RLG00000002967

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015995
Physical Location & Seq
Reverse (-)
42409213 .. 42411427
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002967

Sequence Viewer

Length: 558 bp
ATGCCGCCGCCGGATGAGAGCAAGCTCTTGGTTGAAACCGCCACCGCCGGCCTTCAGGAAACTCCCTACTGTTTCAACTCGGCTCCGTGCTTATCACAATCTCCGCCACGTGATGTAACAAACTCGAGTGACGTGTTCTCAATCCGTCGACCAAAAAGGAGGGAATTCATAACCGCTTTTGCGCACAAGCTCTGCTTAGAGAATAAATCAAGCAGCTCATCTAGCACTTCTACACGGGCATCATCTGGTGAAACCTACTGGAGCCACGGATTGAAGGGCGAATCATCTTGCTCGCTCCCAAATTTCACTCCCAATATTCCCTTTCATGCTCACAATAAACGACTCTCCCAAGTCCATGCCACTAGGCTTGAAATTCAGGAACAACCCGATAGAGGGAATAACCCAAAGCAGAATAAGAAGCCTTCAAGTTCTCCTGCTCAACAGAAACATAGCAAGAAGAAGACAACTAGGGCCAACAAGGATGAAAAATCTCTCAAAACTGAGAAGAAGAGAATCCCTCCCATTAGTTTGCCACACCTAAAAATATTGGGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.57

Weight (kDa)

9.84

Isoelectric Point (pI)

