Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007990

Physical Location & Seq

Genomic Coordinates Forward (+)

25005749 .. 25007967

Gene Structure 2219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G021530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCTGGTTTCGGAGGAAGGTTTCGACGACGAAAGTAAGCTTCTGAGGACTATTTTCGTTGGGAATTTACCGGTGAAGGTGAAGAAGAAGGTGTTGATCAGGGAGTTCAGTAAGTTTGGAGAGGTGGAGTCTGTGAGGATTCGGTCCGTGCCGATAGAGGATACGAAAGCGCCCAGAAAAGTAGCAGTGCTTACAAAGAAACTCCATAAGAAAGCTGACAGCGTGAATGCATATATCGTTTTCAAGTCAGAGGAATCTGCGCAGGCTTCTCTGTCCCATAACATGGCTGTGGTTGAAGAACATCACATCCGTGTTGACAGGGCATGCCCACCTCGTAAGAAGCTGAAAGGGGAGAACGCTTCTGTTTATGATCACACGAGAACTGTATTTGTGGGCAACCTACCCTTTGAAGTAAAGGATTCCGGAGTTGAAGCCATTCGCATAATCAGGGATTCTAACGTTGGTCTCGGAAAGGGCATTGCTTATGTTCTGTTTAAAACAAAGGAAGCTGCAAATGCAGTCGTTAGGAAACGAAATCTGAAGCTTCGAAATCGGGAACTCAGGCTTTCTCATGCAAAACCAGAGTCCGCCCAATCTAAGAGCAAAAACCAAGATTCCACCCCATCTAAGAGAAGCAATCCATCACCTGCATCAAATACCAAGTCTCCAGCTAAAAGGCCAGCAGTCGGTTCAAGGACTCCAGAGTTTAAGGGAAATCCCAAGGCTACTATGTCCTACCAGGGTGTACGTGCAGGTAAAAATGGTGTCCAAAAGTATCCCAAAGCTAAGTTTGAATCAAGGCCTCAGAGTGGAGTGAAGCCGAAAGAACGTACAGAGAAAAGACCATCTGTTGCTGCCAGAAAAGCTAAGGCGGCATTCCAAGGTGGTGCTGCTTCAAAAGAAGCAGGTGTGAAGCGTAAGATGGATAGTCGAACTCCAGAGAGCTCCCACCAGAAAAAGAAATTCAAGAAATTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

326

Amino Acids

36.24

Weight (kDa)

