RchiOBHm_Chr7g0209671

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
27126876 .. 27127261
386 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18763

Sequence Viewer

Length: 279 bp
ATGAATGATAAAGCACAATCGGATCATAGTTCATCCAAGTCTTTGGTTTCTAGGTTGGATCATCTGGATTTCCTTATGAAGTATTTGGAAAGAAAACAAAATTTGGCGAAATTGGAGAGTAACAATGGTTCCAGTACTGCTGGAGGAGAACTGAAGAAGAAGCAATGCATGCCAGTGGATCTGGCATTGAAGGAGACTTACTTCAAAGGCTCACTCATGGATCAAGTGGCAGCTCTTGAAAATAGGCTTTTTCAGGTTCTCTTTCTCATTTGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.43

Weight (kDa)

8.58

Isoelectric Point (pI)

28.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015995)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 30, 66, 186, 228
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 3 cut(s) 190, 205, 239
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 4 cut(s) 30, 66, 186, 228
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 100
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbvI GCAGC 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 2 cut(s) 51, 277
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 132, 173
Bse3DI GCAATG 1 cut(s) 170
BseGI GGATG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 170
BseNI ACTGG 2 cut(s) 132, 173
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 188
Bsp143I GATC 4 cut(s) 22, 58, 178, 220
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 4 cut(s) 30, 66, 186, 228
BsrDI GCAATG 1 cut(s) 170
BsrI ACTGG 2 cut(s) 132, 173
BssMI GATC 4 cut(s) 22, 58, 178, 220
BstAPI GCANNNNNTGC 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 170
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 4 cut(s) 25, 61, 181, 223
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 4 cut(s) 22, 58, 178, 220
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNSI RCATGY 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 178
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 135
CviAII CATG 2 cut(s) 169, 217
CviJI RGCY 3 cut(s) 210, 233, 247
CviKI_1 RGCY 3 cut(s) 210, 233, 247
CviQI GTAC 1 cut(s) 135
DpnI GATC 4 cut(s) 24, 60, 180, 222
DpnII GATC 4 cut(s) 22, 58, 178, 220
Eco57I CTGAAG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 170
FaeI CATG 2 cut(s) 172, 220
FaiI YATR 4 cut(s) 27, 77, 170, 218
FatI CATG 2 cut(s) 168, 216
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 51, 277
GluI GCNGC 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 162
Hin1II CATG 2 cut(s) 172, 220
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 65, 236
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
Hsp92II CATG 2 cut(s) 172, 220
Kzo9I GATC 4 cut(s) 22, 58, 178, 220
LpnPI CCDG 6 cut(s) 50, 126, 145, 167, 186, 239
Lsp1109I GCAGC 1 cut(s) 242
MaeI CTAG 2 cut(s) 51, 277
MaeIII GTNAC 2 cut(s) 119, 272
MalI GATC 4 cut(s) 24, 60, 180, 222
MboI GATC 4 cut(s) 22, 58, 178, 220
MboII GAAGA 2 cut(s) 166, 169
MflI RGATCY 1 cut(s) 178
MluCI AATT 2 cut(s) 100, 110
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeII GATC 4 cut(s) 22, 58, 178, 220
NlaIII CATG 2 cut(s) 172, 220
NlaIV GGNNCC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 170
NspI RCATGY 1 cut(s) 172
PaeI GCATGC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 130
PsrI GAACNNNNNNTAC 2 cut(s) 112, 144
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 173
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 4 cut(s) 22, 58, 178, 220
ScaI AGTACT 1 cut(s) 136
SetI ASST 3 cut(s) 56, 235, 258
SmiMI CAYNNNNRTG 1 cut(s) 173
SphI GCATGC 1 cut(s) 172
Sse9I AATT 2 cut(s) 100, 110
SspMI CTAG 2 cut(s) 51, 277
TasI AATT 2 cut(s) 100, 110
TatI WGTACW 1 cut(s) 134
TscAI CASTG 1 cut(s) 180
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 17, 21, 92
TspRI CASTG 1 cut(s) 180
XapI RAATTY 1 cut(s) 100
XceI RCATGY 1 cut(s) 172
XspI CTAG 2 cut(s) 51, 277
ZrmI AGTACT 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.