Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Forward (+)

19314778 .. 19316169

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAACGTGGAGGCTTCCATGGCTACCGCAAGCTGTCCGTGAACAACACCACTCCTTCTCCACCAGGATTAGCAGCGAATTTTCTGATGGCAGAGGGCAGTATGCGTCCTCCAGAATTCAACCAGCCTAACAAAACCAGTAATGGTGGTGAGGAGGAGTGCACGGTGAGGGAGCAAGACAGGTTCATGCCTATTGCCAACGTGATACGGATCATGCGGAGGATCTTACCTGCTCACGCCAAGATCTCAGATGACTCCAAGGAGACGATCCAAGAGTGTGTTTCGGAGTACATCAGCTTCATAACAGGGGAGGCTAATGAGCGGTGCCAGCGGGAACAGCGCAAGACCATCACTGCTGAGGACGTCTTGTGGGCAATGAGCAAGCTCGGTTTTGATGACTACATCGAACCCCTCACGTTGTACCTCCACCGCTACAGAGAGTTGGAAGGTGAAAGAGGGGTTAGCTGCAGTGCTGGGTCCGTTAGTATGACCAACGGCTTGGTGGTCAAGAGGCCTAATGGGACCATGACCGAGTATGGAGCCTACGGGCCTGTGCCAGGGATTCACATGGCGCAGTACCATTATCGTCATCAGAACGGGTTTGTTTTCAGTGGTAACGAACCTAATTCTAAGATGAGTGGTTCATCTTCAGGAGCAAGTGGCGCCAGAGTTGAAGTATTTCCGACTCAACAACATAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

234

Amino Acids

26.14

Weight (kDa)

