Prupe.5G032300_v2.0.a1

RNA-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
3693826 .. 3697387
3562 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G032300.1

Sequence Viewer

Length: 1653 bp
ATGGGTAGGAAGAAACCCAAGGAGCCAGAAAGCGTCGCCGTTTCAGCTCAGCCAGACATTTTCAAGACCCTATTCGGCGACGCCACTAGCGACGACGCCGTCCCTTCCATATTCTCTGAAAGCAACCCGTTCAGGAGGACGAACCAGGAACCCGGGTTAGGGTTTGTTGCTCCTTCAGTTGAAGCTGCGGAAAACGTTAACCATGGTGATTCTGAGAACAGTGGTGATGACGGTGAGGTGAAAAAGAGGAAGAGAAGGAAAGAGAAGAAAGCTCCTGGTTTGGTTAATGAAGAAGCTTCAGAGACTCCTTTGGAGGGCAAGAAAGTCAAGAAAAAGAAACTGCAAGAAACACCCAATTTGGAAAACCCTAATTTGGGTTATGAGTTAAATGGGGTATCAAAGAAGGGCAACGGTGAAGCCTCCAACTTGGGAGAACGCCCAAATATGGGTGTTGAAACAAAAGGCGGTGATGGAATGAGTGCGGTGAAGAAGATGGATGGGAAGAAGAGGAAAAGAGATGAGCTTGAGAGGGAATACGAGGCAAAGAAGTATGGTGTGAAGGAGAGCGAGGATGTTGGAGACAAGGATGTGGGTGCAAAAGTTGTTGGGGAGAAAAGGAAGATGGTGGATAATCCAGCTGATATGTTGGTTTCGAATGAAGGTTTCGACGATGAGAGTAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCCTTGAAAGTCAAGAAGAAGGTTTTGATCAAGGAGTTCAGTAAATTTGGAGAGGTGGAGTCTGTAAGGATTCGTTCTGTGCCAATCTTGGAGACCAAAAAACCTAGAAAGGGAGCAATACTTACGAATCAAATCCATGATAAAGCTGACAGTGTTAATGGCTACATTGTTTTCAGAACAGAGGAATCTGCACAGGCTTCTTTGTCCCATAACATGGCTGTGGTTGAAGGACATCATATCCGTGTTGACAGGGCATGCCCACCTCGTAAGAAACTGAAAGGGGAGAGTGCTGCTGTATATGATCACACAAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTGAAGGATGAAGAAGTTTATCAGTTGTTTTGTGGTATTAACAATATGGAATCCAACGTTGAAGCTATTCGCATAATCAGGGATCCTAACTATGGTATCGGAAAGGGCATTGCTTATGTTTTGTTTAGAACAAGGGAAGCTGCAAATTTGGTTGTTAAGAAGCGAAACTTGAAGCTTGGGGATCGGGAGCTCAGGCTCTCTCATGCAAAACCAGATTCTACCCCGTCCAAGAGAAAGAATCCCTCATCTGGATCGAAAGCTAATTCCCCAGCCAAAAAGCTGGCAGTGGGTTCAAGGACCCCAGATTTTAACAAGGTGGGTTCAAAGGCTACCAAGTCCTACCAGGGCATGCGTGCAGGTAAGCCTGGTGTCCAAAAGAAATTTCATTCAAAAAGCAGTAGACAAGATACGTTCGAATCAAGATCTCAGAGTGGAGTGAAGCCGAAAGAACGTAAAGACAAACGACCATCTGTTGCTGCCAGAAAAGCTAAAGCATCATTCGAAGGTGGTGCTGCAAAACAAACAGGTATAAAGCGTAAGATGGATAGCCGAACTCCAGAGAGCTCCCAGCAGAAGAAGAAATTCAAGAAATATAGGTAG

Protein Analysis

551

Amino Acids

60.87

Weight (kDa)

