Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032647.1

Orthogroup ID

OG0007990

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1464

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032647.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgggaaggaagaagcccaaggacccagaaagcgacgccgtttcgggtcaacccgacatattcaagaccctattcggcgacgccgccacccaggacgccgcccccgccatcttctccgacgacaaccccttcaggaggaagaaccaggaaccagggtcagggtttgccgctgctccgtcgctcgaaaccgtcggaaacgtcaaccacggcggctccgaggacaaggacgctggcaatggtgaggtgaggaagaagaggaagaagaaggcgatggattcggctgctgaagaagaagaagaagaagaagcttcagaggaggctgcattagagagcaagaagccgaagaaatcgaagaaggaaaaacccaatttggaaaaccctaatttgggttctgaaagcaaagaaaatgatgtggtgtccaatttggttttgggtttgggatcgaatgccgagaatgatccgaatttgggtctgagtgtggtgaagaagaagaggaaaagggatgagcttgagagggaatacgaagcaaagaagtacggcgtgacagagaaccaggaggatggagatttggggaagaaagttgtgggggaaaagaggaaggcggtggacaatccagctgatatgctggtttcagaggaaggtttcgacgacgaaagtaagcttctgaggactattttcgttgggaatttaccggtgaaggtgaagaagaaggtgttgatcagggagttcagtaagtttggagaggtggagtctgtgaggattcggtccgtgccgatagaggatacgaaagcgcccagaaaagtagcagtgcttacaaagaaactccataagaaagctgacagcgtgaatgcatacatcgttttcaagtcagaggaatctgcgcaggcttctctgtcccataacatggctgtggttgaagaacatcacatccgtgttgacagggcatgcccacctcgtaagaagctgaaaggggagaacgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

327

Amino Acids

36.0

Weight (kDa)

