FvH4_5g22030

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
13394150 .. 13395852
1703 bp
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UTR
Exon/CDS
Intron
FvH4_5g22030.t1

Sequence Viewer

Length: 468 bp
ATGCCAGTGGATATGGCATTGAAGGAGACTCACTTCAAAGGTTCACTCATGGATCGGGTGGCTGCTCTTGAAAATAGGCTTTTTCAGCTGTGTTTAGAGAAGGAATCAAGCAGCTCATCAAGCACTTCTACACAAGCATCATCTGGTGAAACCTACTGGAGCTACAGATCGAAGGGCGAATCATCTTGCTCTCTCCCGACATTCACTTCCAATATTCCCTTTCTGCAAGATCTTCACAATATACGACTCTCCCAAATTCATGACACTAGGCCTGAAATTCAGGAACAACCCGATACAGAGAATGAGCCAAAGCAGAAGAAGAGTTCAAGTTCTCCTGCTCAACAGAAACATAGGAAGAAGAAGAAGAAGAAGATAACTTGGGCCAATAAGGATGAAAAATCTCTCAAAACTGGGAAGAAGAGAATCTCTTTCATCAGTTGGCCACACCTAAAAATGTTGGGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.7

Weight (kDa)

9.63

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015995)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 60
AcoI YGGCCR 1 cut(s) 440
AcsI RAATTY 2 cut(s) 255, 276
AgsI TTSAA 4 cut(s) 22, 37, 71, 327
AluBI AGCT 3 cut(s) 88, 114, 162
AluI AGCT 3 cut(s) 88, 114, 162
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 1 cut(s) 60
AoxI GGCC 3 cut(s) 269, 381, 440
ApeKI GCWGC 3 cut(s) 62, 111, 462
ApoI RAATTY 2 cut(s) 255, 276
AspS9I GGNCC 1 cut(s) 381
AsuHPI GGTGA 1 cut(s) 158
BalI TGGCCA 1 cut(s) 442
BbvI GCAGC 3 cut(s) 49, 123, 449
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 2 cut(s) 267, 466
BfmI CTRYAG 1 cut(s) 163
BglII AGATCT 1 cut(s) 229
BisI GCNGC 3 cut(s) 63, 112, 463
BlsI GCNGC 3 cut(s) 64, 113, 464
BmgT120I GGNCC 1 cut(s) 381
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 146
BmuI ACTGGG 1 cut(s) 420
BpmI CTGGAG 1 cut(s) 178
Bse1I ACTGG 3 cut(s) 5, 161, 415
BseGI GGATG 1 cut(s) 397
BseNI ACTGG 3 cut(s) 5, 161, 415
BseXI GCAGC 3 cut(s) 49, 123, 449
BshFI GGCC 3 cut(s) 271, 383, 442
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 3 cut(s) 271, 383, 442
Bsp143I GATC 3 cut(s) 52, 167, 229
BspANI GGCC 3 cut(s) 271, 383, 442
BspHI TCATGA 1 cut(s) 259
BspPI GGATC 1 cut(s) 60
BsrI ACTGG 3 cut(s) 5, 161, 415
BssMI GATC 3 cut(s) 52, 167, 229
Bst6I CTCTTC 2 cut(s) 314, 413
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 3 cut(s) 55, 170, 232
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 3 cut(s) 52, 167, 229
BstMWI GCNNNNNNNGC 2 cut(s) 85, 120
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 3 cut(s) 49, 123, 449
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 3 cut(s) 271, 383, 442
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 12
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 381
CviAII CATG 2 cut(s) 49, 260
DpnI GATC 3 cut(s) 54, 169, 231
DpnII GATC 3 cut(s) 52, 167, 229
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 2 cut(s) 314, 413
EarI CTCTTC 2 cut(s) 314, 413
Eco147I AGGCCT 1 cut(s) 271
FaeI CATG 2 cut(s) 52, 263
FaiI YATR 5 cut(s) 14, 50, 242, 261, 351
FatI CATG 2 cut(s) 48, 259
Fnu4HI GCNGC 3 cut(s) 63, 112, 463
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 3 cut(s) 63, 112, 463
FspBI CTAG 2 cut(s) 267, 466
GluI GCNGC 3 cut(s) 63, 112, 463
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 3 cut(s) 271, 383, 442
Hin1II CATG 2 cut(s) 52, 263
HinfI GANTC 5 cut(s) 28, 104, 179, 246, 423
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 44
Hpy188III TCNNGA 4 cut(s) 68, 196, 260, 281
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 16, 94, 166
HpyCH4V TGCA 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 120
Hsp92II CATG 2 cut(s) 52, 263
Kzo9I GATC 3 cut(s) 52, 167, 229
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 7 cut(s) 18, 129, 142, 266, 285, 348, 396
Lsp1109I GCAGC 3 cut(s) 49, 123, 449
LweI GCATC 1 cut(s) 146
MaeI CTAG 2 cut(s) 267, 466
MalI GATC 3 cut(s) 54, 169, 231
MboI GATC 3 cut(s) 52, 167, 229
MflI RGATCY 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 442
MluCI AATT 2 cut(s) 255, 276
MluNI TGGCCA 1 cut(s) 442
MlyI GAGTC 2 cut(s) 22, 240
Mox20I TGGCCA 1 cut(s) 442
MscI TGGCCA 1 cut(s) 442
Msp20I TGGCCA 1 cut(s) 442
MspA1I CMGCKG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 85, 120
NdeII GATC 3 cut(s) 52, 167, 229
NlaIII CATG 2 cut(s) 52, 263
PagI TCATGA 1 cut(s) 259
PceI AGGCCT 1 cut(s) 271
PfeI GAWTC 3 cut(s) 104, 179, 423
PkrI GCNGC 3 cut(s) 64, 113, 464
PleI GAGTC 2 cut(s) 22, 240
PpsI GAGTC 2 cut(s) 22, 240
PspPI GGNCC 1 cut(s) 381
PsuI RGATCY 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 88
SatI GCNGC 3 cut(s) 63, 112, 463
Sau3AI GATC 3 cut(s) 52, 167, 229
Sau96I GGNCC 1 cut(s) 381
SchI GAGTC 2 cut(s) 22, 240
SetI ASST 6 cut(s) 43, 90, 116, 155, 164, 450
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 163
Sse9I AATT 2 cut(s) 255, 276
SseBI AGGCCT 1 cut(s) 271
SspI AATATT 1 cut(s) 214
SspMI CTAG 2 cut(s) 267, 466
StuI AGGCCT 1 cut(s) 271
TaqI TCGA 1 cut(s) 170
TasI AATT 2 cut(s) 255, 276
TfiI GAWTC 3 cut(s) 104, 179, 423
TscAI CASTG 1 cut(s) 12
TseI GCWGC 3 cut(s) 62, 111, 462
TspDTI ATGAA 3 cut(s) 248, 408, 421
TspRI CASTG 1 cut(s) 12
XapI RAATTY 2 cut(s) 255, 276
XspI CTAG 2 cut(s) 267, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.