RLG00000003105

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015995
Physical Location & Seq
Reverse (-)
44431001 .. 44432643
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003105

Sequence Viewer

Length: 624 bp
ATGAATGATAAAGCACAATCGGATCATAGTTCATCCAAGTCTTTGGTTTCTAGGTTGGATCATCTGGATTTCCTTATGAAGTATTTGGAAAGAAAACAAAATTTGGCGAAATTGGAGAGTAACAATGGTTCTAGTAATGCTGGGGGAGAACTGAAGAAGAAGCAATGCATGCCAGTGGATCTGGCATTGAAGGAGACTTACTTCAAAGGCTCACTCATGGATCGAGTGGCAGCTCTTGAAAATAGGCTTTTTCAGCTGTGCTTAGAGAAGGAATCAAGCAGCTCATCTAGCACTTCTACACAGGCATCATCTGGTGAAACCTACTGGAGCCACGGATTGAAGGGGGAATCATCTTGCTCGCTCCCAACTTTCACTCCCAATATTCCCTTTCATGCTCACAATAAACGACTCTCCCAAGTCCATGCCACTAGGCTTGAAATTCAGGAACAACCCGATAGAGGGAATAACCCAAAGCAGACTAAGAAGCCTTCAAGTTCTCCTGCTCAACAGAAACATAGGAAGAAGAAGACAACCAGGGCCAATAAGGATGAAAAATCTCTCAAAACTGAGAAGAAGAGAATCCCTCCCATTAGTTGGCCACACCTAAAAATATTGGGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.26

Weight (kDa)

