Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8157162.1

Orthogroup ID

OG0007990

Physical Location & Seq

Genomic Coordinates Reverse (-)

18 .. 658

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8157162.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

gaagaagaagaagaagcttcagaggaggctgcattagagagcaagaagccgaagaaatcgaagaaggaaaaacccaatttggaaaaccctaatttgggttctgaaagcaaagaaaatgatgtggtgtccaatttggttttgggtttgggatcgaatgccgagaatgatccgaatttgggtctgagtgtggtgaagaagaagaggaaaagggatgagcttgagagggaatacgaagcaaagaagtacggcgtgacagagaaccaggaggatggagatttggggaagaaagttgtgggggaaaagaggaaggcggtggacaatccagctgatatgctggtttcagaggaaggtttcgacgacgaaagtaagcttctgaggactattttcgttgggaatttaccggtgaaggtgaagaagaaggtgttgatcagggagttcagtaagtttggagaggtggagtctgtgaggattcggtccgtgccgatagaggatacgaaagcgcccagaaaagtagcagtgcttacaaagaaactccataagaaagctgacaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

184

Amino Acids

20.66

Weight (kDa)

8.56

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46840 AT5G46840
fragaria_vesca	FvH4_5g22460
malus_domestica	MD06G1037000.v1.1 MD16G1272400.v1.1
prunus_persica	Prupe.5G032300_v2.0.a1
pyrus_communis	pycom06g03030 pycom16g24140
rosa_chinensis	RchiOBHm_Chr7g0210251
rosa_laevigata	RLG00000003055
rosa_multiflora	Rmu_co8157162.1_g000001 Rmu_sc0017046.1_g000009 Rmu_sc0018755.1_g000001 Rmu_sc0019437.1_g000002 Rmu_sc0032647.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248520
rosa_rugosa	Rorug07G0120000
rosa_samantha	Rh7AG252900 Rh7BG248000 Rh7CG269900 Rh7DG260500
rosa_wichuraiana	Rw7G021510 Rw7G021530 Rw7G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	2 cut(s)	157, 161
AcsI	RAATTY	2 cut(s)	172, 394
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	3 cut(s)	94, 95, 176
AgeI	ACCGGT	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	5 cut(s)	17, 217, 326, 370, 545
AluI	AGCT	5 cut(s)	17, 217, 326, 370, 545
AlwI	GGATC	2 cut(s)	157, 161
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	172, 394
AsiGI	ACCGGT	1 cut(s)	400
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	1 cut(s)	474
AsuHPI	GGTGA	3 cut(s)	202, 415, 421
AvaII	GGWCC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	263
BciVI	GTATCC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	503
BfuI	GTATCC	1 cut(s)	484
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 95, 176
Bse118I	RCCGGY	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	263
BseGI	GGATG	2 cut(s)	217, 274
BseLI	CCNNNNNNNGG	3 cut(s)	94, 95, 176
BseMII	CTCAG	2 cut(s)	173, 365
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	16
BshTI	ACCGGT	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	3 cut(s)	94, 95, 176
BsmI	GAATGC	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	149, 166, 426
BspACI	CCGC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	174, 366
BspPI	GGATC	2 cut(s)	157, 161
BsrFI	RCCGGY	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	400
BssMI	GATC	3 cut(s)	149, 166, 426
Bst2UI	CCWGG	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	182, 374
BstF5I	GGATG	2 cut(s)	217, 274
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	3 cut(s)	152, 169, 429
BstMBI	GATC	3 cut(s)	149, 166, 426
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	269
BsuI	GTATCC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	217, 274
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	522
CfoI	GCGC	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	474
CpoI	CGGWCCG	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	244
CspAI	ACCGGT	1 cut(s)	400
CspI	CGGWCCG	1 cut(s)	474
CviJI	RGCY	7 cut(s)	17, 29, 49, 217, 326, 370, 545
CviKI_1	RGCY	7 cut(s)	17, 29, 49, 217, 326, 370, 545
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	182, 374
DpnI	GATC	3 cut(s)	151, 168, 428
DpnII	GATC	3 cut(s)	149, 166, 426
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	261
FaiI	YATR	2 cut(s)	332, 537
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	224, 281
Fsp4HI	GCNGC	1 cut(s)	30
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	503
HapII	CCGG	1 cut(s)	401
HhaI	GCGC	1 cut(s)	502
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HindIII	AAGCTT	2 cut(s)	15, 368
HinfI	GANTC	2 cut(s)	458, 469
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	3 cut(s)	202, 415, 421
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	6 cut(s)	22, 103, 171, 183, 343, 375
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	2 cut(s)	359, 362
HpyAV	CCTTC	5 cut(s)	58, 301, 341, 400, 412
HpyCH4V	TGCA	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	182, 374
HspAI	GCGC	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	3 cut(s)	149, 166, 426
LpnPI	CCDG	8 cut(s)	248, 275, 320, 336, 414, 415, 517, 535
Lsp1109I	GCAGC	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	3 cut(s)	151, 168, 428
MboI	GATC	3 cut(s)	149, 166, 426
MluCI	AATT	5 cut(s)	76, 91, 130, 172, 394
MlyI	GAGTC	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	263
NdeII	GATC	3 cut(s)	149, 166, 426
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	250
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	469
PinAI	ACCGGT	1 cut(s)	400
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	474
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
Rsr2I	CGGWCCG	1 cut(s)	474
RsrII	CGGWCCG	1 cut(s)	474
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	149, 166, 426
Sau96I	GGNCC	1 cut(s)	474
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	5 cut(s)	76, 91, 130, 172, 394
SsiI	CCGC	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	261
TaqI	TCGA	3 cut(s)	59, 152, 354
TaqII	GACCGA	1 cut(s)	462
TasI	AATT	5 cut(s)	76, 91, 130, 172, 394
TfiI	GAWTC	1 cut(s)	469
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	2 cut(s)	172, 394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.