Rh7AG248900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015995
Physical Location & Seq
Forward (+)
24676959 .. 24679039
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG248900.1

Sequence Viewer

Length: 621 bp
ATGAATGATAAAGCACAATCGGATCATAGTTCATCCAAGTCTTTGGTTTCTAGGTTGGATCATCTGGATTTCCTTATGAAGTATTTGGAAAGAAAACAAAATTTGGCGAAATTGGAGAGTAACAATGGTTCTAGTACTGCTGGAGAACTGAAGAAGAAGCAATGCATGCCAGTGGATCTGGCATTGAAGGAGACTTACTTCAAAGGCTCACTCATGGATCGAGTGGCAGCTCTTGAAAATAGGCTTTTTCAGCTGTGCTTAGAGAAGGAATCAAGCAGCTCATCTAGCACTTCTACACAGGCATCATCTGGTGAAACCTACTGGAGCCACGGATCGAAGGGCGAATCATCTTGCTCGTTCCCAACTTTCACTCCCAATATTCCCTTTCATGCTCACAATAAACGACTCTCCCAAGTCCATGCCACTAGGCTTGAAATTCAGGAACAACCCGATAGAGGGAATAAGCCAAAGCAGAATAAGAAGCCTTCAAGTTCTCCTGCTCAACAGAAACATAGGAAGAAGAAGACAACTAGGGCCAATAAGGATGAAAAATCTCTCAAAACTGAGAAGAAGAGAATCCCTCCTATTAGTTGGCCACACCTAAAAATATTGGGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.23

Weight (kDa)

