Rw7G021110

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
24282486 .. 24284294
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G021110.1

Sequence Viewer

Length: 456 bp
ATGCCAGTGGATCTGGCATTGAAGGAGACTTACTTCAAAGGCTCACTCATGGATCGAGTGGCAGCTCTTGAAAATAGGCTTTTTCAGCTGTGCTTAGAGAAGGAATCAAGCAGCTCATCTAGCACTTCTACACAGGCATCATCTGGTGAAACCTACTGGAGCCACGGATCGAAGGGCGAATCATCTTGCTCGCTCCCAACTTTCACTCCCAATATTCCCTTTCATGCACACAATAAACGACTCTCCCAAGTCCATACCACTAGGCTTGAAATTCAGGAACAACCCAATAGAGGGAATAAGCCAAAGCAGAATAAGAAGCCTTCAAGTTCTCCTGCTCAACAGAAACATAGGAAGAAGAAGACAACTAGGGCCAATAAGGATGAAAAATCTCTCAAAACTGAGAAGAAGAGAATCCCTCCCATTAGTTGGCCACACCTAAAAATATTGGGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.03

Weight (kDa)

9.98

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015995)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 426
AclWI GGATC 3 cut(s) 18, 60, 175
AcoI YGGCCR 1 cut(s) 428
AcsI RAATTY 1 cut(s) 270
AfiI CCNNNNNNNGG 3 cut(s) 290, 291, 426
AgsI TTSAA 5 cut(s) 22, 37, 71, 269, 324
AluBI AGCT 3 cut(s) 65, 88, 114
AluI AGCT 3 cut(s) 65, 88, 114
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 3 cut(s) 18, 60, 175
AoxI GGCC 2 cut(s) 369, 428
ApeKI GCWGC 3 cut(s) 62, 111, 450
ApoI RAATTY 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 158
BalI TGGCCA 1 cut(s) 430
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BbsI GAAGAC 1 cut(s) 365
BbvI GCAGC 3 cut(s) 74, 123, 437
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 4 cut(s) 120, 261, 366, 454
BisI GCNGC 3 cut(s) 63, 112, 451
BlsI GCNGC 3 cut(s) 64, 113, 452
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 1 cut(s) 161
BmsI GCATC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 400, 432
BpmI CTGGAG 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 291, 426
Bse1I ACTGG 2 cut(s) 5, 161
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 290, 291, 426
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 5, 161
BseXI GCAGC 3 cut(s) 74, 123, 437
BshFI GGCC 2 cut(s) 371, 430
BslI CCNNNNNNNGG 3 cut(s) 290, 291, 426
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 2 cut(s) 371, 430
Bsp143I GATC 3 cut(s) 10, 52, 167
BspANI GGCC 2 cut(s) 371, 430
BspCNI CTCAG 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 161
BspPI GGATC 3 cut(s) 18, 60, 175
BsrI ACTGG 2 cut(s) 5, 161
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 3 cut(s) 10, 52, 167
Bst6I CTCTTC 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 94, 399
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 3 cut(s) 13, 55, 170
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 3 cut(s) 10, 52, 167
BstMWI GCNNNNNNNGC 2 cut(s) 85, 120
BstV1I GCAGC 3 cut(s) 74, 123, 437
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 2 cut(s) 371, 430
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 369
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 2 cut(s) 49, 224
DdeI CTNAG 2 cut(s) 94, 399
DpnI GATC 3 cut(s) 12, 54, 169
DpnII GATC 3 cut(s) 10, 52, 167
EaeI YGGCCR 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
FaeI CATG 2 cut(s) 52, 227
FaiI YATR 4 cut(s) 50, 225, 255, 348
FatI CATG 2 cut(s) 48, 223
Fnu4HI GCNGC 3 cut(s) 63, 112, 451
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 3 cut(s) 63, 112, 451
FspBI CTAG 4 cut(s) 120, 261, 366, 454
GluI GCNGC 3 cut(s) 63, 112, 451
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 2 cut(s) 371, 430
Hin1II CATG 2 cut(s) 52, 227
HinfI GANTC 4 cut(s) 104, 179, 240, 411
HphI GGTGA 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 68, 275
HpyAV CCTTC 4 cut(s) 16, 94, 166, 330
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 120
HpyF3I CTNAG 2 cut(s) 94, 399
Hsp92II CATG 2 cut(s) 52, 227
Kzo9I GATC 3 cut(s) 10, 52, 167
LmnI GCTCC 2 cut(s) 159, 198
LpnPI CCDG 6 cut(s) 18, 119, 129, 142, 260, 345
Lsp1109I GCAGC 3 cut(s) 74, 123, 437
LweI GCATC 1 cut(s) 146
MaeI CTAG 4 cut(s) 120, 261, 366, 454
MalI GATC 3 cut(s) 12, 54, 169
MboI GATC 3 cut(s) 10, 52, 167
MboII GAAGA 5 cut(s) 364, 367, 370, 415, 418
MflI RGATCY 1 cut(s) 10
MlsI TGGCCA 1 cut(s) 430
MluCI AATT 1 cut(s) 270
MluNI TGGCCA 1 cut(s) 430
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 2 cut(s) 284, 426
Mox20I TGGCCA 1 cut(s) 430
MscI TGGCCA 1 cut(s) 430
Msp20I TGGCCA 1 cut(s) 430
MspA1I CMGCKG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 85, 120
NdeII GATC 3 cut(s) 10, 52, 167
NlaIII CATG 2 cut(s) 52, 227
NlaIV GGNNCC 1 cut(s) 161
PfeI GAWTC 3 cut(s) 104, 179, 411
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 3 cut(s) 64, 113, 452
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 1 cut(s) 369
PsuI RGATCY 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 88
SatI GCNGC 3 cut(s) 63, 112, 451
Sau3AI GATC 3 cut(s) 10, 52, 167
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 1 cut(s) 234
SetI ASST 5 cut(s) 67, 90, 116, 155, 438
SfaNI GCATC 1 cut(s) 146
Sse9I AATT 1 cut(s) 270
SspI AATATT 2 cut(s) 214, 444
SspMI CTAG 4 cut(s) 120, 261, 366, 454
TaqI TCGA 2 cut(s) 55, 170
TasI AATT 1 cut(s) 270
TfiI GAWTC 3 cut(s) 104, 179, 411
TscAI CASTG 1 cut(s) 12
TseI GCWGC 3 cut(s) 62, 111, 450
TspDTI ATGAA 2 cut(s) 212, 396
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 1 cut(s) 12
Van91I CCANNNNNTGG 1 cut(s) 426
XapI RAATTY 1 cut(s) 270
XspI CTAG 4 cut(s) 120, 261, 366, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.