Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007990

Physical Location & Seq

Genomic Coordinates Forward (+)

19005547 .. 19007770

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGGGGAAGAAGAAATCGAAGGTAACGGAGCCGGAATCTCAAAACGATGAATCTCAGACAATCTTCTCCACTCTCTTCTCCGGCGAGGTTGAAAGCTCTGGCTTTGCGAGTCTCTTCTCCGCTGATAACCCTTTCCGGCGAAAACAACCTCAAGAAATCAAAGAGTCGTCAATTCCTGATGAGAAGAAAGGGGATAAACGAAATGCAGAGAACGAAGAAGAAGAAGAAGAAACAGATTTGCCTGTGAAGACGAAGAAATCTAAAAAGGAAAAAAAGCTTACAGATTCCGGCGACGAGAAAGAGACGATTTCGGAGGCTGTAGAAGAAAGTGGGTTGGTTTCAAAGAGGAAGAAGAGGAAGAGAGATGAGATTGAGAACGAATACGAGACGAAGAAGTATGGAAGCGTTGAGATGAAAGAGAAGAAGGTTGGTGAGAAGAGGAAGAAAGCTGATGAAGTAGCTGATACAATGGTTTCAAAGGAAGGTTTTGATGATGAGAGTAAGCTTCTTAGAACTGTTTTCGTTGGGAATTTGCCTTTGAAGGTTAAGAAAAAAGTCATCTTGAAGGAGTTTAGTAAATTTGGTGAGGTTGAATCTGTGAGGATACGCTCTGTGCCTATTGTTGATTCGAAGAGGACAAGGAAAGGAGCTATAATGCTGAAACAAATCAATGAGAAAGCTTCAAGTGTTCATGCTTATGTTGTGTTTGAAACAGAGCAATCTGCTGCAGCTTCTCTGGCACATAACATGTCTCTGATTGATGGGAATCATGTCCGCGTTGATAGAGCATGTCCGCCTCGTAAGAAACAGAAAGGGCATGATGATACTCATTTGTATGATCCTAAGAGGACAGTCTTTATGGGTAATCTCCCTTTCGATGTGAAGGACGAGGAAGTGTATCAACTGTTTACGGGTAAGAGTAATCTGGAGAACAGTATAGAAGCTGTTCGTGTCATTAGAGATCCTCACTTGAACATTGGGAAAGGAATAGCTTACGTCTTGTTTAAAACACGGGAAGCTGCAAATCTCGTACTCAAGAAAGGATACTTGAAGCTTAGAGAAAGAGAGTTACGGATTTCTCGAGTCAAACCTGATACGCCATCAAAGAGAAAGAGCAATCCGTCTGAAGCTTACTCGCCGGCCCAGAAAAGACTGCAGAAGGACAAAGTGGTCACACCAACTCCAACAGGGAAGGCTAATCTTTCATATCAAGGTGTACGAGCTTCAAAATCTGGTGATGATAAGAAAACACCTTATCAGAAAAGCTCCGCGCAGACAAAGATGAGACCTAGAGGTAGCAGCAGCAATGACAACAAAAAATCTGGGAATAATAGTGCTTCAAAGGAAAGAAGTCAGAAGCGACCAGCTGTTGCAGCAAGAAAGGCGAAAGCAAACGCAAAAGGTTCAAAAGAGAGCGGTGGTAAGCGGTTTGCAGGGACAAAGCGTAAACAAGAAAACCGGACGCCTGAAAGCTTCTCTAAGAAGAAAAAAACAAAACGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

501

Amino Acids

56.5

Weight (kDa)

