Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Reverse (-)

343695 .. 344369

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030872

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCAGGGCTGAAACTGTCAGAGATCAACATGAGGCTGGCTGAGATCAACCACACCAAGAATAGCGCTGCTATCACCAACAATGGTGGTGGTGCTGCTGCTGCTACTGATGAGAATGAATGCACTGTGCGAGAGCAAGACCGTTTCATGCCCATTGCCAATGTGATCAGAATCATGCGCAAGATCCTGCCCCCGCATGCCAAGATCTCAGACGACGCCAAGGAAACAATCCAAGAGTGTGTCTCAGAGTACATCAGCTTCATCACAGGGGAGGCCAATGAGCGTTGCCAGCGTGAGCAGCGCAAGACCATTACTGCCGAAGACGTGCTGTGGGCAATGAGCAAGCTGGGGTTCGATGACTACATTGAGCCCCTCACTCTCTACCTCCACCGCTTCCGCGAGATGGAGGGAGATCGTGGCTCCATGAGGGCCGAGACTTTGATGAAGACTAGTAGTAGGGCAATGACTGCGGCAGAATATCATGCAGCTGCAGCAGGCTCTTTCGCTGGTTTTGCTCCTTTTCATCACCATGGCTTTTTCGGATACTTGAAGGATGCGTCCATATCCAATGGGGCAGCTGGTACATCTTTGTCCCACCAGGCTAATGCTGTCGCTGCAATGGCAAATGGTGATCACCAGGCATCACATTCCCAGTATGATGATAACAATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

225

Amino Acids

24.62

Weight (kDa)