10.45

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46840 AT5G46840
fragaria_vesca	FvH4_5g22460
malus_domestica	MD06G1037000.v1.1 MD16G1272400.v1.1
prunus_persica	Prupe.5G032300_v2.0.a1
pyrus_communis	pycom06g03030 pycom16g24140
rosa_chinensis	RchiOBHm_Chr7g0210251
rosa_laevigata	RLG00000003055
rosa_multiflora	Rmu_co8157162.1_g000001 Rmu_sc0017046.1_g000009 Rmu_sc0018755.1_g000001 Rmu_sc0019437.1_g000002 Rmu_sc0032647.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248520
rosa_rugosa	Rorug07G0120000
rosa_samantha	Rh7AG252900 Rh7BG248000 Rh7CG269900 Rh7DG260500
rosa_wichuraiana	Rw7G021510 Rw7G021530 Rw7G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	655, 896
Acc16I	TGCGCA	1 cut(s)	261
Acc36I	ACCTGC	3 cut(s)	655, 743, 896
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccIII	TCCGGA	1 cut(s)	422
AciI	CCGC	2 cut(s)	588, 872
AclI	AACGTT	1 cut(s)	459
AcsI	RAATTY	3 cut(s)	64, 962, 971
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	2 cut(s)	747, 832
AfiI	CCNNNNNNNGG	3 cut(s)	283, 686, 809
AgeI	ACCGGT	1 cut(s)	70
AgsI	TTSAA	8 cut(s)	244, 296, 410, 431, 693, 794, 897, 967
AjnI	CCWGG	1 cut(s)	738
AleI	CACNNNNGTG	1 cut(s)	309
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	9 cut(s)	40, 215, 343, 509, 544, 671, 785, 866, 945
AluI	AGCT	9 cut(s)	40, 215, 343, 509, 544, 671, 785, 866, 945
Alw21I	GWGCWC	1 cut(s)	947
Alw26I	GTCTC	2 cut(s)	470, 669
Aor13HI	TCCGGA	1 cut(s)	422
AoxI	GGCC	2 cut(s)	677, 800
ApeKI	GCWGC	3 cut(s)	509, 854, 890
ApoI	RAATTY	3 cut(s)	64, 962, 971
ArsI	GACNNNNNNTTYG	4 cut(s)	569, 601, 647, 679
AsiGI	ACCGGT	1 cut(s)	70
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	2 cut(s)	172, 262
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	3 cut(s)	85, 91, 636
AsuII	TTCGAA	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	947
BauI	CACGAG	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	947
BbvI	GCAGC	3 cut(s)	496, 841, 877
BccI	CCATC	4 cut(s)	631, 649, 853, 916
BciT130I	CCWGG	1 cut(s)	740
BciVI	GTATCC	2 cut(s)	154, 786
BclI	TGATCA	2 cut(s)	96, 370
BcoDI	GTCTC	2 cut(s)	470, 669
BfoI	RGCGCY	1 cut(s)	173
BfuAI	ACCTGC	3 cut(s)	655, 743, 896
BfuI	GTATCC	2 cut(s)	154, 786
BisI	GCNGC	4 cut(s)	510, 855, 873, 891
BlsI	GCNGC	4 cut(s)	511, 856, 874, 892
Bme1390I	CCNGG	1 cut(s)	740
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	740
BmsI	GCATC	1 cut(s)	659
BpmI	CTGGAG	3 cut(s)	651, 684, 921
Bpu10I	CCTNAGC	1 cut(s)	867
Bpu14I	TTCGAA	1 cut(s)	547
BsaAI	YACGTR	1 cut(s)	749
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	3 cut(s)	720, 739, 880
BsaWI	WCCGGW	2 cut(s)	70, 422
BsaXI	ACNNNNNCTCC	2 cut(s)	649, 679
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 686, 809
Bse118I	RCCGGY	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	477
BseAI	TCCGGA	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	740
BseDI	CCNNGG	3 cut(s)	720, 739, 880
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	283, 686, 809
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	3 cut(s)	35, 574, 818
BseXI	GCAGC	3 cut(s)	496, 841, 877
BsgI	GTGCAG	1 cut(s)	771
BshFI	GGCC	2 cut(s)	679, 802
BshTI	ACCGGT	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	947
BsiSI	CCGG	2 cut(s)	71, 423
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	3 cut(s)	283, 686, 809
BsmAI	GTCTC	2 cut(s)	470, 669
BsmFI	GGGAC	1 cut(s)	259