9.85

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 1400
AccB7I CCANNNNNTGG 1 cut(s) 925
AccI GTMKAC 1 cut(s) 1453
AciI CCGC 3 cut(s) 188, 465, 482
AclI AACGTT 2 cut(s) 195, 1110
AclWI GGATC 4 cut(s) 1130, 1143, 1242, 1312
AcsI RAATTY 5 cut(s) 706, 755, 1198, 1433, 1634
AcuI CTGAAG 2 cut(s) 159, 282
AcyI GRCGYC 2 cut(s) 81, 96
AjnI CCWGG 4 cut(s) 144, 274, 1395, 1417
AjuI GAANNNNNNNTTGG 2 cut(s) 1419, 1451
Alw21I GWGCWC 2 cut(s) 1245, 1619
Alw26I GTCTC 3 cut(s) 296, 573, 797
AlwI GGATC 4 cut(s) 1130, 1143, 1242, 1312
Ama87I CYCGRG 1 cut(s) 152
ApeKI GCWGC 5 cut(s) 185, 1001, 1193, 1529, 1565
ApoI RAATTY 5 cut(s) 706, 755, 1198, 1433, 1634
Asp700I GAANNNNTTC 2 cut(s) 1119, 1634
AspS9I GGNCC 1 cut(s) 1350
AsuC2I CCSGG 2 cut(s) 153, 154
AsuHPI GGTGA 7 cut(s) 218, 236, 245, 250, 425, 479, 496
AsuII TTCGAA 3 cut(s) 653, 1467, 1554
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 1350
BaeI ACNNNNGTAYC 2 cut(s) 1132, 1165
BamHI GGATCC 1 cut(s) 1135
BanII GRGCYC 2 cut(s) 1245, 1619
Bbv12I GWGCWC 2 cut(s) 1245, 1619
BbvI GCAGC 5 cut(s) 172, 988, 1180, 1516, 1552
BccI CCATC 6 cut(s) 464, 487, 491, 616, 1528, 1588
BceAI ACGGC 2 cut(s) 23, 83
BcgI CGANNNNNNTGC 2 cut(s) 1544, 1578
BciT130I CCWGG 4 cut(s) 146, 276, 1397, 1419
BclI TGATCA 2 cut(s) 738, 1012
BcnI CCSGG 2 cut(s) 153, 154
BcoDI GTCTC 3 cut(s) 296, 573, 797
BfaI CTAG 2 cut(s) 87, 816
BfuAI ACCTGC 1 cut(s) 1400
BglII AGATCT 1 cut(s) 1475
BisI GCNGC 5 cut(s) 186, 1002, 1194, 1530, 1566
BlpI GCTNAGC 1 cut(s) 48
BlsI GCNGC 5 cut(s) 187, 1003, 1195, 1531, 1567
Bme1390I CCNGG 6 cut(s) 146, 153, 154, 276, 1397, 1419
Bme18I GGWCC 1 cut(s) 1350
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 1350
BmiI GGNNCC 4 cut(s) 24, 150, 1137, 1352
BmrFI CCNGG 6 cut(s) 146, 153, 154, 276, 1397, 1419
BmsI GCATC 1 cut(s) 1556
BpmI CTGGAG 1 cut(s) 1593
Bpu10I CCTNAGC 1 cut(s) 1244
Bpu1102I GCTNAGC 1 cut(s) 48
Bpu14I TTCGAA 3 cut(s) 653, 1467, 1554
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 153, 154
BsaHI GRCGYC 2 cut(s) 81, 96
BsaI GGTCTC 1 cut(s) 797
BsaJI CCNNGG 4 cut(s) 18, 152, 202, 1396
Bse3DI GCAATG 1 cut(s) 1161
BseBI CCWGG 4 cut(s) 146, 276, 1397, 1419
BseDI CCNNGG 4 cut(s) 18, 152, 202, 1396
BseGI GGATG 4 cut(s) 502, 577, 592, 1066
BseMI GCAATG 1 cut(s) 1161
BseMII CTCAG 4 cut(s) 62, 204, 1258, 1493
BseXI GCAGC 5 cut(s) 172, 988, 1180, 1516, 1552
BseYI CCCAGC 2 cut(s) 1321, 1620
BsgI GTGCAG 2 cut(s) 885, 1428
BsiHKAI GWGCWC 2 cut(s) 1245, 1619
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 2 cut(s) 86, 901
BsmAI GTCTC 3 cut(s) 296, 573, 797
BsmFI GGGAC 2 cut(s) 86, 901
Bso31I GGTCTC 1 cut(s) 797
BsoBI CYCGRG 1 cut(s) 152