9.79

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46795
fragaria_vesca FvH4_5g22030
prunus_persica Prupe.5G036900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209671
rosa_laevigata RLG00000002967 RLG00000003105
rosa_roxburghii Rroxscaffold_3G00249160
rosa_rugosa Rorug07G0115200 Rorug07G0115300
rosa_samantha Rh5BG034200 Rh7AG248900 Rh7BG242900 Rh7CG264800 Rh7DG254800
rosa_wichuraiana Rw7G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 30, 66, 183, 225, 340
AcoI YGGCCR 1 cut(s) 593
AcsI RAATTY 2 cut(s) 100, 435
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 2 cut(s) 455, 456
AgsI TTSAA 5 cut(s) 187, 202, 236, 434, 489
AluBI AGCT 3 cut(s) 230, 253, 279
AluI AGCT 3 cut(s) 230, 253, 279
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 5 cut(s) 30, 66, 183, 225, 340
AoxI GGCC 2 cut(s) 534, 593
ApeKI GCWGC 3 cut(s) 227, 276, 615
ApoI RAATTY 2 cut(s) 100, 435
AspS9I GGNCC 1 cut(s) 534
AsuHPI GGTGA 1 cut(s) 323
BalI TGGCCA 1 cut(s) 595
BarI GAAGNNNNNNTAC 2 cut(s) 179, 211
BbsI GAAGAC 1 cut(s) 530
BbvI GCAGC 3 cut(s) 239, 288, 602
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 6 cut(s) 51, 132, 285, 426, 531, 619
BisI GCNGC 3 cut(s) 228, 277, 616
BlsI GCNGC 3 cut(s) 229, 278, 617
BmcAI AGTACT 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 534
BmiI GGNNCC 1 cut(s) 326
BmsI GCATC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 530
BplI GAGNNNNNCTC 2 cut(s) 565, 597
BpmI CTGGAG 2 cut(s) 162, 343
BsaJI CCNNGG 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 456
Bse1I ACTGG 2 cut(s) 170, 326
Bse3DI GCAATG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 2 cut(s) 32, 550
BseLI CCNNNNNNNGG 2 cut(s) 455, 456
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 2 cut(s) 170, 326
BseXI GCAGC 3 cut(s) 239, 288, 602
BshFI GGCC 2 cut(s) 536, 595
BslI CCNNNNNNNGG 2 cut(s) 455, 456
BsmAI GTCTC 1 cut(s) 185
BsnI GGCC 2 cut(s) 536, 595
Bsp143I GATC 5 cut(s) 22, 58, 175, 217, 332
BspANI GGCC 2 cut(s) 536, 595
BspCNI CTCAG 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 326
BspPI GGATC 5 cut(s) 30, 66, 183, 225, 340
BsrDI GCAATG 1 cut(s) 167
BsrI ACTGG 2 cut(s) 170, 326
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 5 cut(s) 22, 58, 175, 217, 332
Bst6I CTCTTC 1 cut(s) 566
BstAPI GCANNNNNTGC 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 259, 564
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 2 cut(s) 32, 550
BstKTI GATC 5 cut(s) 25, 61, 178, 220, 335
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 5 cut(s) 22, 58, 175, 217, 332
BstMWI GCNNNNNNNGC 3 cut(s) 166, 250, 285
BstNSI RCATGY 1 cut(s) 169
BstV1I GCAGC 3 cut(s) 239, 288, 602
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 2 cut(s) 536, 595
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 2 cut(s) 32, 550
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 534
Csp6I GTAC 1 cut(s) 135
CspCI CAANNNNNGTGG 2 cut(s) 412, 447
CviAII CATG 4 cut(s) 166, 214, 389, 419
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 2 cut(s) 259, 564
DpnI GATC 5 cut(s) 24, 60, 177, 219, 334
DpnII GATC 5 cut(s) 22, 58, 175, 217, 332
EaeI YGGCCR 1 cut(s) 593
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 167
FaeI CATG 4 cut(s) 169, 217, 392, 422
FaiI YATR 7 cut(s) 27, 77, 167, 215, 390, 420, 513
FatI CATG 4 cut(s) 165, 213, 388, 418
Fnu4HI GCNGC 3 cut(s) 228, 277, 616
FokI GGATG 2 cut(s) 19, 557
Fsp4HI GCNGC 3 cut(s) 228, 277, 616
FspBI CTAG 6 cut(s) 51, 132, 285, 426, 531, 619
GluI GCNGC 3 cut(s) 228, 277, 616
GsuI CTGGAG 2 cut(s) 162, 343
HaeIII GGCC 2 cut(s) 536, 595
Hin1II CATG 4 cut(s) 169, 217, 392, 422
HinfI GANTC 4 cut(s) 269, 344, 405, 576
HphI GGTGA 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 3 cut(s) 65, 233, 440
HpyAV CCTTC 4 cut(s) 181, 259, 331, 495
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 250, 285
HpyF3I CTNAG 2 cut(s) 259, 564
Hsp92II CATG 4 cut(s) 169, 217, 392, 422
Kzo9I GATC 5 cut(s) 22, 58, 175, 217, 332
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 9 cut(s) 50, 126, 164, 183, 284, 294, 307, 425, 510
Lsp1109I GCAGC 3 cut(s) 239, 288, 602
LweI GCATC 1 cut(s) 311
MaeI CTAG 6 cut(s) 51, 132, 285, 426, 531, 619
MaeIII GTNAC 1 cut(s) 119
MalI GATC 5 cut(s) 24, 60, 177, 219, 334
MboI GATC 5 cut(s) 22, 58, 175, 217, 332
MboII GAAGA 7 cut(s) 163, 166, 529, 532, 535, 580, 583
MflI RGATCY 1 cut(s) 175
MlsI TGGCCA 1 cut(s) 595
MluCI AATT 3 cut(s) 100, 110, 435
MluNI TGGCCA 1 cut(s) 595
MlyI GAGTC 1 cut(s) 399
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 2 cut(s) 449, 591
Mox20I TGGCCA 1 cut(s) 595
Mph1103I ATGCAT 1 cut(s) 167
MscI TGGCCA 1 cut(s) 595
MslI CAYNNNNRTG 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 595
MspA1I CMGCKG 1 cut(s) 253
MwoI GCNNNNNNNGC 3 cut(s) 166, 250, 285
NdeII GATC 5 cut(s) 22, 58, 175, 217, 332
NlaIII CATG 4 cut(s) 169, 217, 392, 422
NlaIV GGNNCC 1 cut(s) 326
NsiI ATGCAT 1 cut(s) 167
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PfeI GAWTC 3 cut(s) 269, 344, 576
PkrI GCNGC 3 cut(s) 229, 278, 617
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 534
PsrI GAACNNNNNNTAC 2 cut(s) 112, 144
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 253
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 170
SatI GCNGC 3 cut(s) 228, 277, 616
Sau3AI GATC 5 cut(s) 22, 58, 175, 217, 332
Sau96I GGNCC 1 cut(s) 534
ScaI AGTACT 1 cut(s) 136
SchI GAGTC 1 cut(s) 399
SetI ASST 6 cut(s) 56, 232, 255, 281, 320, 603
SfaNI GCATC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 170
SphI GCATGC 1 cut(s) 169
Sse9I AATT 3 cut(s) 100, 110, 435
SspI AATATT 2 cut(s) 379, 609
SspMI CTAG 6 cut(s) 51, 132, 285, 426, 531, 619
TaqI TCGA 2 cut(s) 220, 335
TasI AATT 3 cut(s) 100, 110, 435
TatI WGTACW 1 cut(s) 134
TfiI GAWTC 3 cut(s) 269, 344, 576
TscAI CASTG 1 cut(s) 177
TseI GCWGC 3 cut(s) 227, 276, 615
TspDTI ATGAA 5 cut(s) 17, 21, 92, 377, 561
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 1 cut(s) 177
XapI RAATTY 2 cut(s) 100, 435
XceI RCATGY 1 cut(s) 169
XspI CTAG 6 cut(s) 51, 132, 285, 426, 531, 619
ZrmI AGTACT 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.