6.66

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	45 - 126	1.3e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	62 - 126	1.2e-24	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	366
Acc36I	ACCTGC	1 cut(s)	238
AccB1I	GGYRCC	2 cut(s)	324, 662
AccBSI	CCGCTC	1 cut(s)	322
AciI	CCGC	5 cut(s)	28, 217, 322, 331, 430
AclWI	GGATC	3 cut(s)	218, 230, 262
AcsI	RAATTY	2 cut(s)	79, 116
AcuI	CTGAAG	1 cut(s)	633
AcyI	GRCGYC	2 cut(s)	363, 663
AfaI	GTAC	4 cut(s)	290, 422, 578, 701
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	121, 674
AjnI	CCWGG	2 cut(s)	64, 556
AluBI	AGCT	4 cut(s)	34, 297, 385, 465
AluI	AGCT	4 cut(s)	34, 297, 385, 465
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	257
Alw44I	GTGCAC	1 cut(s)	160
AlwI	GGATC	3 cut(s)	218, 230, 262
AoxI	GGCC	2 cut(s)	512, 548
ApaLI	GTGCAC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	74, 465
ApoI	RAATTY	2 cut(s)	79, 116
Asp700I	GAANNNNTTC	1 cut(s)	678
AspLEI	GCGC	3 cut(s)	342, 574, 665
AspS9I	GGNCC	3 cut(s)	477, 522, 548
AsuHPI	GGTGA	3 cut(s)	161, 178, 461
AvaII	GGWCC	2 cut(s)	477, 522
BaeGI	GKGCMC	1 cut(s)	164
BanI	GGYRCC	2 cut(s)	324, 662
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
Bbv12I	GWGCWC	1 cut(s)	164
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	86, 452
BccI	CCATC	2 cut(s)	82, 356
BceAI	ACGGC	1 cut(s)	511
BciT130I	CCWGG	2 cut(s)	66, 558
BcoDI	GTCTC	1 cut(s)	257
BfmI	CTRYAG	2 cut(s)	433, 466
BfoI	RGCGCY	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	238
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	2 cut(s)	75, 466
BlsI	GCNGC	2 cut(s)	76, 467
BmcAI	AGTACT	1 cut(s)	701
Bme1390I	CCNGG	2 cut(s)	66, 558
Bme18I	GGWCC	2 cut(s)	477, 522
BmgT120I	GGNCC	3 cut(s)	477, 522, 548
BmiI	GGNNCC	5 cut(s)	326, 478, 523, 541, 664
BmrFI	CCNGG	2 cut(s)	66, 558
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	209
BsaHI	GRCGYC	2 cut(s)	363, 663
BsaJI	CCNNGG	3 cut(s)	19, 258, 557
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	209
BseBI	CCWGG	2 cut(s)	66, 558
BseDI	CCNNGG	3 cut(s)	19, 258, 557
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	261, 348
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	2 cut(s)	167, 170
BseSI	GKGCMC	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	86, 452
BseYI	CCCAGC	1 cut(s)	473
BshFI	GGCC	2 cut(s)	514, 550
BshNI	GGYRCC	2 cut(s)	324, 662
BsiHKAI	GWGCWC	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	257
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	514, 550
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	4 cut(s)	210, 222, 243, 267
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	5 cut(s)	28, 217, 322, 331, 430
BspANI	GGCC	2 cut(s)	514, 550
BspCNI	CTCAG	2 cut(s)	260, 349
BspLI	GGNNCC	5 cut(s)	326, 478, 523, 541, 664
BspMAI	CTGCAG	1 cut(s)	470
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	3 cut(s)	218, 230, 262
BspT107I	GGYRCC	2 cut(s)	324, 662
BsrBI	CCGCTC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	3 cut(s)	19, 258, 557
BssMI	GATC	4 cut(s)	210, 222, 243, 267
BssNI	GRCGYC	2 cut(s)	363, 663
BssT1I	CCWWGG	2 cut(s)	19, 258
Bst2UI	CCWGG	2 cut(s)	66, 558
Bst4CI	ACNGT	1 cut(s)	166
BstACI	GRCGYC	2 cut(s)	363, 663
BstC8I	GCNNGC	3 cut(s)	32, 329, 383
BstDEI	CTNAG	3 cut(s)	247, 357, 630
BstDSI	CCRYGG	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	555
BstH2I	RGCGCY	1 cut(s)	666
BstHHI	GCGC	3 cut(s)	342, 574, 665
BstKTI	GATC	4 cut(s)	213, 225, 246, 270
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	4 cut(s)	210, 222, 243, 267
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 328, 337, 662
BstNI	CCWGG	2 cut(s)	66, 558
BstSCI	CCNGG	2 cut(s)	64, 556
BstSFI	CTRYAG	2 cut(s)	433, 466
BstSLI	GKGCMC	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	86, 452
BstX2I	RGATCY	2 cut(s)	222, 243
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	2 cut(s)	222, 243
BsuRI	GGCC	2 cut(s)	514, 550
BtgI	CCRYGG	1 cut(s)	19
BtsI	GCAGTG	2 cut(s)	351, 475
BtsIMutI	CAGTG	3 cut(s)	351, 475, 616
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	3 cut(s)	32, 329, 383
CfoI	GCGC	3 cut(s)	342, 574, 665
Cfr13I	GGNCC	3 cut(s)	477, 522, 548
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	4 cut(s)	289, 421, 577, 700
CviAII	CATG	5 cut(s)	20, 187, 214, 526, 568
CviQI	GTAC	4 cut(s)	289, 421, 577, 700
