) 170, 200
FaiI YATR 3 cut(s) 168, 198, 279
FatI CATG 2 cut(s) 166, 196
Fnu4HI GCNGC 2 cut(s) 29, 55
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 29, 55
FspBI CTAG 3 cut(s) 63, 204, 297
GluI GCNGC 2 cut(s) 29, 55
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 1 cut(s) 302
Hin1II CATG 2 cut(s) 170, 200
HinfI GANTC 4 cut(s) 47, 122, 183, 342
HphI GGTGA 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 37, 109, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 2 cut(s) 37, 330
Hsp92II CATG 2 cut(s) 170, 200
LmnI GCTCC 2 cut(s) 102, 141
LpnPI CCDG 5 cut(s) 62, 72, 85, 203, 276
Lsp1109I GCAGC 2 cut(s) 40, 66
LweI GCATC 1 cut(s) 89
MaeI CTAG 3 cut(s) 63, 204, 297
MboII GAAGA 6 cut(s) 26, 295, 298, 301, 346, 349
MluCI AATT 2 cut(s) 19, 213
MlyI GAGTC 1 cut(s) 177
MnlI CCTC 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 63
NlaIII CATG 2 cut(s) 170, 200
NlaIV GGNNCC 1 cut(s) 104
PfeI GAWTC 3 cut(s) 47, 122, 342
PkrI GCNGC 2 cut(s) 30, 56
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 300
PvuII CAGCTG 1 cut(s) 31
SatI GCNGC 2 cut(s) 29, 55
Sau96I GGNCC 1 cut(s) 300
SchI GAGTC 1 cut(s) 177
SetI ASST 3 cut(s) 33, 59, 98
SfaNI GCATC 1 cut(s) 89
Sse9I AATT 2 cut(s) 19, 213
SspI AATATT 1 cut(s) 157
SspMI CTAG 3 cut(s) 63, 204, 297
TasI AATT 2 cut(s) 19, 213
TfiI GAWTC 3 cut(s) 47, 122, 342
TseI GCWGC 2 cut(s) 28, 54
TspDTI ATGAA 2 cut(s) 155, 327
TspGWI ACGGA 1 cut(s) 123
XapI RAATTY 1 cut(s) 213
XspI CTAG 3 cut(s) 63, 204, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.