7.7

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46840 AT5G46840
fragaria_vesca	FvH4_5g22460
malus_domestica	MD06G1037000.v1.1 MD16G1272400.v1.1
prunus_persica	Prupe.5G032300_v2.0.a1
pyrus_communis	pycom06g03030 pycom16g24140
rosa_chinensis	RchiOBHm_Chr7g0210251
rosa_laevigata	RLG00000003055
rosa_multiflora	Rmu_co8157162.1_g000001 Rmu_sc0017046.1_g000009 Rmu_sc0018755.1_g000001 Rmu_sc0019437.1_g000002 Rmu_sc0032647.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248520
rosa_rugosa	Rorug07G0120000
rosa_samantha	Rh7AG252900 Rh7BG248000 Rh7CG269900 Rh7DG260500
rosa_wichuraiana	Rw7G021510 Rw7G021530 Rw7G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	882
AccB7I	CCANNNNNTGG	1 cut(s)	904
AciI	CCGC	6 cut(s)	84, 99, 105, 168, 210, 602
AclWI	GGATC	2 cut(s)	448, 452
AcsI	RAATTY	2 cut(s)	463, 685
AcuI	CTGAAG	3 cut(s)	115, 294, 306
AcyI	GRCGYC	3 cut(s)	36, 81, 96
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	6 cut(s)	135, 158, 385, 386, 467, 904
AgeI	ACCGGT	1 cut(s)	691
AgsI	TTSAA	3 cut(s)	64, 865, 917
AjnI	CCWGG	4 cut(s)	90, 144, 151, 552
AleI	CACNNNNGTG	1 cut(s)	930
AloI	GAACNNNNNNTCC	2 cut(s)	912, 944
AluBI	AGCT	6 cut(s)	308, 508, 617, 661, 836, 964
AluI	AGCT	6 cut(s)	308, 508, 617, 661, 836, 964
AlwI	GGATC	2 cut(s)	448, 452
ApeKI	GCWGC	3 cut(s)	170, 281, 320
ApoI	RAATTY	2 cut(s)	463, 685
AsiGI	ACCGGT	1 cut(s)	691
AspLEI	GCGC	2 cut(s)	793, 883
AspS9I	GGNCC	2 cut(s)	22, 765
AsuHPI	GGTGA	5 cut(s)	251, 256, 493, 706, 712
AvaII	GGWCC	2 cut(s)	22, 765
BbvI	GCAGC	3 cut(s)	157, 268, 307
BccI	CCATC	3 cut(s)	116, 265, 554
BceAI	ACGGC	3 cut(s)	23, 223, 553
BciT130I	CCWGG	4 cut(s)	92, 146, 153, 554
BciVI	GTATCC	1 cut(s)	775
BclI	TGATCA	1 cut(s)	717
BfoI	RGCGCY	1 cut(s)	794
BfuI	GTATCC	1 cut(s)	775
BisI	GCNGC	7 cut(s)	84, 99, 168, 171, 211, 282, 321
BlsI	GCNGC	7 cut(s)	85, 100, 169, 172, 212, 283, 322
Bme1390I	CCNGG	4 cut(s)	92, 146, 153, 554
Bme18I	GGWCC	2 cut(s)	22, 765
BmgT120I	GGNCC	2 cut(s)	22, 765
BmiI	GGNNCC	3 cut(s)	24, 150, 214
BmrFI	CCNGG	4 cut(s)	92, 146, 153, 554
BpuEI	CTTGAG	1 cut(s)	530
BsaHI	GRCGYC	3 cut(s)	36, 81, 96
BsaJI	CCNNGG	5 cut(s)	18, 90, 152, 205, 216
BsaWI	WCCGGW	1 cut(s)	691
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	6 cut(s)	135, 158, 385, 386, 467, 904
Bse118I	RCCGGY	1 cut(s)	691
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	4 cut(s)	92, 146, 153, 554
BseDI	CCNNGG	5 cut(s)	18, 90, 152, 205, 216
BseGI	GGATG	3 cut(s)	508, 565, 927
BseLI	CCNNNNNNNGG	6 cut(s)	135, 158, 385, 386, 467, 904
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	464, 656
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	3 cut(s)	157, 268, 307
BshTI	ACCGGT	1 cut(s)	691
BsiSI	CCGG	1 cut(s)	692
BslFI	GGGAC	1 cut(s)	880
BslI	CCNNNNNNNGG	6 cut(s)	135, 158, 385, 386, 467, 904
BsmFI	GGGAC	1 cut(s)	880
BsmI	GAATGC	2 cut(s)	451, 853
Bsp143I	GATC	3 cut(s)	440, 457, 717
BspACI	CCGC	6 cut(s)	84, 99, 105, 168, 210, 602
BspCNI	CTCAG	2 cut(s)	465, 657
BspLI	GGNNCC	3 cut(s)	24, 150, 214