Bsp119I TTCGAA 3 cut(s) 653, 1467, 1554
Bsp1286I GDGCHC 2 cut(s) 1245, 1619
Bsp143I GATC 6 cut(s) 738, 1012, 1135, 1234, 1304, 1475
Bsp1720I GCTNAGC 1 cut(s) 48
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 3 cut(s) 188, 465, 482
BspCNI CTCAG 4 cut(s) 61, 205, 1257, 1492
BspLI GGNNCC 4 cut(s) 24, 150, 1137, 1352
BspMI ACCTGC 1 cut(s) 1400
BspPI GGATC 4 cut(s) 1130, 1143, 1242, 1312
BspT104I TTCGAA 3 cut(s) 653, 1467, 1554
BspTNI GGTCTC 1 cut(s) 797
BsrDI GCAATG 1 cut(s) 1161
BssECI CCNNGG 4 cut(s) 18, 152, 202, 1396
BssMI GATC 6 cut(s) 738, 1012, 1135, 1234, 1304, 1475
BssNI GRCGYC 2 cut(s) 81, 96
BssT1I CCWWGG 2 cut(s) 18, 202
Bst2UI CCWGG 4 cut(s) 146, 276, 1397, 1419
Bst4CI ACNGT 5 cut(s) 221, 233, 413, 863, 1027
Bst6I CTCTTC 2 cut(s) 245, 500
BstACI GRCGYC 2 cut(s) 81, 96
BstBI TTCGAA 3 cut(s) 653, 1467, 1554
BstC8I GCNNGC 4 cut(s) 967, 1335, 1403, 1407
BstDEI CTNAG 4 cut(s) 48, 213, 1244, 1479
BstDSI CCRYGG 1 cut(s) 202
BstEII GGTNACC 1 cut(s) 1037
BstF5I GGATG 4 cut(s) 502, 577, 592, 1066
BstKTI GATC 6 cut(s) 741, 1015, 1138, 1237, 1307, 1478
BstMAI GTCTC 3 cut(s) 296, 573, 797
BstMBI GATC 6 cut(s) 738, 1012, 1135, 1234, 1304, 1475
BstMWI GCNNNNNNNGC 2 cut(s) 44, 1538
BstNI CCWGG 4 cut(s) 146, 276, 1397, 1419
BstNSI RCATGY 2 cut(s) 969, 1405
BstPI GGTNACC 1 cut(s) 1037
BstSCI CCNGG 6 cut(s) 144, 151, 152, 274, 1395, 1417
BstV1I GCAGC 5 cut(s) 172, 988, 1180, 1516, 1552
BstX2I RGATCY 2 cut(s) 1135, 1475
BstXI CCANNNNNNTGG 1 cut(s) 1333
BstYI RGATCY 2 cut(s) 1135, 1475
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 4 cut(s) 502, 577, 592, 1066
BtsI GCAGTG 1 cut(s) 1344
BtsIMutI CAGTG 3 cut(s) 226, 868, 1344
BveI ACCTGC 1 cut(s) 1400
Cac8I GCNNGC 4 cut(s) 967, 1335, 1403, 1407
Cfr13I GGNCC 1 cut(s) 1350
Cfr9I CCCGGG 1 cut(s) 152
CseI GACGC 3 cut(s) 22, 89, 104
CviAII CATG 6 cut(s) 203, 848, 925, 966, 1256, 1402
DdeI CTNAG 4 cut(s) 48, 213, 1244, 1479
DpnI GATC 6 cut(s) 740, 1014, 1137, 1236, 1306, 1477
DpnII GATC 6 cut(s) 738, 1012, 1135, 1234, 1304, 1475
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 2 cut(s) 245, 500
EarI CTCTTC 2 cut(s) 245, 500
Ecl136II GAGCTC 2 cut(s) 1243, 1617
Eco130I CCWWGG 2 cut(s) 18, 202
Eco24I GRGCYC 2 cut(s) 1245, 1619
Eco31I GGTCTC 1 cut(s) 797
Eco47I GGWCC 1 cut(s) 1350
Eco53kI GAGCTC 2 cut(s) 1243, 1617
Eco57I CTGAAG 2 cut(s) 159, 282
Eco88I CYCGRG 1 cut(s) 152
Eco91I GGTNACC 1 cut(s) 1037
EcoICRI GAGCTC 2 cut(s) 1243, 1617
EcoO109I RGGNCCY 1 cut(s) 1350
EcoO65I GGTNACC 1 cut(s) 1037
EcoRII CCWGG 4 cut(s) 144, 274, 1395, 1417
EcoT14I CCWWGG 2 cut(s) 18, 202
EcoT38I GRGCYC 2 cut(s) 1245, 1619
ErhI CCWWGG 2 cut(s) 18, 202
FaeI CATG 6 cut(s) 206, 851, 928, 969, 1259, 1405
