Rh7CG264800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015995
Physical Location & Seq
Forward (+)
25964160 .. 25968070
3911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG264800.1

Sequence Viewer

Length: 546 bp
ATGAAGTATTTGGAAAGAAAACAAAATTTGGCGAAATTGGAGAGTAACAATGGTTCTAGTACTGCTGGAGAACTGAAGAAGAAGCAATGCATGCCAGTGGATCTGGCATTGAAGGAGACTTACTTCAAAGGCTCACTCATGGATCGAGTGGCAGCTCTTGAAAATAGGCTTTTTCAGCTGTGCTTAGAGAAGGAATCAAGCAGCTCATCTAGCACTTCTACACAGGCATCATCTGGTGAAACCTACTGGAGCCACGGATCGAAGGGCGAATCATCTTGCTCGTTCCCAACTTTCACTCCCAATATTCCCTTTCATGCTCACAATAAACGACTCTCCCAAGTCCATGCCACTAGGCTTGAAATTCAGGAACAACCCGATAGAGGGAATAAGCCAAAGCAGAATAAGAAGCCTTCAAGTTCTCCTGCTCAACAGAAACATAGGAAGAAGAAGACAACTAGGGCCAATAAGGATGAAAAATCTCTCAAAACTGAGAAGAAGAGAATCCCTCCTATTAGTTGGCCACACCTAAAAATATTGGGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.41

Weight (kDa)

