Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007990

Physical Location & Seq

Genomic Coordinates Reverse (-)

9390500 .. 9398366

Gene Structure 7867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0120000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGACGTTGACTCGTGGGCCTCCAGAGTTCATGCTGCTAAGAGCCTCTCTGCTGTTCATGCTGCACGGATGCACTATGATAATCATTTTGCCTTGGACGATTCTGAAGGAGATGATGATGCAAAGTCTTGTTTTCTATGCCCTTTTTGTTATGTGGACATTGAGGTCCCTATGCTCTGCAACCACTTGGAGGAAGAACACTGCTTTGACTTCAAAAATGCAGTTTGTCCTTTATGTGCAGCAAATCTAGGGAAGGATGTCATCGGACATTTAATGGTGCAGCACGCAAGCTCCTTCAAGCACAGGAGAAAATCTCAAAAATCCGGTCCCTGGACTGGTAGTTCAGCAATGAAAGCGCTGCTGAAGAATGGAAGGGCATATGCACATGAATCTGCACCTGATCCTCTCCTCTCACCTTTTATCTGCAATGTATCATTTTCAGACCCTAATGGTATTCCGCAAGATGTTTGTTCTGATATCAATGCCCCTATTATTTCCGATATGAAAAGCACTGAGCCATCTTTGCCAGATGAAGGTTGTGAAAAGGATAATGCAGAGAGAAGGCAGAGGGCAACATTTGTGCAGCAGTTGATTGCATCAACCATATTCTCAGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

206

Amino Acids

22.72

Weight (kDa)