FalI AAGNNNNNCTT 2 cut(s) 1205, 1237
FaqI GGGAC 2 cut(s) 86, 901
FatI CATG 6 cut(s) 202, 847, 924, 965, 1255, 1401
FbaI TGATCA 2 cut(s) 738, 1012
FblI GTMKAC 1 cut(s) 1453
Fnu4HI GCNGC 5 cut(s) 186, 1002, 1194, 1530, 1566
FokI GGATG 4 cut(s) 509, 584, 599, 1073
FriOI GRGCYC 2 cut(s) 1245, 1619
Fsp4HI GCNGC 5 cut(s) 186, 1002, 1194, 1530, 1566
FspBI CTAG 2 cut(s) 87, 816
GluI GCNGC 5 cut(s) 186, 1002, 1194, 1530, 1566
GsaI CCCAGC 2 cut(s) 1325, 1624
GsuI CTGGAG 1 cut(s) 1593
HapII CCGG 1 cut(s) 153
HgaI GACGC 3 cut(s) 22, 89, 104
Hin1I GRCGYC 2 cut(s) 81, 96
Hin1II CATG 6 cut(s) 206, 851, 928, 969, 1259, 1405
HincII GTYRAC 2 cut(s) 199, 958
HindII GTYRAC 2 cut(s) 199, 958
HindIII AAGCTT 3 cut(s) 294, 680, 1226
HpaI GTTAAC 1 cut(s) 199
HpaII CCGG 1 cut(s) 153
HphI GGTGA 7 cut(s) 218, 236, 245, 250, 425, 479, 496
Hpy166II GTNNAC 3 cut(s) 199, 958, 1454
Hpy188I TCNGA 6 cut(s) 118, 214, 301, 887, 1154, 1482
Hpy188III TCNNGA 9 cut(s) 64, 133, 328, 724, 1238, 1302, 1473, 1610, 1639
Hpy8I GTNNAC 3 cut(s) 199, 958, 1454
Hpy99I CGWCG 5 cut(s) 38, 83, 95, 98, 671
HpyCH4III ACNGT 5 cut(s) 221, 233, 413, 863, 1027
HpyCH4IV ACGT 4 cut(s) 195, 1110, 1463, 1504
HpyCH4V TGCA 7 cut(s) 343, 596, 902, 1196, 1259, 1409, 1568
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 1538
HpyF3I CTNAG 4 cut(s) 48, 213, 1244, 1479
HpySE526I ACGT 4 cut(s) 195, 1110, 1463, 1504
Hsp92I GRCGYC 2 cut(s) 81, 96
Hsp92II CATG 6 cut(s) 206, 851, 928, 969, 1259, 1405
Ksp22I TGATCA 2 cut(s) 738, 1012
KspAI GTTAAC 1 cut(s) 199
Kzo9I GATC 6 cut(s) 738, 1012, 1135, 1234, 1304, 1475
LmnI GCTCC 6 cut(s) 22, 175, 277, 824, 1240, 1622
Lsp1109I GCAGC 5 cut(s) 172, 988, 1180, 1516, 1552
LweI GCATC 1 cut(s) 1556
MaeI CTAG 2 cut(s) 87, 816
MaeII ACGT 4 cut(s) 195, 1110, 1463, 1504
MaeIII GTNAC 1 cut(s) 1037
MalI GATC 6 cut(s) 740, 1014, 1137, 1236, 1306, 1477
MboI GATC 6 cut(s) 738, 1012, 1135, 1234, 1304, 1475
MflI RGATCY 2 cut(s) 1135, 1475
MhlI GDGCHC 2 cut(s) 1245, 1619
MluCI AATT 8 cut(s) 355, 370, 706, 755, 1198, 1315, 1433, 1634
MlyI GAGTC 2 cut(s) 298, 779
MmeI TCCRAC 3 cut(s) 447, 556, 1131
MroXI GAANNNNTTC 2 cut(s) 1119, 1634
MseI TTAA 7 cut(s) 198, 285, 386, 867, 1092, 1209, 1362
MslI CAYNNNNRTG 2 cut(s) 929, 951
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 6 cut(s) 146, 153, 154, 276, 1397, 1419
MvaI CCWGG 4 cut(s) 146, 276, 1397, 1419
MwoI GCNNNNNNNGC 2 cut(s) 44, 1538
NciI CCSGG 2 cut(s) 153, 154
NcoI CCATGG 1 cut(s) 202
NdeII GATC 6 cut(s) 738, 1012, 1135, 1234, 1304, 1475
NlaIII CATG 6 cut(s) 206, 851, 928, 969, 1259, 1405
NlaIV GGNNCC 4 cut(s) 24, 150, 1137, 1352
NspI RCATGY 2 cut(s) 969, 1405