9.86

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	148 - 219	3.3e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46840 AT5G46840
fragaria_vesca	FvH4_5g22460
malus_domestica	MD06G1037000.v1.1 MD16G1272400.v1.1
prunus_persica	Prupe.5G032300_v2.0.a1
pyrus_communis	pycom06g03030 pycom16g24140
rosa_chinensis	RchiOBHm_Chr7g0210251
rosa_laevigata	RLG00000003055
rosa_multiflora	Rmu_co8157162.1_g000001 Rmu_sc0017046.1_g000009 Rmu_sc0018755.1_g000001 Rmu_sc0019437.1_g000002 Rmu_sc0032647.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248520
rosa_rugosa	Rorug07G0120000
rosa_samantha	Rh7AG252900 Rh7BG248000 Rh7CG269900 Rh7DG260500
rosa_wichuraiana	Rw7G021510 Rw7G021530 Rw7G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1169
AccBSI	CCGCTC	1 cut(s)	1416
AccII	CGCG	2 cut(s)	777, 1271
AciI	CCGC	6 cut(s)	120, 775, 794, 1269, 1416, 1426
AclWI	GGATC	2 cut(s)	833, 956
AcsI	RAATTY	2 cut(s)	529, 578
AcuI	CTGAAG	1 cut(s)	1146
AcyI	GRCGYC	1 cut(s)	1463
AfaI	GTAC	2 cut(s)	1032, 1218
AflIII	ACRYGT	1 cut(s)	747
Alw26I	GTCTC	5 cut(s)	116, 296, 380, 756, 1279
AlwI	GGATC	2 cut(s)	833, 956
Ama87I	CYCGRG	1 cut(s)	1080
AoxI	GGCC	1 cut(s)	1140
ApeKI	GCWGC	6 cut(s)	725, 728, 1019, 1299, 1302, 1373
ApoI	RAATTY	2 cut(s)	529, 578
Asp700I	GAANNNNTTC	1 cut(s)	945
AspLEI	GCGC	1 cut(s)	1273
AspS9I	GGNCC	1 cut(s)	1141
AsuHPI	GGTGA	3 cut(s)	443, 596, 1247
AsuII	TTCGAA	1 cut(s)	629
AvaI	CYCGRG	1 cut(s)	1080
BaeI	ACNNNNGTAYC	2 cut(s)	456, 489
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	6 cut(s)	712, 740, 1006, 1311, 1314, 1385
BccI	CCATC	2 cut(s)	755, 1108
BciVI	GTATCC	2 cut(s)	597, 1037
BcoDI	GTCTC	5 cut(s)	116, 296, 380, 756, 1279
BfaI	CTAG	1 cut(s)	1290
BfmI	CTRYAG	3 cut(s)	318, 726, 1154
BfuI	GTATCC	2 cut(s)	597, 1037
BisI	GCNGC	6 cut(s)	726, 729, 1020, 1300, 1303, 1374
BlsI	GCNGC	6 cut(s)	727, 730, 1021, 1301, 1304, 1375
BmeT110I	CYCGRG	1 cut(s)	1080
BmgT120I	GGNCC	1 cut(s)	1141
BmiI	GGNNCC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	947
Bpu14I	TTCGAA	1 cut(s)	629
BpuEI	CTTGAG	2 cut(s)	135, 1019
BsaBI	GATNNNNATC	1 cut(s)	765
BsaHI	GRCGYC	1 cut(s)	1463
BsaI	GGTCTC	1 cut(s)	1279
BsaWI	WCCGGW	1 cut(s)	1458
BsaXI	ACNNNNNCTCC	2 cut(s)	1165, 1195
Bse118I	RCCGGY	1 cut(s)	1138
