Prupe.5G036900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015995
Physical Location & Seq
Reverse (-)
4168703 .. 4171201
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G036900.1

Sequence Viewer

Length: 600 bp
ATGGATGGCAGAATCCAGTCTCACAATTCATCCATGCCTCTAGTGTCCAGGTTGGATCATTTGGATTTCATTATGAAGTATCTGGAAAGAAAACAAAAGTTTGCAAAATTGGGTAGCAATGGTTCGAGTGGTGCAAAATTGAAGGGGCAATGCCTGCCAATGGATTTGGCATTGAAGGAGACTTACTTCAAAGGCTCACTCTTGGATCGAGTGGCAGCTCTTGAACATAGGCTTTTTCAGTTGTGCTTAGAGATGGATTCAAGCAGCAGCTCATCATGCACTTCTACACAAGCATCAGGGAATACCTATTGGAGCCATGGATCCAAGGGGGAATCATCTTGCTCATTCCCAACTTTCACCTCCAATCCCTATCAAGGTCACAATAAAAGAATATCCCAAGTCCATGCCACCAGGCTTGAAATTGAGGAACAACCTGATGGAGAGCACCCAGACCAGAAGCCTCCAACTACTTGTTCTGCTCAAACCCAACTTATTAAGAAGAAGAAGAAGAACCAGACCAGCAAAGATGAAAATCCTTGCCCAAATGGGAAGAAGAAAACCTCTTCCAATTGGCCATACTTGAAATTATTAGGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.17

Weight (kDa)