BspPI	GGATC	2 cut(s)	448, 452
BsrDI	GCAATG	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	691
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	5 cut(s)	18, 90, 152, 205, 216
BssMI	GATC	3 cut(s)	440, 457, 717
BssNI	GRCGYC	3 cut(s)	36, 81, 96
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	4 cut(s)	92, 146, 153, 554
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	248, 485
BstACI	GRCGYC	3 cut(s)	36, 81, 96
BstC8I	GCNNGC	3 cut(s)	232, 885, 946
BstDEI	CTNAG	2 cut(s)	473, 665
BstDSI	CCRYGG	1 cut(s)	205
BstENI	CCTNNNNNAGG	1 cut(s)	133
BstF5I	GGATG	3 cut(s)	508, 565, 927
BstH2I	RGCGCY	1 cut(s)	794
BstHHI	GCGC	2 cut(s)	793, 883
BstKTI	GATC	3 cut(s)	443, 460, 720
BstMBI	GATC	3 cut(s)	440, 457, 717
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	4 cut(s)	92, 146, 153, 554
BstNSI	RCATGY	1 cut(s)	948
BstSCI	CCNGG	4 cut(s)	90, 144, 151, 552
BstV1I	GCAGC	3 cut(s)	157, 268, 307
BstXI	CCANNNNNNTGG	1 cut(s)	560
BsuI	GTATCC	1 cut(s)	775
BtgI	CCRYGG	1 cut(s)	205
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	3 cut(s)	508, 565, 927
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	1 cut(s)	813
Cac8I	GCNNGC	3 cut(s)	232, 885, 946
CfoI	GCGC	2 cut(s)	793, 883
Cfr10I	RCCGGY	1 cut(s)	691
Cfr13I	GGNCC	2 cut(s)	22, 765
CpoI	CGGWCCG	1 cut(s)	765
CseI	GACGC	4 cut(s)	44, 89, 104, 236
Csp6I	GTAC	1 cut(s)	535
CspAI	ACCGGT	1 cut(s)	691
CspI	CGGWCCG	1 cut(s)	765
CviAII	CATG	2 cut(s)	904, 945
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	2 cut(s)	473, 665
DpnI	GATC	3 cut(s)	442, 459, 719
DpnII	GATC	3 cut(s)	440, 457, 717
Eam1104I	CTCTTC	2 cut(s)	248, 485
EarI	CTCTTC	2 cut(s)	248, 485
Eco130I	CCWWGG	1 cut(s)	18
Eco47I	GGWCC	2 cut(s)	22, 765
Eco57I	CTGAAG	3 cut(s)	115, 294, 306
EcoNI	CCTNNNNNAGG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRII	CCWGG	4 cut(s)	90, 144, 151, 552
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	2 cut(s)	907, 948
FaiI	YATR	7 cut(s)	59, 623, 828, 853, 900, 905, 946
FaqI	GGGAC	1 cut(s)	880
FatI	CATG	2 cut(s)	903, 944
FauI	CCCGC	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	717
Fnu4HI	GCNGC	7 cut(s)	84, 99, 168, 171, 211, 282, 321
FokI	GGATG	3 cut(s)	515, 572, 914
Fsp4HI	GCNGC	7 cut(s)	84, 99, 168, 171, 211, 282, 321
FspI	TGCGCA	1 cut(s)	882
GlaI	GCGC	2 cut(s)	792, 882
GluI	GCNGC	7 cut(s)	84, 99, 168, 171, 211, 282, 321
HaeII	RGCGCY	1 cut(s)	794
HapII	CCGG	1 cut(s)	692
HgaI	GACGC	4 cut(s)	44, 89, 104, 236
HhaI	GCGC	2 cut(s)	793, 883
Hin1I	GRCGYC	3 cut(s)	36, 81, 96
Hin1II	CATG	2 cut(s)	907, 948
Hin6I	GCGC	2 cut(s)	791, 881
HinP1I	GCGC	2 cut(s)	791, 881
HincII	GTYRAC	3 cut(s)	50, 202, 937
HindII	GTYRAC	3 cut(s)	50, 202, 937
HindIII	AAGCTT	2 cut(s)	306, 659
HinfI	GANTC	4 cut(s)	275, 749, 760, 875
HpaII	CCGG	1 cut(s)	692
HphI	GGTGA	5 cut(s)	251, 256, 493, 706, 712
Hpy166II	GTNNAC	4 cut(s)	50, 202, 607, 937
Hpy188III	TCNNGA	2 cut(s)	64, 133
Hpy8I	GTNNAC	4 cut(s)	50, 202, 607, 937
Hpy99I	CGWCG	7 cut(s)	38, 83, 122, 181, 194, 650, 653
HpyAV	CCTTC	7 cut(s)	139, 259, 349, 592, 632, 691, 703