9.9

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46795
fragaria_vesca FvH4_5g22030
prunus_persica Prupe.5G036900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209671
rosa_laevigata RLG00000002967 RLG00000003105
rosa_roxburghii Rroxscaffold_3G00249160
rosa_rugosa Rorug07G0115200 Rorug07G0115300
rosa_samantha Rh5BG034200 Rh7AG248900 Rh7BG242900 Rh7CG264800 Rh7DG254800
rosa_wichuraiana Rw7G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 108, 150, 265
AcoI YGGCCR 1 cut(s) 518
AcsI RAATTY 2 cut(s) 25, 360
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 380, 381
AgsI TTSAA 5 cut(s) 112, 127, 161, 359, 414
AluBI AGCT 3 cut(s) 155, 178, 204
AluI AGCT 3 cut(s) 155, 178, 204
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 3 cut(s) 108, 150, 265
AoxI GGCC 2 cut(s) 459, 518
ApeKI GCWGC 3 cut(s) 152, 201, 540
ApoI RAATTY 2 cut(s) 25, 360
AspS9I GGNCC 1 cut(s) 459
AsuHPI GGTGA 1 cut(s) 248
BalI TGGCCA 1 cut(s) 520
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbsI GAAGAC 1 cut(s) 455
BbvI GCAGC 3 cut(s) 164, 213, 527
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 5 cut(s) 57, 210, 351, 456, 544
BisI GCNGC 3 cut(s) 153, 202, 541
BlsI GCNGC 3 cut(s) 154, 203, 542
BmcAI AGTACT 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 1 cut(s) 251
BmsI GCATC 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 455
BplI GAGNNNNNCTC 2 cut(s) 490, 522
BpmI CTGGAG 2 cut(s) 87, 268
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 381
Bse1I ACTGG 2 cut(s) 95, 251
Bse3DI GCAATG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 2 cut(s) 380, 381
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 2 cut(s) 95, 251
BseXI GCAGC 3 cut(s) 164, 213, 527
BshFI GGCC 2 cut(s) 461, 520
BslI CCNNNNNNNGG 2 cut(s) 380, 381
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 2 cut(s) 461, 520
Bsp143I GATC 3 cut(s) 100, 142, 257
BspANI GGCC 2 cut(s) 461, 520
BspCNI CTCAG 1 cut(s) 481
BspLI GGNNCC 1 cut(s) 251
BspPI GGATC 3 cut(s) 108, 150, 265
BsrDI GCAATG 1 cut(s) 92
BsrI ACTGG 2 cut(s) 95, 251
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 3 cut(s) 100, 142, 257
Bst6I CTCTTC 1 cut(s) 491
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 184, 489
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 475
BstKTI GATC 3 cut(s) 103, 145, 260
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 100, 142, 257
BstMWI GCNNNNNNNGC 3 cut(s) 91, 175, 210
BstNSI RCATGY 1 cut(s) 94
BstV1I GCAGC 3 cut(s) 164, 213, 527
BstV2I GAAGAC 1 cut(s) 455
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 2 cut(s) 461, 520
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 459
Csp6I GTAC 1 cut(s) 60
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 4 cut(s) 91, 139, 314, 344
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 184, 489
DpnI GATC 3 cut(s) 102, 144, 259
DpnII GATC 3 cut(s) 100, 142, 257
EaeI YGGCCR 1 cut(s) 518
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 92
FaeI CATG 4 cut(s) 94, 142, 317, 347
FaiI YATR 5 cut(s) 92, 140, 315, 345, 438
FatI CATG 4 cut(s) 90, 138, 313, 343
Fnu4HI GCNGC 3 cut(s) 153, 202, 541
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 3 cut(s) 153, 202, 541
FspBI CTAG 5 cut(s) 57, 210, 351, 456, 544
GluI GCNGC 3 cut(s) 153, 202, 541
GsuI CTGGAG 2 cut(s) 87, 268
HaeIII GGCC 2 cut(s) 461, 520
Hin1II CATG 4 cut(s) 94, 142, 317, 347
HinfI GANTC 4 cut(s) 194, 269, 330, 501
HphI GGTGA 1 cut(s) 248
Hpy188III TCNNGA 2 cut(s) 158, 365
HpyAV CCTTC 4 cut(s) 106, 184, 256, 420
HpyCH4V TGCA 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 175, 210
HpyF3I CTNAG 2 cut(s) 184, 489
Hsp92II CATG 4 cut(s) 94, 142, 317, 347
Kzo9I GATC 3 cut(s) 100, 142, 257
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 8 cut(s) 51, 89, 108, 209, 219, 232, 350, 435
Lsp1109I GCAGC 3 cut(s) 164, 213, 527
LweI GCATC 1 cut(s) 236
MaeI CTAG 5 cut(s) 57, 210, 351, 456, 544
MaeIII GTNAC 1 cut(s) 44
MalI GATC 3 cut(s) 102, 144, 259
MboI GATC 3 cut(s) 100, 142, 257
MboII GAAGA 7 cut(s) 88, 91, 454, 457, 460, 505, 508
MflI RGATCY 1 cut(s) 100
MlsI TGGCCA 1 cut(s) 520
MluCI AATT 3 cut(s) 25, 35, 360
MluNI TGGCCA 1 cut(s) 520
MlyI GAGTC 1 cut(s) 324
MnlI CCTC 2 cut(s) 374, 516
Mox20I TGGCCA 1 cut(s) 520
Mph1103I ATGCAT 1 cut(s) 92
MscI TGGCCA 1 cut(s) 520
MslI CAYNNNNRTG 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 520
MspA1I CMGCKG 1 cut(s) 178
MwoI GCNNNNNNNGC 3 cut(s) 91, 175, 210
NdeII GATC 3 cut(s) 100, 142, 257
NlaIII CATG 4 cut(s) 94, 142, 317, 347
NlaIV GGNNCC 1 cut(s) 251
NsiI ATGCAT 1 cut(s) 92
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PfeI GAWTC 3 cut(s) 194, 269, 501
PkrI GCNGC 3 cut(s) 154, 203, 542
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 251
PspPI GGNCC 1 cut(s) 459
PsrI GAACNNNNNNTAC 2 cut(s) 37, 69
PsuI RGATCY 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 95
SatI GCNGC 3 cut(s) 153, 202, 541
Sau3AI GATC 3 cut(s) 100, 142, 257
Sau96I GGNCC 1 cut(s) 459
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 1 cut(s) 324
SetI ASST 5 cut(s) 157, 180, 206, 245, 528
SfaNI GCATC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 95
SphI GCATGC 1 cut(s) 94
Sse9I AATT 3 cut(s) 25, 35, 360
SspI AATATT 2 cut(s) 304, 534
SspMI CTAG 5 cut(s) 57, 210, 351, 456, 544
TaqI TCGA 2 cut(s) 145, 260
TasI AATT 3 cut(s) 25, 35, 360
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 3 cut(s) 194, 269, 501
TscAI CASTG 1 cut(s) 102
TseI GCWGC 3 cut(s) 152, 201, 540
TspDTI ATGAA 3 cut(s) 17, 302, 486
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 102
XapI RAATTY 2 cut(s) 25, 360
XceI RCATGY 1 cut(s) 94
XspI CTAG 5 cut(s) 57, 210, 351, 456, 544
ZrmI AGTACT 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.