5.92

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	35 - 113	3.2e-07	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	49 - 113	4.4e-26	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	179
AccII	CGCG	1 cut(s)	399
AciI	CCGC	4 cut(s)	194, 391, 397, 470
AclWI	GGATC	1 cut(s)	178
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	2 cut(s)	251, 583
AfeI	AGCGCT	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	550
AhlI	ACTAGT	1 cut(s)	449
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	597, 636
AluBI	AGCT	4 cut(s)	258, 346, 488, 578
AluI	AGCT	4 cut(s)	258, 346, 488, 578
Alw26I	GTCTC	2 cut(s)	247, 428
AlwI	GGATC	1 cut(s)	178
Aor51HI	AGCGCT	1 cut(s)	67
AoxI	GGCC	2 cut(s)	273, 429
AspLEI	GCGC	3 cut(s)	68, 180, 303
AspS9I	GGNCC	1 cut(s)	429
AsuHPI	GGTGA	4 cut(s)	67, 518, 626, 641
BanII	GRGCYC	1 cut(s)	372
BarI	GAAGNNNNNNTAC	2 cut(s)	242, 274
BbsI	GAAGAC	2 cut(s)	327, 452
BccI	CCATC	1 cut(s)	397
BciT130I	CCWGG	2 cut(s)	599, 638
BciVI	GTATCC	1 cut(s)	536
BclI	TGATCA	2 cut(s)	165, 631
BcoDI	GTCTC	2 cut(s)	247, 428
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	599, 638
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	429
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	2 cut(s)	599, 638
BmrI	ACTGGG	1 cut(s)	646
BmsI	GCATC	2 cut(s)	544, 650
BmuI	ACTGGG	1 cut(s)	646
BpiI	GAAGAC	2 cut(s)	327, 452
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BsaBI	GATNNNNATC	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	219, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	652
Bse3DI	GCAATG	4 cut(s)	153, 342, 468, 624
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	599, 638
BseDI	CCNNGG	2 cut(s)	219, 529
BseGI	GGATG	1 cut(s)	559
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	4 cut(s)	153, 342, 468, 624
BseMII	CTCAG	3 cut(s)	33, 222, 258
BseNI	ACTGG	1 cut(s)	652
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	275, 431
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	247, 428
BsmFI	GGGAC	1 cut(s)	577
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	275, 431
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	7 cut(s)	24, 45, 165, 183, 204, 412, 631
Bsp19I	CCATGG	1 cut(s)	529
BspACI	CCGC	4 cut(s)	194, 391, 397, 470
BspANI	GGCC	2 cut(s)	275, 431
BspCNI	CTCAG	3 cut(s)	34, 221, 257
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	421
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	1 cut(s)	178
BsrDI	GCAATG	4 cut(s)	153, 342, 468, 624
BsrI	ACTGG	1 cut(s)	652
BssECI	CCNNGG	2 cut(s)	219, 529
BssMI	GATC	7 cut(s)	24, 45, 165, 183, 204, 412, 631
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	2 cut(s)	219, 529
Bst2UI	CCWGG	2 cut(s)	599, 638
Bst4CI	ACNGT	3 cut(s)	18, 127, 143
BstACI	GRCGYC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	5 cut(s)	39, 198, 290, 344, 496
BstDEI	CTNAG	3 cut(s)	42, 208, 244
BstDSI	CCRYGG	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	3 cut(s)	68, 180, 303
BstKTI	GATC	7 cut(s)	27, 48, 168, 186, 207, 415, 634
BstMAI	GTCTC	2 cut(s)	247, 428
BstMBI	GATC	7 cut(s)	24, 45, 165, 183, 204, 412, 631
BstMWI	GCNNNNNNNGC	8 cut(s)	101, 289, 298, 467, 491, 512, 614, 620
BstNI	CCWGG	2 cut(s)	599, 638
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	597, 636
BstSFI	CTRYAG	1 cut(s)	489
BstUI	CGCG	1 cut(s)	399
BstV2I	GAAGAC	2 cut(s)	327, 452
BstX2I	RGATCY	2 cut(s)	183, 204
BstYI	RGATCY	2 cut(s)	183, 204
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	275, 431
BtgI	CCRYGG	1 cut(s)	529
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	5 cut(s)	39, 198, 290, 344, 496
CfoI	GCGC	3 cut(s)	68, 180, 303
Cfr13I	GGNCC	1 cut(s)	429
CseI	GACGC	2 cut(s)	224, 546
Csp6I	GTAC	2 cut(s)	250, 582
CspCI	CAANNNNNGTGG	4 cut(s)	67, 70, 102, 105
CviAII	CATG	7 cut(s)	31, 148, 175, 197, 424, 482, 530
CviQI	GTAC	2 cut(s)	250, 582
DdeI	CTNAG	3 cut(s)	42, 208, 244
DpnI	GATC	7 cut(s)	26, 47, 167, 185, 206, 414, 633
DpnII	GATC	7 cut(s)	24, 45, 165, 183, 204, 412, 631
Eco130I	CCWWGG	2 cut(s)	219, 529
Eco24I	GRGCYC	1 cut(s)	372
Eco47III	AGCGCT	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	597, 636
EcoT14I	CCWWGG	2 cut(s)	219, 529
EcoT38I	GRGCYC	1 cut(s)	372
ErhI	CCWWGG	2 cut(s)	219, 529
FaeI	CATG	7 cut(s)	34, 151, 178, 200, 427, 485, 533
FaiI	YATR	9 cut(s)	32, 149, 176, 198, 425, 483, 531, 563, 657
FaqI	GGGAC	1 cut(s)	577
FatI	CATG	7 cut(s)	30, 147, 174, 196, 423, 481, 529
FauI	CCCGC	1 cut(s)	201
FbaI	TGATCA	2 cut(s)	165, 631
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	1 cut(s)	372
FspBI	CTAG	1 cut(s)	450
FspI	TGCGCA	1 cut(s)	179
GlaI	GCGC	3 cut(s)	67, 179, 302
GsaI	CCCAGC	1 cut(s)	350
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	275, 431
HgaI	GACGC	2 cut(s)	224, 546
HhaI	GCGC	3 cut(s)	68, 180, 303
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	7 cut(s)	34, 151, 178, 200, 427, 485, 533
Hin6I	GCGC	3 cut(s)	66, 178, 301
HinP1I	GCGC	3 cut(s)	66, 178, 301
HinfI	GANTC	1 cut(s)	171
HphI	GGTGA	4 cut(s)	67, 518, 626, 641
Hpy188I	TCNGA	5 cut(s)	22, 170, 211, 247, 542
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	544
HpyCH4III	ACNGT	3 cut(s)	18, 127, 143
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	4 cut(s)	123, 485, 491, 617
HpyF10VI	GCNNNNNNNGC	8 cut(s)	101, 289, 298, 467, 491, 512, 614, 620
HpyF3I	CTNAG	3 cut(s)	42, 208, 244
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	7 cut(s)	34, 151, 178, 200, 427, 485, 533
HspAI	GCGC	3 cut(s)	66, 178, 301
Ksp22I	TGATCA	2 cut(s)	165, 631
Kzo9I	GATC	7 cut(s)	24, 45, 165, 183, 204, 412, 631
LmnI	GCTCC	2 cut(s)	425, 520
LweI	GCATC	2 cut(s)	544, 650
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	324
MalI	GATC	7 cut(s)	26, 47, 167, 185, 206, 414, 633
MboI	GATC	7 cut(s)	24, 45, 165, 183, 204, 412, 631
MboII	GAAGA	2 cut(s)	332, 457
MflI	RGATCY	2 cut(s)	183, 204
MhlI	GDGCHC	1 cut(s)	372
MnlI	CCTC	6 cut(s)	27, 265, 383, 395, 400, 420
MslI	CAYNNNNRTG	1 cut(s)	528
MspA1I	CMGCKG	2 cut(s)	488, 578
MspR9I	CCNGG	2 cut(s)	599, 638
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	2 cut(s)	599, 638
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	8 cut(s)	101, 289, 298, 467, 491, 512, 614, 620
NcoI	CCATGG	1 cut(s)	529
NdeII	GATC	7 cut(s)	24, 45, 165, 183, 204, 412, 631
NlaIII	CATG	7 cut(s)	34, 151, 178, 200, 427, 485, 533
NlaIV	GGNNCC	1 cut(s)	421
NmeAIII	GCCGAG	1 cut(s)	457
NsbI	TGCGCA	1 cut(s)	179
NspI	RCATGY	1 cut(s)	200
PaeI	GCATGC	1 cut(s)	200
PctI	GAATGC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	597, 636
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	2 cut(s)	597, 636
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	429
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	183, 204
PvuII	CAGCTG	2 cut(s)	488, 578
RsaI	GTAC	2 cut(s)	251, 583
RsaNI	GTAC	2 cut(s)	250, 582
RseI	CAYNNNNRTG	1 cut(s)	528
Sau3AI	GATC	7 cut(s)	24, 45, 165, 183, 204, 412, 631
Sau96I	GGNCC	1 cut(s)	429
ScrFI	CCNGG	2 cut(s)	599, 638
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	6 cut(s)	260, 327, 348, 387, 490, 580
SfaNI	GCATC	2 cut(s)	544, 650
SfcI	CTRYAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	528
SpeI	ACTAGT	1 cut(s)	449
SphI	GCATGC	1 cut(s)	200
SsiI	CCGC	4 cut(s)	194, 391, 397, 470
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	597, 636
StyI	CCWWGG	2 cut(s)	219, 529
TaaI	ACNGT	3 cut(s)	18, 127, 143
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	354
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	171
TscAI	CASTG	1 cut(s)	130
TspDTI	ATGAA	5 cut(s)	132, 136, 250, 458, 512
TspRI	CASTG	1 cut(s)	130
XceI	RCATGY	1 cut(s)	200
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.