Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018755.1

Orthogroup ID

OG0007990

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1595

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018755.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 703 bp

ggcatgcccacctcgtaagaagctgaaaggggagaacgcttctgtttatgatcacacgagaactgtatttgtgggcaaccttccctttgaagtaaaggatgaagaagtttatcagttgttttgtggcactaacaatcaggattccggagttgaagccattcgcataatcagggattctaatgttggtctcggaaagggcattgcttatgttctgtttaaaacaaaggaagctgcaaatgcagtcgttaggaaacgaaatctgaagcttcgaaatcgggaactcaggctttctcatgcaaaaccagagtccacccaatctaagagcaaaaaccaagattccaccccatctaagagaagcaatccatcacctgcatcaaataccaagtccccagctaaaaggccagcagtcggttcaaggactccagagtttaagggaaattccaaggctactatgtcctaccagggtgtacgtgcaggtaaaaatggtgtccaaaagtatccaaaagctaagtttgaatcaaggcctcagagtggagtgaagccgaaagaacgtacagagaaaagaccttctgttgctgccagaaaagctaaggcggcattccaaggtggtgctgcttcaaaagaagcaggtgtgaagcgtaagatggatagtcgaactccagagagctcccaccagaaaaagaaattcaagaaatttaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

233

Amino Acids

25.76

Weight (kDa)