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	323, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	473, 665
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	3 cut(s)	36, 81, 96
Hsp92II	CATG	2 cut(s)	907, 948
HspAI	GCGC	2 cut(s)	791, 881
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	3 cut(s)	440, 457, 717
LmnI	GCTCC	2 cut(s)	178, 218
Lsp1109I	GCAGC	3 cut(s)	157, 268, 307
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	3 cut(s)	442, 459, 719
MboI	GATC	3 cut(s)	440, 457, 717
MluCI	AATT	5 cut(s)	367, 382, 421, 463, 685
MlyI	GAGTC	1 cut(s)	758
MmeI	TCCRAC	2 cut(s)	141, 172
Mph1103I	ATGCAT	1 cut(s)	853
MslI	CAYNNNNRTG	2 cut(s)	908, 930
MspA1I	CMGCKG	2 cut(s)	170, 617
MspI	CCGG	1 cut(s)	692
MspR9I	CCNGG	4 cut(s)	92, 146, 153, 554
Mva1269I	GAATGC	2 cut(s)	451, 853
MvaI	CCWGG	4 cut(s)	92, 146, 153, 554
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	3 cut(s)	440, 457, 717
NlaIII	CATG	2 cut(s)	907, 948
NlaIV	GGNNCC	3 cut(s)	24, 150, 214
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	541
NsbI	TGCGCA	1 cut(s)	882
NsiI	ATGCAT	1 cut(s)	853
NspI	RCATGY	1 cut(s)	948
OliI	CACNNNNGTG	1 cut(s)	930
PaeI	GCATGC	1 cut(s)	948
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PctI	GAATGC	2 cut(s)	451, 853
PfeI	GAWTC	3 cut(s)	275, 760, 875
PflMI	CCANNNNNTGG	1 cut(s)	904
PinAI	ACCGGT	1 cut(s)	691
PkrI	GCNGC	7 cut(s)	85, 100, 169, 172, 212, 283, 322
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
PpuMI	RGGWCCY	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	4 cut(s)	90, 144, 151, 552
PspGI	CCWGG	4 cut(s)	90, 144, 151, 552
PspN4I	GGNNCC	3 cut(s)	24, 150, 214
PspPI	GGNCC	2 cut(s)	22, 765
PspPPI	RGGWCCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	2 cut(s)	908, 930
Rsr2I	CGGWCCG	1 cut(s)	765
RsrII	CGGWCCG	1 cut(s)	765
SatI	GCNGC	7 cut(s)	84, 99, 168, 171, 211, 282, 321
Sau3AI	GATC	3 cut(s)	440, 457, 717
Sau96I	GGNCC	2 cut(s)	22, 765
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	4 cut(s)	92, 146, 153, 554
SinI	GGWCC	2 cut(s)	22, 765
SmiMI	CAYNNNNRTG	2 cut(s)	908, 930
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
SphI	GCATGC	1 cut(s)	948
Sse9I	AATT	5 cut(s)	367, 382, 421, 463, 685
SsiI	CCGC	6 cut(s)	84, 99, 105, 168, 210, 602
StyD4I	CCNGG	4 cut(s)	90, 144, 151, 552
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	4 cut(s)	183, 350, 443, 645
TaqII	GACCGA	1 cut(s)	753
TasI	AATT	5 cut(s)	367, 382, 421, 463, 685
TauI	GCSGC	4 cut(s)	86, 101, 170, 213
TfiI	GAWTC	3 cut(s)	275, 760, 875
TscAI	CASTG	1 cut(s)	813
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	3 cut(s)	170, 281, 320
Tsp45I	GTSAC	1 cut(s)	541
TspGWI	ACGGA	3 cut(s)	165, 757, 920
TspRI	CASTG	1 cut(s)	813
Van91I	CCANNNNNTGG	1 cut(s)	904
VpaK11BI	GGWCC	2 cut(s)	22, 765
XagI	CCTNNNNNAGG	1 cut(s)	133
XapI	RAATTY	2 cut(s)	463, 685
XceI	RCATGY	1 cut(s)	948
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
Zsp2I	ATGCAT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.