5.36

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	44 - 96	2.5e-18	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	117 - 202	1.8e-13	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46840 AT5G46840
fragaria_vesca	FvH4_5g22460
malus_domestica	MD06G1037000.v1.1 MD16G1272400.v1.1
prunus_persica	Prupe.5G032300_v2.0.a1
pyrus_communis	pycom06g03030 pycom16g24140
rosa_chinensis	RchiOBHm_Chr7g0210251
rosa_laevigata	RLG00000003055
rosa_multiflora	Rmu_co8157162.1_g000001 Rmu_sc0017046.1_g000009 Rmu_sc0018755.1_g000001 Rmu_sc0019437.1_g000002 Rmu_sc0032647.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248520
rosa_rugosa	Rorug07G0120000
rosa_samantha	Rh7AG252900 Rh7BG248000 Rh7CG269900 Rh7DG260500
rosa_wichuraiana	Rw7G021510 Rw7G021530 Rw7G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	395
AcuI	CTGAAG	2 cut(s)	126, 383
AfeI	AGCGCT	1 cut(s)	357
AfiI	CCNNNNNNNGG	4 cut(s)	190, 330, 335, 533
AgsI	TTSAA	2 cut(s)	214, 298
AjnI	CCWGG	1 cut(s)	329
AloI	GAACNNNNNNTCC	2 cut(s)	325, 357
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
AlwI	GGATC	1 cut(s)	395
Aor51HI	AGCGCT	1 cut(s)	357
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	6 cut(s)	35, 62, 239, 280, 358, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	3 cut(s)	18, 166, 326
AsuHPI	GGTGA	1 cut(s)	405
AvaII	GGWCC	2 cut(s)	166, 326
BauI	CACGAG	1 cut(s)	13
BbvI	GCAGC	6 cut(s)	22, 49, 251, 292, 345, 595
BccI	CCATC	1 cut(s)	526
BciT130I	CCWGG	1 cut(s)	331
BfaI	CTAG	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	359
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	6 cut(s)	36, 63, 240, 281, 359, 584
BlsI	GCNGC	6 cut(s)	37, 64, 241, 282, 360, 585
Bme1390I	CCNGG	1 cut(s)	331
Bme18I	GGWCC	2 cut(s)	166, 326
BmgT120I	GGNCC	3 cut(s)	18, 166, 326
BmiI	GGNNCC	2 cut(s)	168, 328
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	3 cut(s)	60, 109, 605
BplI	GAGNNNNNCTC	2 cut(s)	298, 330
BpmI	CTGGAG	1 cut(s)	7
BsaJI	CCNNGG	2 cut(s)	93, 329
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 330, 335, 533
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	2 cut(s)	354, 433
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	93, 329
BseGI	GGATG	2 cut(s)	75, 262
BseLI	CCNNNNNNNGG	4 cut(s)	190, 330, 335, 533
BseMI	GCAATG	2 cut(s)	354, 433
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	6 cut(s)	22, 49, 251, 292, 345, 595
BsgI	GTGCAG	5 cut(s)	48, 258, 299, 378, 602
BshFI	GGCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	2 cut(s)	152, 312
BslI	CCNNNNNNNGG	4 cut(s)	190, 330, 335, 533
BsmFI	GGGAC	2 cut(s)	152, 312
BsnI	GGCC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	400, 613
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	168, 328
BspPI	GGATC	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	354, 433
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	93, 329
BssMI	GATC	2 cut(s)	400, 613
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	285, 289
BstDEI	CTNAG	3 cut(s)	39, 513, 610
BstF5I	GGATG	2 cut(s)	75, 262
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	2 cut(s)	403, 616
BstMBI	GATC	2 cut(s)	400, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 353, 523
BstNI	CCWGG	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	6 cut(s)	22, 49, 251, 292, 345, 595
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	75, 262
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	199, 510
Cac8I	GCNNGC	2 cut(s)	285, 289
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	18, 166, 326
CviAII	CATG	3 cut(s)	32, 59, 386
CviJI	RGCY	4 cut(s)	20, 45, 291, 517
CviKI_1	RGCY	4 cut(s)	20, 45, 291, 517
DdeI	CTNAG	3 cut(s)	39, 513, 610
DpnI	GATC	2 cut(s)	402, 615
DpnII	GATC	2 cut(s)	400, 613
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	478
Eco47I	GGWCC	2 cut(s)	166, 326
Eco47III	AGCGCT	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	126, 383
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	329
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	35, 62, 389
FaqI	GGGAC	2 cut(s)	152, 312
FatI	CATG	3 cut(s)	31, 58, 385
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	6 cut(s)	36, 63, 240, 281, 359, 584
FokI	GGATG	2 cut(s)	82, 269
Fsp4HI	GCNGC	6 cut(s)	36, 63, 240, 281, 359, 584
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	6 cut(s)	36, 63, 240, 281, 359, 584
GsuI	CTGGAG	1 cut(s)	7
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	3 cut(s)	35, 62, 389
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	11, 101, 389
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	405
Hpy166II	GTNNAC	2 cut(s)	10, 157
Hpy188I	TCNGA	6 cut(s)	106, 266, 442, 475, 499, 613
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	2 cut(s)	10, 157
HpyAV	CCTTC	6 cut(s)	101, 247, 304, 366, 527, 555
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 353, 523
HpyF3I	CTNAG	3 cut(s)	39, 513, 610
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	35, 62, 389
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	2 cut(s)	400, 613
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	8 cut(s)	37, 289, 316, 321, 337, 343, 411, 540
Lsp1109I	GCAGC	6 cut(s)	22, 49, 251, 292, 345, 595
LweI	GCATC	3 cut(s)	60, 109, 605
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	6
MalI	GATC	2 cut(s)	402, 615
MboI	GATC	2 cut(s)	400, 613
MboII	GAAGA	2 cut(s)	206, 376
MflI	RGATCY	1 cut(s)	613
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	7 cut(s)	31, 56, 157, 184, 414, 419, 561
MseI	TTAA	1 cut(s)	272
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	59, 353, 523
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	400, 613
NlaIII	CATG	3 cut(s)	35, 62, 389
NlaIV	GGNNCC	2 cut(s)	168, 328
PfeI	GAWTC	2 cut(s)	101, 389
PkrI	GCNGC	6 cut(s)	37, 64, 241, 282, 360, 585
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PpuMI	RGGWCCY	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	168, 328
PspPI	GGNCC	3 cut(s)	18, 166, 326
PspPPI	RGGWCCY	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	613
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	6 cut(s)	36, 63, 240, 281, 359, 584
Sau3AI	GATC	2 cut(s)	400, 613
Sau96I	GGNCC	3 cut(s)	18, 166, 326
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	331
SetI	ASST	6 cut(s)	9, 168, 293, 400, 418, 538
SfaNI	GCATC	3 cut(s)	60, 109, 605
SinI	GGWCC	2 cut(s)	166, 326
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	1 cut(s)	93
TaiI	ACGT	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	101, 389
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	2 cut(s)	206, 517
TseI	GCWGC	6 cut(s)	35, 62, 239, 280, 358, 583
TspDTI	ATGAA	6 cut(s)	20, 47, 365, 402, 518, 546
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	206, 517
VpaK11BI	GGWCC	2 cut(s)	166, 326
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.