Bse3DI	GCAATG	1 cut(s)	1312
Bse8I	GATNNNNATC	1 cut(s)	765
BseJI	GATNNNNATC	1 cut(s)	765
BseMI	GCAATG	1 cut(s)	1312
BseMII	CTCAG	1 cut(s)	68
BseXI	GCAGC	6 cut(s)	712, 740, 1006, 1311, 1314, 1385
Bsh1236I	CGCG	2 cut(s)	777, 1271
BshFI	GGCC	1 cut(s)	1142
BsiHKCI	CYCGRG	1 cut(s)	1080
BsiSI	CCGG	6 cut(s)	32, 81, 136, 288, 1139, 1459
BslFI	GGGAC	1 cut(s)	1450
BsmAI	GTCTC	5 cut(s)	116, 296, 380, 756, 1279
BsmBI	CGTCTC	2 cut(s)	296, 380
BsmFI	GGGAC	1 cut(s)	1450
BsnI	GGCC	1 cut(s)	1142
Bso31I	GGTCTC	1 cut(s)	1279
BsoBI	CYCGRG	1 cut(s)	1080
Bsp119I	TTCGAA	1 cut(s)	629
Bsp143I	GATC	2 cut(s)	838, 961
BspACI	CCGC	6 cut(s)	120, 775, 794, 1269, 1416, 1426
BspANI	GGCC	1 cut(s)	1142
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	2 cut(s)	777, 1271
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	2 cut(s)	730, 1158
BspPI	GGATC	2 cut(s)	833, 956
BspT104I	TTCGAA	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	1279
BsrBI	CCGCTC	1 cut(s)	1416
BsrDI	GCAATG	1 cut(s)	1312
BsrFI	RCCGGY	1 cut(s)	1138
BssAI	RCCGGY	1 cut(s)	1138
BssMI	GATC	2 cut(s)	838, 961
BssNI	GRCGYC	1 cut(s)	1463
Bst4CI	ACNGT	5 cut(s)	517, 853, 906, 935, 1500
Bst6I	CTCTTC	6 cut(s)	80, 119, 347, 353, 431, 626
BstACI	GRCGYC	1 cut(s)	1463
BstBI	TTCGAA	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	1140
BstDEI	CTNAG	5 cut(s)	54, 509, 843, 1055, 1479
BstFNI	CGCG	2 cut(s)	777, 1271
BstHHI	GCGC	1 cut(s)	1273
BstKTI	GATC	2 cut(s)	841, 964
BstMAI	GTCTC	5 cut(s)	116, 296, 380, 756, 1279
BstMBI	GATC	2 cut(s)	838, 961
BstMWI	GCNNNNNNNGC	3 cut(s)	737, 1373, 1382
BstNSI	RCATGY	2 cut(s)	751, 792
BstSFI	CTRYAG	3 cut(s)	318, 726, 1154
BstUI	CGCG	2 cut(s)	777, 1271
BstV1I	GCAGC	6 cut(s)	712, 740, 1006, 1311, 1314, 1385
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	961
BstYI	RGATCY	1 cut(s)	961
BsuI	GTATCC	2 cut(s)	597, 1037
BsuRI	GGCC	1 cut(s)	1142
Cac8I	GCNNGC	1 cut(s)	1140
CfoI	GCGC	1 cut(s)	1273
Cfr10I	RCCGGY	1 cut(s)	1138
Cfr13I	GGNCC	1 cut(s)	1141
CseI	GACGC	1 cut(s)	1471
Csp6I	GTAC	2 cut(s)	1031, 1217
CviAII	CATG	5 cut(s)	692, 748, 770, 789, 818
CviQI	GTAC	2 cut(s)	1031, 1217
DdeI	CTNAG	5 cut(s)	54, 509, 843, 1055, 1479
DpnI	GATC	2 cut(s)	840, 963
DpnII	GATC	2 cut(s)	838, 961
DraI	TTTAAA	1 cut(s)	1006
DrdI	GACNNNNNNGTC	1 cut(s)	1169