9.21

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46795
fragaria_vesca FvH4_5g22030
prunus_persica Prupe.5G036900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209671
rosa_laevigata RLG00000002967 RLG00000003105
rosa_roxburghii Rroxscaffold_3G00249160
rosa_rugosa Rorug07G0115200 Rorug07G0115300
rosa_samantha Rh5BG034200 Rh7AG248900 Rh7BG242900 Rh7CG264800 Rh7DG254800
rosa_wichuraiana Rw7G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 63, 213, 315, 328
AcoI YGGCCR 1 cut(s) 572
AfiI CCNNNNNNNGG 2 cut(s) 160, 374
AgsI TTSAA 7 cut(s) 142, 175, 190, 224, 261, 419, 583
AjnI CCWGG 2 cut(s) 47, 410
AjuI GAANNNNNNNTTGG 2 cut(s) 457, 489
AluBI AGCT 2 cut(s) 218, 270
AluI AGCT 2 cut(s) 218, 270
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 2 cut(s) 24, 173
AlwI GGATC 4 cut(s) 63, 213, 315, 328
AoxI GGCC 1 cut(s) 572
ApeKI GCWGC 4 cut(s) 215, 264, 267, 594
AsuHPI GGTGA 1 cut(s) 349
BalI TGGCCA 1 cut(s) 574
BamHI GGATCC 1 cut(s) 320
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 227, 276, 279, 581
BccI CCATC 2 cut(s) 247, 431
BciT130I CCWGG 2 cut(s) 49, 412
BcoDI GTCTC 2 cut(s) 24, 173
BfaI CTAG 2 cut(s) 41, 598
BisI GCNGC 4 cut(s) 216, 265, 268, 595
BlsI GCNGC 4 cut(s) 217, 266, 269, 596
Bme1390I CCNGG 2 cut(s) 49, 412
BmiI GGNNCC 2 cut(s) 314, 322
BmrFI CCNGG 2 cut(s) 49, 412
BmsI GCATC 1 cut(s) 302
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 316, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 374
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 2 cut(s) 124, 155
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 2 cut(s) 49, 412
BseDI CCNNGG 2 cut(s) 316, 324
BseGI GGATG 2 cut(s) 10, 29
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 160, 374
BseMI GCAATG 2 cut(s) 124, 155
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 4 cut(s) 227, 276, 279, 581
BshFI GGCC 1 cut(s) 574
BsiHKAI GWGCWC 1 cut(s) 447
BslI CCNNNNNNNGG 2 cut(s) 160, 374
BsmAI GTCTC 2 cut(s) 24, 173
BsnI GGCC 1 cut(s) 574
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 3 cut(s) 55, 205, 320
Bsp19I CCATGG 1 cut(s) 316
BspANI GGCC 1 cut(s) 574
BspLI GGNNCC 2 cut(s) 314, 322
BspPI GGATC 4 cut(s) 63, 213, 315, 328
BsrDI GCAATG 2 cut(s) 124, 155
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 316, 324
BssMI GATC 3 cut(s) 55, 205, 320
BssT1I CCWWGG 2 cut(s) 316, 324
Bst2UI CCWGG 2 cut(s) 49, 412
Bst6I CTCTTC 1 cut(s) 568
BstAPI GCANNNNNTGC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 247
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 2 cut(s) 10, 29
BstKTI GATC 3 cut(s) 58, 208, 323
BstMAI GTCTC 2 cut(s) 24, 173
BstMBI GATC 3 cut(s) 55, 205, 320
BstMWI GCNNNNNNNGC 2 cut(s) 154, 276
BstNI CCWGG 2 cut(s) 49, 412
BstSCI CCNGG 2 cut(s) 47, 410
BstV1I GCAGC 4 cut(s) 227, 276, 279, 581
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 1 cut(s) 574
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 2 cut(s) 10, 29
Cac8I GCNNGC 1 cut(s) 155
CspCI CAANNNNNGTGG 2 cut(s) 397, 432
CviAII CATG 4 cut(s) 34, 276, 317, 404
CviJI RGCY 9 cut(s) 195, 218, 232, 270, 315, 415, 460, 574, 594
CviKI_1 RGCY 9 cut(s) 195, 218, 232, 270, 315, 415, 460, 574, 594
DdeI CTNAG 1 cut(s) 247
DpnI GATC 3 cut(s) 57, 207, 322
DpnII GATC 3 cut(s) 55, 205, 320
EaeI YGGCCR 1 cut(s) 572
Eam1104I CTCTTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 568
Eco130I CCWWGG 2 cut(s) 316, 324
EcoRII CCWGG 2 cut(s) 47, 410
EcoT14I CCWWGG 2 cut(s) 316, 324
ErhI CCWWGG 2 cut(s) 316, 324
FaeI CATG 4 cut(s) 37, 279, 320, 407
FaiI YATR 7 cut(s) 35, 74, 228, 277, 318, 405, 577
FatI CATG 4 cut(s) 33, 275, 316, 403
Fnu4HI GCNGC 4 cut(s) 216, 265, 268, 595
FokI GGATG 2 cut(s) 16, 17
Fsp4HI GCNGC 4 cut(s) 216, 265, 268, 595
FspBI CTAG 2 cut(s) 41, 598
GluI GCNGC 4 cut(s) 216, 265, 268, 595
HaeIII GGCC 1 cut(s) 574
Hin1II CATG 4 cut(s) 37, 279, 320, 407
HinfI GANTC 3 cut(s) 12, 257, 332
HphI GGTGA 1 cut(s) 349
Hpy188III TCNNGA 2 cut(s) 83, 221
HpyAV CCTTC 2 cut(s) 136, 169
HpyCH4V TGCA 3 cut(s) 104, 134, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 276
HpyF3I CTNAG 1 cut(s) 247
Hsp92II CATG 4 cut(s) 37, 279, 320, 407
Kzo9I GATC 3 cut(s) 55, 205, 320
LmnI GCTCC 1 cut(s) 312
Lsp1109I GCAGC 4 cut(s) 227, 276, 279, 581
LweI GCATC 1 cut(s) 302
MaeI CTAG 2 cut(s) 41, 598
MaeIII GTNAC 1 cut(s) 377
MalI GATC 3 cut(s) 57, 207, 322
MboI GATC 3 cut(s) 55, 205, 320
MboII GAAGA 7 cut(s) 511, 514, 517, 520, 555, 562, 565
MfeI CAATTG 1 cut(s) 568
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 1 cut(s) 447
MlsI TGGCCA 1 cut(s) 574
MluCI AATT 6 cut(s) 25, 107, 137, 420, 568, 584
MluNI TGGCCA 1 cut(s) 574
MmeI TCCRAC 2 cut(s) 33, 488
MnlI CCTC 5 cut(s) 48, 370, 418, 471, 571
Mox20I TGGCCA 1 cut(s) 574
MscI TGGCCA 1 cut(s) 574
MseI TTAA 1 cut(s) 495
Msp20I TGGCCA 1 cut(s) 574
MspR9I CCNGG 2 cut(s) 49, 412
MunI CAATTG 1 cut(s) 568
MvaI CCWGG 2 cut(s) 49, 412
MwoI GCNNNNNNNGC 2 cut(s) 154, 276
NcoI CCATGG 1 cut(s) 316
NdeII GATC 3 cut(s) 55, 205, 320
NlaIII CATG 4 cut(s) 37, 279, 320, 407
NlaIV GGNNCC 2 cut(s) 314, 322
NmuCI GTSAC 1 cut(s) 377
PfeI GAWTC 3 cut(s) 12, 257, 332
PkrI GCNGC 4 cut(s) 217, 266, 269, 596
Psp6I CCWGG 2 cut(s) 47, 410
PspGI CCWGG 2 cut(s) 47, 410
PspN4I GGNNCC 2 cut(s) 314, 322
PsrI GAACNNNNNNTAC 2 cut(s) 106, 138
PsuI RGATCY 1 cut(s) 320
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 4 cut(s) 216, 265, 268, 595
Sau3AI GATC 3 cut(s) 55, 205, 320
ScrFI CCNGG 2 cut(s) 49, 412
SduI GDGCHC 1 cut(s) 447
SetI ASST 8 cut(s) 53, 220, 272, 308, 362, 379, 436, 563
SfaNI GCATC 1 cut(s) 302
Sse9I AATT 6 cut(s) 25, 107, 137, 420, 568, 584
SspMI CTAG 2 cut(s) 41, 598
StyD4I CCNGG 2 cut(s) 47, 410
StyI CCWWGG 2 cut(s) 316, 324
TaqI TCGA 2 cut(s) 125, 208
TasI AATT 6 cut(s) 25, 107, 137, 420, 568, 584
TfiI GAWTC 3 cut(s) 12, 257, 332
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 4 cut(s) 215, 264, 267, 594
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 4 cut(s) 18, 58, 89, 543
XspI CTAG 2 cut(s) 41, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.