NspV TTCGAA 3 cut(s) 653, 1467, 1554
PaeI GCATGC 2 cut(s) 969, 1405
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 2 cut(s) 1119, 1634
PfeI GAWTC 8 cut(s) 209, 781, 838, 896, 1103, 1268, 1291, 1469
PflFI GACNNNGTC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 925
PkrI GCNGC 5 cut(s) 187, 1003, 1195, 1531, 1567
PleI GAGTC 2 cut(s) 298, 778
PpsI GAGTC 2 cut(s) 298, 778
PpuMI RGGWCCY 1 cut(s) 1350
Psp124BI GAGCTC 2 cut(s) 1245, 1619
Psp1406I AACGTT 2 cut(s) 195, 1110
Psp5II RGGWCCY 1 cut(s) 1350
Psp6I CCWGG 4 cut(s) 144, 274, 1395, 1417
PspEI GGTNACC 1 cut(s) 1037
PspFI CCCAGC 2 cut(s) 1321, 1620
PspGI CCWGG 4 cut(s) 144, 274, 1395, 1417
PspN4I GGNNCC 4 cut(s) 24, 150, 1137, 1352
PspPI GGNCC 1 cut(s) 1350
PspPPI RGGWCCY 1 cut(s) 1350
PsuI RGATCY 2 cut(s) 1135, 1475
PsyI GACNNNGTC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 638
RseI CAYNNNNRTG 2 cut(s) 929, 951
SacI GAGCTC 2 cut(s) 1245, 1619
SaqAI TTAA 7 cut(s) 198, 285, 386, 867, 1092, 1209, 1362
SatI GCNGC 5 cut(s) 186, 1002, 1194, 1530, 1566
Sau3AI GATC 6 cut(s) 738, 1012, 1135, 1234, 1304, 1475
Sau96I GGNCC 1 cut(s) 1350
SchI GAGTC 2 cut(s) 298, 779
ScrFI CCNGG 6 cut(s) 146, 153, 154, 276, 1397, 1419
SduI GDGCHC 2 cut(s) 1245, 1619
SfaNI GCATC 1 cut(s) 1556
SfuI TTCGAA 3 cut(s) 653, 1467, 1554
SinI GGWCC 1 cut(s) 1350
SmaI CCCGGG 1 cut(s) 154
SmiMI CAYNNNNRTG 2 cut(s) 929, 951
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SphI GCATGC 2 cut(s) 969, 1405
Sse9I AATT 8 cut(s) 355, 370, 706, 755, 1198, 1315, 1433, 1634
SsiI CCGC 3 cut(s) 188, 465, 482
SspMI CTAG 2 cut(s) 87, 816
SstI GAGCTC 2 cut(s) 1245, 1619
StyD4I CCNGG 6 cut(s) 144, 151, 152, 274, 1395, 1417
StyI CCWWGG 2 cut(s) 18, 202
TaaI ACNGT 5 cut(s) 221, 233, 413, 863, 1027
TaiI ACGT 4 cut(s) 198, 1113, 1466, 1507
TaqI TCGA 5 cut(s) 653, 666, 1307, 1467, 1554
TasI AATT 8 cut(s) 355, 370, 706, 755, 1198, 1315, 1433, 1634
TfiI GAWTC 8 cut(s) 209, 781, 838, 896, 1103, 1268, 1291, 1469
Tru1I TTAA 7 cut(s) 198, 285, 386, 867, 1092, 1209, 1362
Tru9I TTAA 7 cut(s) 198, 285, 386, 867, 1092, 1209, 1362
TscAI CASTG 3 cut(s) 226, 868, 1344
TseI GCWGC 5 cut(s) 185, 1001, 1193, 1529, 1565
TspDTI ATGAA 4 cut(s) 303, 672, 1077, 1427
TspGWI ACGGA 1 cut(s) 941
TspMI CCCGGG 1 cut(s) 152
TspRI CASTG 3 cut(s) 226, 868, 1344
Tth111I GACNNNGTC 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 925
VpaK11BI GGWCC 1 cut(s) 1350
XapI RAATTY 5 cut(s) 706, 755, 1198, 1433, 1634
XceI RCATGY 2 cut(s) 969, 1405
XmaI CCCGGG 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 1453
XmnI GAANNNNTTC 2 cut(s) 1119, 1634
XspI CTAG 2 cut(s) 87, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.