BsmI	GAATGC	2 cut(s)	232, 875
BsnI	GGCC	2 cut(s)	679, 802
Bso31I	GGTCTC	1 cut(s)	470
Bsp119I	TTCGAA	1 cut(s)	547
Bsp1286I	GDGCHC	1 cut(s)	947
Bsp13I	TCCGGA	1 cut(s)	422
Bsp143I	GATC	2 cut(s)	96, 370
BspACI	CCGC	2 cut(s)	588, 872
BspANI	GGCC	2 cut(s)	679, 802
BspCNI	CTCAG	3 cut(s)	36, 573, 817
BspEI	TCCGGA	1 cut(s)	422
BspMI	ACCTGC	3 cut(s)	655, 743, 896
BspT104I	TTCGAA	1 cut(s)	547
BspTNI	GGTCTC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	477
BsrFI	RCCGGY	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	720, 739, 880
BssMI	GATC	2 cut(s)	96, 370
BssSI	CACGAG	1 cut(s)	376
BssT1I	CCWWGG	2 cut(s)	720, 880
Bst2BI	CACGAG	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	740
Bst4CI	ACNGT	1 cut(s)	385
BstBAI	YACGTR	1 cut(s)	749
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	3 cut(s)	264, 325, 681
BstDEI	CTNAG	7 cut(s)	44, 560, 597, 627, 786, 804, 867
BstF5I	GGATG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	172, 262
BstKTI	GATC	2 cut(s)	99, 373
BstMAI	GTCTC	2 cut(s)	470, 669
BstMBI	GATC	2 cut(s)	96, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	515, 863, 872
BstNI	CCWGG	1 cut(s)	740
BstNSI	RCATGY	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	738
BstV1I	GCAGC	3 cut(s)	496, 841, 877
BsuI	GTATCC	2 cut(s)	154, 786
BsuRI	GGCC	2 cut(s)	679, 802
BtsCI	GGATG	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
BveI	ACCTGC	3 cut(s)	655, 743, 896
Cac8I	GCNNGC	3 cut(s)	264, 325, 681
CfoI	GCGC	2 cut(s)	172, 262
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	144
CpoI	CGGWCCG	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	746, 831
CspAI	ACCGGT	1 cut(s)	70
CspI	CGGWCCG	1 cut(s)	144
CviAII	CATG	3 cut(s)	283, 324, 572
CviQI	GTAC	2 cut(s)	746, 831
DdeI	CTNAG	7 cut(s)	44, 560, 597, 627, 786, 804, 867
DpnI	GATC	2 cut(s)	98, 372
DpnII	GATC	2 cut(s)	96, 370
DraI	TTTAAA	1 cut(s)	496
EciI	GGCGGA	1 cut(s)	577
Ecl136II	GAGCTC	1 cut(s)	945
Eco130I	CCWWGG	2 cut(s)	720, 880
Eco147I	AGGCCT	1 cut(s)	802
Eco24I	GRGCYC	1 cut(s)	947
Eco31I	GGTCTC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	945
Eco57I	CTGAAG	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	945
EcoRII	CCWGG	1 cut(s)	738
EcoT14I	CCWWGG	2 cut(s)	720, 880
EcoT22I	ATGCAT	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	947
ErhI	CCWWGG	2 cut(s)	720, 880
FaeI	CATG	3 cut(s)	286, 327, 575
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	3 cut(s)	282, 323, 571
FbaI	TGATCA	2 cut(s)	96, 370
Fnu4HI	GCNGC	4 cut(s)	510, 855, 873, 891
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	947
Fsp4HI	GCNGC	4 cut(s)	510, 855, 873, 891
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	2 cut(s)	171, 261
GluI	GCNGC	4 cut(s)	510, 855, 873, 891
GsuI	CTGGAG	3 cut(s)	651, 684, 921
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	679, 802
HapII	CCGG	2 cut(s)	71, 423
HhaI	GCGC	2 cut(s)	172, 262
Hin1II	CATG	3 cut(s)	286, 327, 575
Hin6I	GCGC	2 cut(s)	170, 260
HinP1I	GCGC	2 cut(s)	170, 260
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	38, 542
HinfI	GANTC	9 cut(s)	128, 139, 254, 419, 452, 584, 614, 697, 794
HpaII	CCGG	2 cut(s)	71, 423
HphI	GGTGA	3 cut(s)	85, 91, 636
Hpy166II	GTNNAC	2 cut(s)	316, 746
Hpy188I	TCNGA	6 cut(s)	13, 45, 250, 470, 540, 807
Hpy188III	TCNNGA	5 cut(s)	423, 554, 701, 938, 967
Hpy8I	GTNNAC	2 cut(s)	316, 746
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyAV	CCTTC	3 cut(s)	11, 70, 82