69.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46795
fragaria_vesca FvH4_5g22030
prunus_persica Prupe.5G036900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209671
rosa_laevigata RLG00000002967 RLG00000003105
rosa_roxburghii Rroxscaffold_3G00249160
rosa_rugosa Rorug07G0115200 Rorug07G0115300
rosa_samantha Rh5BG034200 Rh7AG248900 Rh7BG242900 Rh7CG264800 Rh7DG254800
rosa_wichuraiana Rw7G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 183
AccI GTMKAC 1 cut(s) 148
AciI CCGC 6 cut(s) 5, 8, 39, 45, 104, 174
AcsI RAATTY 3 cut(s) 164, 301, 372
AcuI CTGAAG 1 cut(s) 38
AcvI CACGTG 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 392, 393
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 5 cut(s) 35, 76, 274, 371, 426
AjiI CACGTC 1 cut(s) 133
AluBI AGCT 3 cut(s) 25, 190, 216
AluI AGCT 3 cut(s) 25, 190, 216
Ama87I CYCGRG 1 cut(s) 124
AoxI GGCC 2 cut(s) 49, 471
ApeKI GCWGC 2 cut(s) 213, 552
ApoI RAATTY 3 cut(s) 164, 301, 372
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 471
AsuHPI GGTGA 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 124
BbrPI CACGTG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 467
BbvI GCAGC 2 cut(s) 225, 539
BfaI CTAG 4 cut(s) 222, 363, 468, 556
BisI GCNGC 4 cut(s) 5, 8, 214, 553
BlsI GCNGC 4 cut(s) 6, 9, 215, 554
BmeT110I CYCGRG 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 471
BmiI GGNNCC 2 cut(s) 84, 263
BmsI GCATC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 467
BplI GAGNNNNNCTC 2 cut(s) 502, 534
BpmI CTGGAG 1 cut(s) 280
BsaAI YACGTR 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 393
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 2 cut(s) 19, 487
BseLI CCNNNNNNNGG 2 cut(s) 392, 393
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 225, 539
BshFI GGCC 2 cut(s) 51, 473
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 2 cut(s) 11, 48
BslI CCNNNNNNNGG 2 cut(s) 392, 393
BsnI GGCC 2 cut(s) 51, 473
BsoBI CYCGRG 1 cut(s) 124
BspACI CCGC 6 cut(s) 5, 8, 39, 45, 104, 174
BspANI GGCC 2 cut(s) 51, 473
BspCNI CTCAG 1 cut(s) 493
BspLI GGNNCC 2 cut(s) 84, 263
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 503
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 3 cut(s) 23, 49, 293
BstDEI CTNAG 2 cut(s) 196, 501
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 2 cut(s) 19, 487
BstHHI GCGC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 225, 539
BstV2I GAAGAC 1 cut(s) 467
BsuRI GGCC 2 cut(s) 51, 473
BtgI CCRYGG 1 cut(s) 265
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 19, 487
Cac8I GCNNGC 3 cut(s) 23, 49, 293
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 471
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 2 cut(s) 326, 356
DdeI CTNAG 2 cut(s) 196, 501
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
EciI GGCGGA 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 38
Eco72I CACGTG 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 164
FaeI CATG 2 cut(s) 329, 359
FaiI YATR 4 cut(s) 170, 327, 357, 450
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 2 cut(s) 325, 355
FblI GTMKAC 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 5, 8, 214, 553
FokI GGATG 2 cut(s) 26, 494
Fsp4HI GCNGC 4 cut(s) 5, 8, 214, 553
FspBI CTAG 4 cut(s) 222, 363, 468, 556
FspI TGCGCA 1 cut(s) 183
GlaI GCGC 1 cut(s) 183
GluI GCNGC 4 cut(s) 5, 8, 214, 553
GsuI CTGGAG 1 cut(s) 280
HaeIII GGCC 2 cut(s) 51, 473
HapII CCGG 2 cut(s) 11, 48
HhaI GCGC 1 cut(s) 184
Hin1II CATG 2 cut(s) 329, 359
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HinfI GANTC 3 cut(s) 281, 342, 513
HpaII CCGG 2 cut(s) 11, 48
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 149
Hpy188III TCNNGA 2 cut(s) 56, 377
Hpy8I GTNNAC 1 cut(s) 149
Hpy99I CGWCG 1 cut(s) 150
HpyAV CCTTC 3 cut(s) 62, 268, 432
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 2 cut(s) 109, 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 2 cut(s) 196, 501
HpySE526I ACGT 2 cut(s) 109, 132
Hsp92II CATG 2 cut(s) 329, 359
HspAI GCGC 1 cut(s) 182
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
LmnI GCTCC 3 cut(s) 88, 261, 300
LpnPI CCDG 7 cut(s) 24, 41, 61, 231, 244, 362, 447
Lsp1109I GCAGC 2 cut(s) 225, 539
LweI GCATC 1 cut(s) 248
MaeI CTAG 4 cut(s) 222, 363, 468, 556
MaeII ACGT 2 cut(s) 109, 132
MaeIII GTNAC 2 cut(s) 115, 128
MboII GAAGA 4 cut(s) 469, 472, 517, 520
MluCI AATT 3 cut(s) 164, 301, 372
MlyI GAGTC 1 cut(s) 336
MnlI CCTC 3 cut(s) 153, 386, 528
MroNI GCCGGC 1 cut(s) 47
MspI CCGG 2 cut(s) 11, 48
MwoI GCNNNNNNNGC 1 cut(s) 222
NaeI GCCGGC 1 cut(s) 49
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 2 cut(s) 329, 359
NlaIV GGNNCC 2 cut(s) 84, 263
NmeAIII GCCGAG 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 128
NsbI TGCGCA 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 124
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 281, 513
PkrI GCNGC 4 cut(s) 6, 9, 215, 554
PleI GAGTC 1 cut(s) 336
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
PpsI GAGTC 1 cut(s) 336
Ppu21I YACGTR 1 cut(s) 110
PspCI CACGTG 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 84, 263
PspPI GGNCC 1 cut(s) 471
PspXI VCTCGAGB 1 cut(s) 124
SalI GTCGAC 1 cut(s) 147
SatI GCNGC 4 cut(s) 5, 8, 214, 553
Sau96I GGNCC 1 cut(s) 471
SchI GAGTC 1 cut(s) 336
SetI ASST 7 cut(s) 27, 112, 135, 192, 218, 257, 540
SfaNI GCATC 1 cut(s) 248
Sfr274I CTCGAG 1 cut(s) 124
SlaI CTCGAG 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 3 cut(s) 164, 301, 372
SsiI CCGC 6 cut(s) 5, 8, 39, 45, 104, 174
SspI AATATT 2 cut(s) 316, 546
SspMI CTAG 4 cut(s) 222, 363, 468, 556
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 2 cut(s) 112, 135
TaqI TCGA 2 cut(s) 125, 148
TasI AATT 3 cut(s) 164, 301, 372
TauI GCSGC 2 cut(s) 7, 10
TfiI GAWTC 2 cut(s) 281, 513
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 2 cut(s) 213, 552
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 157, 314, 498
TspGWI ACGGA 3 cut(s) 75, 134, 282
XapI RAATTY 3 cut(s) 164, 301, 372
XhoI CTCGAG 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 148
XspI CTAG 4 cut(s) 222, 363, 468, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.