DdeI	CTNAG	3 cut(s)	247, 357, 630
DinI	GGCGCC	1 cut(s)	664
DpnI	GATC	4 cut(s)	212, 224, 245, 269
DpnII	GATC	4 cut(s)	210, 222, 243, 267
Eco130I	CCWWGG	2 cut(s)	19, 258
Eco147I	AGGCCT	1 cut(s)	514
Eco47I	GGWCC	2 cut(s)	477, 522
Eco57I	CTGAAG	1 cut(s)	633
EcoNI	CCTNNNNNAGG	1 cut(s)	555
EcoRI	GAATTC	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	64, 556
EcoT14I	CCWWGG	2 cut(s)	19, 258
EgeI	GGCGCC	1 cut(s)	664
EheI	GGCGCC	1 cut(s)	664
ErhI	CCWWGG	2 cut(s)	19, 258
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	5 cut(s)	23, 190, 217, 529, 571
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	5 cut(s)	19, 186, 213, 525, 567
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	75, 466
Fsp4HI	GCNGC	2 cut(s)	75, 466
GlaI	GCGC	3 cut(s)	341, 573, 664
GluI	GCNGC	2 cut(s)	75, 466
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	514, 550
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	3 cut(s)	342, 574, 665
Hin1I	GRCGYC	2 cut(s)	363, 663
Hin1II	CATG	5 cut(s)	23, 190, 217, 529, 571
Hin6I	GCGC	3 cut(s)	340, 572, 663
HinP1I	GCGC	3 cut(s)	340, 572, 663
HinfI	GANTC	3 cut(s)	254, 562, 685
HphI	GGTGA	3 cut(s)	161, 178, 461
Hpy166II	GTNNAC	2 cut(s)	43, 162
Hpy188I	TCNGA	5 cut(s)	87, 250, 286, 594, 684
Hpy188III	TCNNGA	3 cut(s)	113, 508, 651
Hpy8I	GTNNAC	2 cut(s)	43, 162
HpyAV	CCTTC	2 cut(s)	66, 440
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	4 cut(s)	7, 201, 363, 416
HpyCH4V	TGCA	2 cut(s)	162, 468
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 328, 337, 662
HpyF3I	CTNAG	3 cut(s)	247, 357, 630
HpySE526I	ACGT	4 cut(s)	7, 201, 363, 416
Hsp92I	GRCGYC	2 cut(s)	363, 663
Hsp92II	CATG	5 cut(s)	23, 190, 217, 529, 571
HspAI	GCGC	3 cut(s)	340, 572, 663
KasI	GGCGCC	1 cut(s)	662
Kzo9I	GATC	4 cut(s)	210, 222, 243, 267
LmnI	GCTCC	3 cut(s)	172, 539, 653
Lsp1109I	GCAGC	2 cut(s)	86, 452
MaeII	ACGT	4 cut(s)	7, 201, 363, 416
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	4 cut(s)	212, 224, 245, 269
MbiI	CCGCTC	1 cut(s)	322
MboI	GATC	4 cut(s)	210, 222, 243, 267
MboII	GAAGA	1 cut(s)	639
MflI	RGATCY	2 cut(s)	222, 243
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	3 cut(s)	79, 116, 625
Mly113I	GGCGCC	1 cut(s)	663
MlyI	GAGTC	2 cut(s)	248, 679
MmeI	TCCRAC	1 cut(s)	423
MroXI	GAANNNNTTC	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	331
MspR9I	CCNGG	2 cut(s)	66, 558
MvaI	CCWGG	2 cut(s)	66, 558
MwoI	GCNNNNNNNGC	4 cut(s)	21, 328, 337, 662
NarI	GGCGCC	1 cut(s)	663
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	4 cut(s)	210, 222, 243, 267
NlaIII	CATG	5 cut(s)	23, 190, 217, 529, 571
NlaIV	GGNNCC	5 cut(s)	326, 478, 523, 541, 664
PceI	AGGCCT	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	76, 467
PleI	GAGTC	2 cut(s)	248, 679
PluTI	GGCGCC	1 cut(s)	666
PpsI	GAGTC	2 cut(s)	248, 679
Psp6I	CCWGG	2 cut(s)	64, 556
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	2 cut(s)	64, 556
PspN4I	GGNNCC	5 cut(s)	326, 478, 523, 541, 664
PspPI	GGNCC	3 cut(s)	477, 522, 548
PstI	CTGCAG	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	222, 243
RsaI	GTAC	4 cut(s)	290, 422, 578, 701
RsaNI	GTAC	4 cut(s)	289, 421, 577, 700
SatI	GCNGC	2 cut(s)	75, 466
Sau3AI	GATC	4 cut(s)	210, 222, 243, 267
Sau96I	GGNCC	3 cut(s)	477, 522, 548
ScaI	AGTACT	1 cut(s)	701
SchI	GAGTC	2 cut(s)	248, 679
ScrFI	CCNGG	2 cut(s)	66, 558
SduI	GDGCHC	1 cut(s)	164
SfcI	CTRYAG	2 cut(s)	433, 466
SfoI	GGCGCC	1 cut(s)	664
SinI	GGWCC	2 cut(s)	477, 522
Sse9I	AATT	3 cut(s)	79, 116, 625
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	5 cut(s)	28, 217, 322, 331, 430
SspDI	GGCGCC	1 cut(s)	662
StuI	AGGCCT	1 cut(s)	514
StyD4I	CCNGG	2 cut(s)	64, 556
StyI	CCWWGG	2 cut(s)	19, 258
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	4 cut(s)	10, 204, 366, 419
TaqI	TCGA	1 cut(s)	405
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	3 cut(s)	79, 116, 625
TatI	WGTACW	2 cut(s)	288, 699
TfiI	GAWTC	1 cut(s)	562
TscAI	CASTG	3 cut(s)	358, 475, 616
TseI	GCWGC	2 cut(s)	74, 465
TspDTI	ATGAA	3 cut(s)	175, 289, 633
TspGWI	ACGGA	3 cut(s)	28, 223, 469
TspRI	CASTG	3 cut(s)	358, 475, 616
VneI	GTGCAC	1 cut(s)	160
VpaK11BI	GGWCC	2 cut(s)	477, 522
XagI	CCTNNNNNAGG	1 cut(s)	555
XapI	RAATTY	2 cut(s)	79, 116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	678
ZraI	GACGTC	1 cut(s)	364
ZrmI	AGTACT	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.