DseDI	GACNNNNNNGTC	1 cut(s)	1169
Eam1104I	CTCTTC	6 cut(s)	80, 119, 347, 353, 431, 626
EarI	CTCTTC	6 cut(s)	80, 119, 347, 353, 431, 626
EciI	GGCGGA	1 cut(s)	783
Eco31I	GGTCTC	1 cut(s)	1279
Eco57I	CTGAAG	1 cut(s)	1146
Eco88I	CYCGRG	1 cut(s)	1080
Esp3I	CGTCTC	2 cut(s)	296, 380
FaeI	CATG	5 cut(s)	695, 751, 773, 792, 821
FaqI	GGGAC	1 cut(s)	1450
FatI	CATG	5 cut(s)	691, 747, 769, 788, 817
Fnu4HI	GCNGC	6 cut(s)	726, 729, 1020, 1300, 1303, 1374
Fsp4HI	GCNGC	6 cut(s)	726, 729, 1020, 1300, 1303, 1374
FspBI	CTAG	1 cut(s)	1290
GlaI	GCGC	1 cut(s)	1272
GluI	GCNGC	6 cut(s)	726, 729, 1020, 1300, 1303, 1374
GsuI	CTGGAG	1 cut(s)	947
HaeIII	GGCC	1 cut(s)	1142
HapII	CCGG	6 cut(s)	32, 81, 136, 288, 1139, 1459
HgaI	GACGC	1 cut(s)	1471
HhaI	GCGC	1 cut(s)	1273
Hin1I	GRCGYC	1 cut(s)	1463
Hin1II	CATG	5 cut(s)	695, 751, 773, 792, 821
Hin6I	GCGC	1 cut(s)	1271
HinP1I	GCGC	1 cut(s)	1271
HindIII	AAGCTT	6 cut(s)	275, 503, 678, 1052, 1128, 1471
HinfI	GANTC	9 cut(s)	35, 50, 109, 164, 284, 593, 626, 766, 1083
HpaII	CCGG	6 cut(s)	32, 81, 136, 288, 1139, 1459
HphI	GGTGA	3 cut(s)	443, 596, 1247
Hpy166II	GTNNAC	3 cut(s)	909, 1217, 1448
Hpy188I	TCNGA	6 cut(s)	57, 313, 756, 1126, 1260, 1356
Hpy188III	TCNNGA	6 cut(s)	152, 176, 562, 926, 1036, 1080
Hpy8I	GTNNAC	3 cut(s)	909, 1217, 1448
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	8 cut(s)	13, 418, 476, 535, 559, 877, 1153, 1186
HpyCH4III	ACNGT	5 cut(s)	517, 853, 906, 935, 1500
HpyCH4IV	ACGT	1 cut(s)	996
HpyCH4V	TGCA	6 cut(s)	206, 728, 1022, 1156, 1373, 1433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	737, 1373, 1382
HpyF3I	CTNAG	5 cut(s)	54, 509, 843, 1055, 1479
HpySE526I	ACGT	1 cut(s)	996
Hsp92I	GRCGYC	1 cut(s)	1463
Hsp92II	CATG	5 cut(s)	695, 751, 773, 792, 821
HspAI	GCGC	1 cut(s)	1271
KroI	GCCGGC	1 cut(s)	1138
KroNI	GCCGGC	1 cut(s)	1140
Kzo9I	GATC	2 cut(s)	838, 961
LmnI	GCTCC	3 cut(s)	28, 647, 1271
Lsp1109I	GCAGC	6 cut(s)	712, 740, 1006, 1311, 1314, 1385
MaeI	CTAG	1 cut(s)	1290
MaeII	ACGT	1 cut(s)	996
MaeIII	GTNAC	3 cut(s)	22, 1068, 1171
MalI	GATC	2 cut(s)	840, 963
MbiI	CCGCTC	1 cut(s)	1416
MboI	GATC	2 cut(s)	838, 961
MflI	RGATCY	1 cut(s)	961
MluCI	AATT	3 cut(s)	171, 529, 578
MlyI	GAGTC	3 cut(s)	118, 173, 1092
MmeI	TCCRAC	1 cut(s)	1208