10.55

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46840 AT5G46840
fragaria_vesca	FvH4_5g22460
malus_domestica	MD06G1037000.v1.1 MD16G1272400.v1.1
prunus_persica	Prupe.5G032300_v2.0.a1
pyrus_communis	pycom06g03030 pycom16g24140
rosa_chinensis	RchiOBHm_Chr7g0210251
rosa_laevigata	RLG00000003055
rosa_multiflora	Rmu_co8157162.1_g000001 Rmu_sc0017046.1_g000009 Rmu_sc0018755.1_g000001 Rmu_sc0019437.1_g000002 Rmu_sc0032647.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248520
rosa_rugosa	Rorug07G0120000
rosa_samantha	Rh7AG252900 Rh7BG248000 Rh7CG269900 Rh7DG260500
rosa_wichuraiana	Rw7G021510 Rw7G021530 Rw7G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	377, 618
Acc36I	ACCTGC	3 cut(s)	377, 465, 618
AccIII	TCCGGA	1 cut(s)	144
AciI	CCGC	1 cut(s)	594
AcsI	RAATTY	3 cut(s)	437, 684, 693
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	2 cut(s)	469, 554
AfiI	CCNNNNNNNGG	2 cut(s)	408, 531
AgsI	TTSAA	6 cut(s)	90, 153, 415, 516, 619, 689
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	7 cut(s)	23, 231, 266, 393, 507, 588, 667
AluI	AGCT	7 cut(s)	23, 231, 266, 393, 507, 588, 667
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	144
AoxI	GGCC	2 cut(s)	399, 522
ApeKI	GCWGC	3 cut(s)	231, 576, 612
ApoI	RAATTY	3 cut(s)	437, 684, 693
ArsI	GACNNNNNNTTYG	4 cut(s)	291, 323, 369, 401
Asp700I	GAANNNNTTC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	669
BauI	CACGAG	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	3 cut(s)	218, 563, 599
BccI	CCATC	3 cut(s)	353, 371, 638
BciT130I	CCWGG	1 cut(s)	462
BciVI	GTATCC	1 cut(s)	508
BclI	TGATCA	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	192
BfuAI	ACCTGC	3 cut(s)	377, 465, 618
BfuI	GTATCC	1 cut(s)	508
BisI	GCNGC	4 cut(s)	232, 577, 595, 613
BlsI	GCNGC	4 cut(s)	233, 578, 596, 614
Bme1390I	CCNGG	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	462
BmsI	GCATC	1 cut(s)	381
BpmI	CTGGAG	2 cut(s)	406, 643
Bpu10I	CCTNAGC	1 cut(s)	589
Bpu14I	TTCGAA	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	442, 461, 602
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 531
Bse3DI	GCAATG	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	3 cut(s)	442, 461, 602
BseGI	GGATG	1 cut(s)	104
BseLI	CCNNNNNNNGG	2 cut(s)	408, 531
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	296, 540
BseXI	GCAGC	3 cut(s)	218, 563, 599
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	493
BshFI	GGCC	2 cut(s)	401, 524
BsiHKAI	GWGCWC	1 cut(s)	669
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	408, 531
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	2 cut(s)	401, 524
Bso31I	GGTCTC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp13I	TCCGGA	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	594
BspANI	GGCC	2 cut(s)	401, 524
BspCNI	CTCAG	2 cut(s)	295, 539
BspEI	TCCGGA	1 cut(s)	144
BspMI	ACCTGC	3 cut(s)	377, 465, 618
BspT104I	TTCGAA	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	442, 461, 602
BssMI	GATC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	442, 602
Bst2BI	CACGAG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	5, 403
BstDEI	CTNAG	6 cut(s)	282, 319, 349, 508, 526, 589
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	3 cut(s)	237, 585, 594
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	460
BstV1I	GCAGC	3 cut(s)	218, 563, 599
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	401, 524
BtsCI	GGATG	1 cut(s)	104
BveI	ACCTGC	3 cut(s)	377, 465, 618
Cac8I	GCNNGC	2 cut(s)	5, 403
Csp6I	GTAC	2 cut(s)	468, 553
CviAII	CATG	2 cut(s)	4, 294
CviQI	GTAC	2 cut(s)	468, 553
DdeI	CTNAG	6 cut(s)	282, 319, 349, 508, 526, 589
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
DraI	TTTAAA	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	667
Eco130I	CCWWGG	2 cut(s)	442, 602
Eco147I	AGGCCT	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	669
Eco31I	GGTCTC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	442, 602
EcoT38I	GRGCYC	1 cut(s)	669
ErhI	CCWWGG	2 cut(s)	442, 602
FaeI	CATG	2 cut(s)	7, 297
FaiI	YATR	6 cut(s)	5, 49, 165, 208, 295, 453
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	2 cut(s)	3, 293
FbaI	TGATCA	1 cut(s)	50
Fnu4HI	GCNGC	4 cut(s)	232, 577, 595, 613
FokI	GGATG	1 cut(s)	111
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	4 cut(s)	232, 577, 595, 613
GluI	GCNGC	4 cut(s)	232, 577, 595, 613
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	2 cut(s)	406, 643
HaeIII	GGCC	2 cut(s)	401, 524
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	2 cut(s)	7, 297
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	6 cut(s)	141, 174, 306, 336, 419, 516
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	2 cut(s)	310, 468
Hpy188I	TCNGA	3 cut(s)	192, 262, 529
Hpy188III	TCNNGA	6 cut(s)	138, 145, 276, 423, 660, 689
Hpy8I	GTNNAC	2 cut(s)	310, 468
HpyAV	CCTTC	2 cut(s)	90, 577
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	2 cut(s)	470, 551
HpyCH4V	TGCA	5 cut(s)	234, 240, 297, 372, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	237, 585, 594
HpyF3I	CTNAG	6 cut(s)	282, 319, 349, 508, 526, 589
HpySE526I	ACGT	2 cut(s)	470, 551
Hsp92II	CATG	2 cut(s)	7, 297
Kpn2I	TCCGGA	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	672
Lsp1109I	GCAGC	3 cut(s)	218, 563, 599
LweI	GCATC	1 cut(s)	381
MaeII	ACGT	2 cut(s)	470, 551
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	669
MluCI	AATT	3 cut(s)	437, 684, 693
MlyI	GAGTC	2 cut(s)	315, 413
MnlI	CCTC	2 cut(s)	22, 535
MroI	TCCGGA	1 cut(s)	144
MroXI	GAANNNNTTC	1 cut(s)	157
MseI	TTAA	2 cut(s)	217, 430
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	237, 585, 594
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	7, 297
NspI	RCATGY	1 cut(s)	7
NspV	TTCGAA	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	7
PaqCI	CACCTGC	2 cut(s)	377, 618
PceI	AGGCCT	1 cut(s)	524
PctI	GAATGC	1 cut(s)	597
PdmI	GAANNNNTTC	1 cut(s)	157
PfeI	GAWTC	4 cut(s)	141, 174, 336, 516
PkrI	GCNGC	4 cut(s)	233, 578, 596, 614
PleI	GAGTC	2 cut(s)	314, 413
PpsI	GAGTC	2 cut(s)	314, 413
Ppu21I	YACGTR	1 cut(s)	471
Psp124BI	GAGCTC	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	460
RsaI	GTAC	2 cut(s)	469, 554
RsaNI	GTAC	2 cut(s)	468, 553
SacI	GAGCTC	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	217, 430
SatI	GCNGC	4 cut(s)	232, 577, 595, 613
Sau3AI	GATC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	315, 413
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	1 cut(s)	669
SfaNI	GCATC	1 cut(s)	381
SfuI	TTCGAA	1 cut(s)	269
SphI	GCATGC	1 cut(s)	7
Sse9I	AATT	3 cut(s)	437, 684, 693
SseBI	AGGCCT	1 cut(s)	524
SsiI	CCGC	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	669
StuI	AGGCCT	1 cut(s)	524
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	2 cut(s)	442, 602
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	2 cut(s)	473, 554
TaqI	TCGA	2 cut(s)	269, 653
TasI	AATT	3 cut(s)	437, 684, 693
TauI	GCSGC	1 cut(s)	597
TfiI	GAWTC	4 cut(s)	141, 174, 336, 516
Tru1I	TTAA	2 cut(s)	217, 430
Tru9I	TTAA	2 cut(s)	217, 430
TseI	GCWGC	3 cut(s)	231, 576, 612
TspDTI	ATGAA	1 cut(s)	115
XapI	RAATTY	3 cut(s)	437, 684, 693
XceI	RCATGY	1 cut(s)	7
XmnI	GAANNNNTTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.