9.76

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46795
fragaria_vesca FvH4_5g22030
prunus_persica Prupe.5G036900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209671
rosa_laevigata RLG00000002967 RLG00000003105
rosa_roxburghii Rroxscaffold_3G00249160
rosa_rugosa Rorug07G0115200 Rorug07G0115300
rosa_samantha Rh5BG034200 Rh7AG248900 Rh7BG242900 Rh7CG264800 Rh7DG254800
rosa_wichuraiana Rw7G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 594
AclWI GGATC 4 cut(s) 30, 66, 186, 228
AcoI YGGCCR 1 cut(s) 596
AcsI RAATTY 2 cut(s) 100, 438
AcuI CTGAAG 1 cut(s) 173
AfiI CCNNNNNNNGG 3 cut(s) 458, 459, 594
AgsI TTSAA 6 cut(s) 190, 205, 239, 340, 437, 492
AjnI CCWGG 1 cut(s) 533
AluBI AGCT 3 cut(s) 233, 256, 282
AluI AGCT 3 cut(s) 233, 256, 282
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 4 cut(s) 30, 66, 186, 228
AoxI GGCC 2 cut(s) 537, 596
ApeKI GCWGC 3 cut(s) 230, 279, 618
ApoI RAATTY 2 cut(s) 100, 438
AspS9I GGNCC 1 cut(s) 537
AsuHPI GGTGA 1 cut(s) 326
BalI TGGCCA 1 cut(s) 598
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbsI GAAGAC 1 cut(s) 533
BbvI GCAGC 3 cut(s) 242, 291, 605
BciT130I CCWGG 1 cut(s) 535
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 5 cut(s) 51, 132, 288, 429, 622
BisI GCNGC 3 cut(s) 231, 280, 619
BlsI GCNGC 3 cut(s) 232, 281, 620
Bme1390I CCNGG 1 cut(s) 535
BmgT120I GGNCC 1 cut(s) 537
BmiI GGNNCC 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 314
BpiI GAAGAC 1 cut(s) 533
BplI GAGNNNNNCTC 2 cut(s) 568, 600
BpmI CTGGAG 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 331, 534
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 3 cut(s) 458, 459, 594
Bse1I ACTGG 2 cut(s) 173, 329
Bse3DI GCAATG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 535
BseDI CCNNGG 2 cut(s) 331, 534
BseGI GGATG 2 cut(s) 32, 553
BseLI CCNNNNNNNGG 3 cut(s) 458, 459, 594
BseMI GCAATG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 2 cut(s) 173, 329
BseXI GCAGC 3 cut(s) 242, 291, 605
BseYI CCCAGC 1 cut(s) 140
BshFI GGCC 2 cut(s) 539, 598
BslI CCNNNNNNNGG 3 cut(s) 458, 459, 594
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 2 cut(s) 539, 598
Bsp143I GATC 4 cut(s) 22, 58, 178, 220
BspANI GGCC 2 cut(s) 539, 598
BspCNI CTCAG 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 329
BspPI GGATC 4 cut(s) 30, 66, 186, 228
BsrDI GCAATG 1 cut(s) 170
BsrI ACTGG 2 cut(s) 173, 329
BssECI CCNNGG 2 cut(s) 331, 534
BssMI GATC 4 cut(s) 22, 58, 178, 220
Bst2UI CCWGG 1 cut(s) 535
Bst6I CTCTTC 1 cut(s) 569
BstAPI GCANNNNNTGC 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 170, 359
BstDEI CTNAG 3 cut(s) 262, 480, 567
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 2 cut(s) 32, 553
BstKTI GATC 4 cut(s) 25, 61, 181, 223
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 4 cut(s) 22, 58, 178, 220
BstMWI GCNNNNNNNGC 3 cut(s) 169, 253, 288
BstNI CCWGG 1 cut(s) 535
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 533
BstV1I GCAGC 3 cut(s) 242, 291, 605
BstV2I GAAGAC 1 cut(s) 533
BstX2I RGATCY 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 2 cut(s) 539, 598
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 2 cut(s) 32, 553
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 170, 359
Cfr13I GGNCC 1 cut(s) 537
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 4 cut(s) 169, 217, 392, 422
DdeI CTNAG 3 cut(s) 262, 480, 567
DpnI GATC 4 cut(s) 24, 60, 180, 222
DpnII GATC 4 cut(s) 22, 58, 178, 220
EaeI YGGCCR 1 cut(s) 596
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 533
EcoT22I ATGCAT 1 cut(s) 170
FaeI CATG 4 cut(s) 172, 220, 395, 425
FaiI YATR 7 cut(s) 27, 77, 170, 218, 393, 423, 516
FatI CATG 4 cut(s) 168, 216, 391, 421
Fnu4HI GCNGC 3 cut(s) 231, 280, 619
FokI GGATG 2 cut(s) 19, 560
Fsp4HI GCNGC 3 cut(s) 231, 280, 619
FspBI CTAG 5 cut(s) 51, 132, 288, 429, 622
GluI GCNGC 3 cut(s) 231, 280, 619
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 346
HaeIII GGCC 2 cut(s) 539, 598
Hin1II CATG 4 cut(s) 172, 220, 395, 425
HinfI GANTC 4 cut(s) 272, 347, 408, 579
HphI GGTGA 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 3 cut(s) 65, 236, 443
HpyAV CCTTC 4 cut(s) 184, 262, 334, 498
HpyCH4V TGCA 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 253, 288
HpyF3I CTNAG 3 cut(s) 262, 480, 567
Hsp92II CATG 4 cut(s) 172, 220, 395, 425
Kzo9I GATC 4 cut(s) 22, 58, 178, 220
LmnI GCTCC 2 cut(s) 327, 366
Lsp1109I GCAGC 3 cut(s) 242, 291, 605
LweI GCATC 1 cut(s) 314
MaeI CTAG 5 cut(s) 51, 132, 288, 429, 622
MaeIII GTNAC 1 cut(s) 119
MalI GATC 4 cut(s) 24, 60, 180, 222
MboI GATC 4 cut(s) 22, 58, 178, 220
MboII GAAGA 7 cut(s) 166, 169, 532, 535, 538, 583, 586
MflI RGATCY 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 598
MluCI AATT 3 cut(s) 100, 110, 438
MluNI TGGCCA 1 cut(s) 598
MlyI GAGTC 1 cut(s) 402
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 2 cut(s) 452, 594
Mox20I TGGCCA 1 cut(s) 598
Mph1103I ATGCAT 1 cut(s) 170
MscI TGGCCA 1 cut(s) 598
MslI CAYNNNNRTG 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 598
MspA1I CMGCKG 1 cut(s) 256
MspR9I CCNGG 1 cut(s) 535
MvaI CCWGG 1 cut(s) 535
MwoI GCNNNNNNNGC 3 cut(s) 169, 253, 288
NdeII GATC 4 cut(s) 22, 58, 178, 220
NlaIII CATG 4 cut(s) 172, 220, 395, 425
NlaIV GGNNCC 1 cut(s) 329
NsiI ATGCAT 1 cut(s) 170
NspI RCATGY 1 cut(s) 172
PaeI GCATGC 1 cut(s) 172
PfeI GAWTC 3 cut(s) 272, 347, 579
PflMI CCANNNNNTGG 1 cut(s) 594
PkrI GCNGC 3 cut(s) 232, 281, 620
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 533
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 533
PspN4I GGNNCC 1 cut(s) 329
PspPI GGNCC 1 cut(s) 537
PsrI GAACNNNNNNTAC 2 cut(s) 112, 144
PsuI RGATCY 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 173
SatI GCNGC 3 cut(s) 231, 280, 619
Sau3AI GATC 4 cut(s) 22, 58, 178, 220
Sau96I GGNCC 1 cut(s) 537
SchI GAGTC 1 cut(s) 402
ScrFI CCNGG 1 cut(s) 535
SetI ASST 6 cut(s) 56, 235, 258, 284, 323, 606
SfaNI GCATC 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 173
SphI GCATGC 1 cut(s) 172
Sse9I AATT 3 cut(s) 100, 110, 438
SspI AATATT 2 cut(s) 382, 612
SspMI CTAG 5 cut(s) 51, 132, 288, 429, 622
StyD4I CCNGG 1 cut(s) 533
TaqI TCGA 1 cut(s) 223
TasI AATT 3 cut(s) 100, 110, 438
TfiI GAWTC 3 cut(s) 272, 347, 579
TscAI CASTG 1 cut(s) 180
TseI GCWGC 3 cut(s) 230, 279, 618
TspDTI ATGAA 5 cut(s) 17, 21, 92, 380, 564
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 594
XapI RAATTY 2 cut(s) 100, 438
XceI RCATGY 1 cut(s) 172
XspI CTAG 5 cut(s) 51, 132, 288, 429, 622
Zsp2I ATGCAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.