MroNI	GCCGGC	1 cut(s)	1138
MroXI	GAANNNNTTC	1 cut(s)	945
MseI	TTAA	2 cut(s)	546, 1005
MslI	CAYNNNNRTG	2 cut(s)	696, 834
MspA1I	CMGCKG	2 cut(s)	122, 1367
MspI	CCGG	6 cut(s)	32, 81, 136, 288, 1139, 1459
MvnI	CGCG	2 cut(s)	777, 1271
MwoI	GCNNNNNNNGC	3 cut(s)	737, 1373, 1382
NaeI	GCCGGC	1 cut(s)	1140
NdeII	GATC	2 cut(s)	838, 961
NgoMIV	GCCGGC	1 cut(s)	1138
NlaIII	CATG	5 cut(s)	695, 751, 773, 792, 821
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	1171
NspI	RCATGY	2 cut(s)	751, 792
NspV	TTCGAA	1 cut(s)	629
PaeR7I	CTCGAG	1 cut(s)	1080
PciI	ACATGT	1 cut(s)	747
PcsI	WCGNNNNNNNCGW	1 cut(s)	1078
PdiI	GCCGGC	1 cut(s)	1140
PdmI	GAANNNNTTC	1 cut(s)	945
PfeI	GAWTC	6 cut(s)	35, 50, 284, 593, 626, 766
PkrI	GCNGC	6 cut(s)	727, 730, 1021, 1301, 1304, 1375
PleI	GAGTC	3 cut(s)	117, 172, 1091
PpsI	GAGTC	3 cut(s)	117, 172, 1091
PscI	ACATGT	1 cut(s)	747
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	1141
PstI	CTGCAG	2 cut(s)	730, 1158
PsuI	RGATCY	1 cut(s)	961
PvuII	CAGCTG	1 cut(s)	1367
RsaI	GTAC	2 cut(s)	1032, 1218
RsaNI	GTAC	2 cut(s)	1031, 1217
RseI	CAYNNNNRTG	2 cut(s)	696, 834
SaqAI	TTAA	2 cut(s)	546, 1005
SatI	GCNGC	6 cut(s)	726, 729, 1020, 1300, 1303, 1374
Sau3AI	GATC	2 cut(s)	838, 961
Sau96I	GGNCC	1 cut(s)	1141
SchI	GAGTC	3 cut(s)	118, 173, 1092
SfcI	CTRYAG	3 cut(s)	318, 726, 1154
Sfr274I	CTCGAG	1 cut(s)	1080
SfuI	TTCGAA	1 cut(s)	629
SlaI	CTCGAG	1 cut(s)	1080
SmiMI	CAYNNNNRTG	2 cut(s)	696, 834
SmlI	CTYRAG	3 cut(s)	150, 1034, 1080
SmoI	CTYRAG	3 cut(s)	150, 1034, 1080
Sse9I	AATT	3 cut(s)	171, 529, 578
SsiI	CCGC	6 cut(s)	120, 775, 794, 1269, 1416, 1426
SspMI	CTAG	1 cut(s)	1290
TaaI	ACNGT	5 cut(s)	517, 853, 906, 935, 1500
TaiI	ACGT	1 cut(s)	999
TaqI	TCGA	4 cut(s)	17, 629, 876, 1081
TasI	AATT	3 cut(s)	171, 529, 578
TfiI	GAWTC	6 cut(s)	35, 50, 284, 593, 626, 766
Tru1I	TTAA	2 cut(s)	546, 1005
Tru9I	TTAA	2 cut(s)	546, 1005
TseFI	GTSAC	1 cut(s)	1171
TseI	GCWGC	6 cut(s)	725, 728, 1019, 1299, 1302, 1373
Tsp45I	GTSAC	1 cut(s)	1171
TspDTI	ATGAA	5 cut(s)	63, 428, 468, 680, 1194
TspGWI	ACGGA	3 cut(s)	41, 1087, 1110
XapI	RAATTY	2 cut(s)	529, 578
XceI	RCATGY	2 cut(s)	751, 792
XhoI	CTCGAG	1 cut(s)	1080
XmnI	GAANNNNTTC	1 cut(s)	945
XspI	CTAG	1 cut(s)	1290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.