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	3 cut(s)	459, 748, 829
HpyCH4V	TGCA	6 cut(s)	230, 512, 518, 575, 650, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	515, 863, 872
HpyF3I	CTNAG	7 cut(s)	44, 560, 597, 627, 786, 804, 867
HpySE526I	ACGT	3 cut(s)	459, 748, 829
Hsp92II	CATG	3 cut(s)	286, 327, 575
HspAI	GCGC	2 cut(s)	170, 260
Kpn2I	TCCGGA	1 cut(s)	422
Ksp22I	TGATCA	2 cut(s)	96, 370
Kzo9I	GATC	2 cut(s)	96, 370
LmnI	GCTCC	1 cut(s)	950
Lsp1109I	GCAGC	3 cut(s)	496, 841, 877
LweI	GCATC	1 cut(s)	659
MaeII	ACGT	3 cut(s)	459, 748, 829
MalI	GATC	2 cut(s)	98, 372
MboI	GATC	2 cut(s)	96, 370
MboII	GAAGA	3 cut(s)	94, 97, 308
MhlI	GDGCHC	1 cut(s)	947
MluCI	AATT	3 cut(s)	64, 962, 971
MlyI	GAGTC	3 cut(s)	137, 593, 691
MnlI	CCTC	8 cut(s)	7, 39, 115, 129, 151, 244, 342, 813
Mph1103I	ATGCAT	1 cut(s)	232
MroI	TCCGGA	1 cut(s)	422
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	2 cut(s)	495, 708
MslI	CAYNNNNRTG	2 cut(s)	287, 309
MspI	CCGG	2 cut(s)	71, 423
MspR9I	CCNGG	1 cut(s)	740
Mva1269I	GAATGC	2 cut(s)	232, 875
MvaI	CCWGG	1 cut(s)	740
MwoI	GCNNNNNNNGC	3 cut(s)	515, 863, 872
NdeII	GATC	2 cut(s)	96, 370
NlaIII	CATG	3 cut(s)	286, 327, 575
NsbI	TGCGCA	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	1 cut(s)	327
NspV	TTCGAA	1 cut(s)	547
OliI	CACNNNNGTG	1 cut(s)	309
PaeI	GCATGC	1 cut(s)	327
PaqCI	CACCTGC	2 cut(s)	655, 896
PceI	AGGCCT	1 cut(s)	802
PctI	GAATGC	2 cut(s)	232, 875
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	6 cut(s)	139, 254, 419, 452, 614, 794
PflMI	CCANNNNNTGG	1 cut(s)	283
PinAI	ACCGGT	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	511, 856, 874, 892
PleI	GAGTC	3 cut(s)	136, 592, 691
PpsI	GAGTC	3 cut(s)	136, 592, 691
Ppu21I	YACGTR	1 cut(s)	749
Psp124BI	GAGCTC	1 cut(s)	947
Psp1406I	AACGTT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	738
PspGI	CCWGG	1 cut(s)	738
PspPI	GGNCC	1 cut(s)	144
RsaI	GTAC	2 cut(s)	747, 832
RsaNI	GTAC	2 cut(s)	746, 831
RseI	CAYNNNNRTG	2 cut(s)	287, 309
Rsr2I	CGGWCCG	1 cut(s)	144
RsrII	CGGWCCG	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	947
SaqAI	TTAA	2 cut(s)	495, 708
SatI	GCNGC	4 cut(s)	510, 855, 873, 891
Sau3AI	GATC	2 cut(s)	96, 370
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	3 cut(s)	137, 593, 691
ScrFI	CCNGG	1 cut(s)	740
SduI	GDGCHC	1 cut(s)	947
SfaNI	GCATC	1 cut(s)	659
SfuI	TTCGAA	1 cut(s)	547
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	287, 309
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	3 cut(s)	64, 962, 971
SseBI	AGGCCT	1 cut(s)	802
SsiI	CCGC	2 cut(s)	588, 872
SstI	GAGCTC	1 cut(s)	947
StuI	AGGCCT	1 cut(s)	802
StyD4I	CCNGG	1 cut(s)	738
StyI	CCWWGG	2 cut(s)	720, 880
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	3 cut(s)	462, 751, 832
TaqI	TCGA	3 cut(s)	24, 547, 931
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	3 cut(s)	64, 962, 971
TauI	GCSGC	1 cut(s)	875
TfiI	GAWTC	6 cut(s)	139, 254, 419, 452, 614, 794
Tru1I	TTAA	2 cut(s)	495, 708
Tru9I	TTAA	2 cut(s)	495, 708
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	3 cut(s)	509, 854, 890
TspGWI	ACGGA	2 cut(s)	136, 299
TspRI	CASTG	1 cut(s)	192
Van91I	CCANNNNNTGG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	3 cut(s)	64, 962, 971
XceI	RCATGY	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	435
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.